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Revision 2206 - Directory Listing
Modified Wed Jun 25 14:57:02 2008 UTC (11 years, 3 months ago) by mmaechler
bdiag(): use Doug`s better algorithm, fix "bugs"

Revision 2205 - Directory Listing
Modified Tue Jun 17 16:15:20 2008 UTC (11 years, 4 months ago) by mmaechler
rm old option of using "l" or "u" in uplo-slot

Revision 2203 - Directory Listing
Modified Sat Jun 14 20:09:17 2008 UTC (11 years, 4 months ago) by mmaechler
C based encodeInd() -> faster indexing; any()/all() for nsparse; printSpMatrix2(); show(<diag>)

Revision 2199 - Directory Listing
Modified Mon Jun 2 16:09:12 2008 UTC (11 years, 4 months ago) by mmaechler
changes related to 2197; also one small step at reducing the ambiguity warnings

Revision 2196 - Directory Listing
Modified Fri May 30 21:49:50 2008 UTC (11 years, 4 months ago) by mmaechler
Ops methods for <diag> o <dMatrix>

Revision 2193 - Directory Listing
Modified Mon May 5 06:56:21 2008 UTC (11 years, 5 months ago) by mmaechler
less TODO; more "Done"

Revision 2191 - Directory Listing
Modified Wed Apr 30 06:32:09 2008 UTC (11 years, 5 months ago) by mmaechler
add missing \alias{} for group method and other methods that 2.7.0 did not show missing

Revision 2190 - Directory Listing
Modified Mon Apr 28 16:24:15 2008 UTC (11 years, 5 months ago) by mmaechler
cholMat(); update dpo coercion tests

Revision 2185 - Directory Listing
Modified Sat Apr 26 20:33:16 2008 UTC (11 years, 5 months ago) by mmaechler
more <Ops> methods, notably for lMatrix & nMatrix

Revision 2184 - Directory Listing
Modified Sat Apr 26 20:32:39 2008 UTC (11 years, 5 months ago) by mmaechler
define image()-methods on higher level [ln]sparseMatrix

Revision 2183 - Directory Listing
Modified Thu Apr 24 10:58:51 2008 UTC (11 years, 5 months ago) by mmaechler
slight change in class-definition of [d]diMatrix; better pos.definite checks for dpo* and dpp*

Revision 2182 - Directory Listing
Modified Thu Apr 24 10:57:08 2008 UTC (11 years, 5 months ago) by mmaechler
expm() methods for diagonal/triangular/symmetric

Revision 2177 - Directory Listing
Modified Thu Apr 24 06:30:21 2008 UTC (11 years, 5 months ago) by mmaechler
Diagonal() in example

Revision 2175 - Directory Listing
Modified Wed Apr 23 11:23:50 2008 UTC (11 years, 5 months ago) by mmaechler
more determinant(); MANY consistency cleanups, found by checkMatrix(); .. (see ChangeLog)

Revision 2168 - Directory Listing
Modified Mon Apr 14 10:41:14 2008 UTC (11 years, 6 months ago) by mmaechler
new image() method: do *not* use abs(.) by default, but colors

Revision 2163 - Directory Listing
Modified Sat Mar 29 14:45:18 2008 UTC (11 years, 6 months ago) by maechler
evade newest CMD check warnings

Revision 2161 - Directory Listing
Modified Sat Mar 29 14:08:25 2008 UTC (11 years, 6 months ago) by maechler
make work with 2.7.0 version that do not have rcond

Revision 2158 - Directory Listing
Modified Fri Mar 28 17:07:54 2008 UTC (11 years, 6 months ago) by maechler
rcond(., norm) instead of (., type)

Revision 2157 - Directory Listing
Modified Tue Mar 25 15:00:01 2008 UTC (11 years, 6 months ago) by maechler
BunchKaufman(); fix <ddi> o <numeric> bug; Version++

Revision 2154 - Directory Listing
Modified Sat Mar 22 21:23:12 2008 UTC (11 years, 6 months ago) by maechler
no longer use "non-standard" chol() and qr() generic

Revision 2152 - Directory Listing
Modified Sat Mar 22 16:09:05 2008 UTC (11 years, 6 months ago) by maechler
helpfile from last millennium or so

Revision 2151 - Directory Listing
Modified Thu Mar 20 23:31:22 2008 UTC (11 years, 6 months ago) by maechler
several cosmetics

Revision 2150 - Directory Listing
Modified Thu Mar 20 23:30:10 2008 UTC (11 years, 6 months ago) by maechler
add two spatial sparse examples from Roger Bivand

Revision 2149 - Directory Listing
Modified Thu Mar 20 23:29:09 2008 UTC (11 years, 6 months ago) by maechler
oops; forgotten to svn add / commit, about a week ago

Revision 2145 - Directory Listing
Modified Wed Mar 19 14:00:47 2008 UTC (11 years, 6 months ago) by bates
Add Imult argument to Cholesky

Revision 2144 - Directory Listing
Modified Tue Mar 18 23:08:12 2008 UTC (11 years, 7 months ago) by maechler
.symDiagonal(), is.na() and more diagonalMatrix "Ops"

Revision 2142 - Directory Listing
Modified Tue Mar 18 15:02:23 2008 UTC (11 years, 7 months ago) by bates
update method for CHMfactor; change return type of exported C function chm_factor_update

Revision 2137 - Directory Listing
Modified Mon Mar 17 22:21:24 2008 UTC (11 years, 7 months ago) by maechler
my fast determinant(<dsC..>) versions

Revision 2136 - Directory Listing
Modified Mon Mar 17 22:20:29 2008 UTC (11 years, 7 months ago) by maechler
more methods for subclasses, against "ambiguity" warnings

Revision 2134 - Directory Listing
Modified Mon Mar 17 18:53:43 2008 UTC (11 years, 7 months ago) by bates
Log-determinant of the parent matrix from a CHMfactor object as chm_factor_ldetL2; documentation and support

Revision 2130 - Directory Listing
Modified Fri Mar 14 19:27:16 2008 UTC (11 years, 7 months ago) by maechler
back-compatibility: as(., "dsCMatrix") with one warning per session

Revision 2128 - Directory Listing
Modified Thu Mar 13 23:08:34 2008 UTC (11 years, 7 months ago) by maechler
fix diagonal <-> sparse  buglets

Revision 2115 - Directory Listing
Modified Sat Feb 23 09:23:17 2008 UTC (11 years, 7 months ago) by maechler
+ forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band allowing simplified methods;  Matrix() and many man/*Rd : replace many as(*, <specific>) by as(*, <virtual superclass>)

Revision 2113 - Directory Listing
Modified Mon Feb 18 08:27:41 2008 UTC (11 years, 7 months ago) by maechler
miscellaneous cleanup; typically indexing and coercion

Revision 2112 - Directory Listing
Modified Mon Feb 18 08:24:46 2008 UTC (11 years, 7 months ago) by maechler
new symmpart(), skewpart()

Revision 2110 - Directory Listing
Modified Sat Jan 26 20:59:26 2008 UTC (11 years, 8 months ago) by maechler
more indexing/subassignment & testing those

Revision 2107 - Directory Listing
Modified Fri Jan 25 10:39:25 2008 UTC (11 years, 8 months ago) by maechler
forgotten "svn add" for r4904 (Schur class etc)

Revision 2106 - Directory Listing
Modified Wed Jan 23 09:36:04 2008 UTC (11 years, 8 months ago) by maechler
+ "Schur" class and many more Schur methods

Revision 2105 - Directory Listing
Modified Tue Jan 15 10:16:29 2008 UTC (11 years, 9 months ago) by maechler
solve(<CHMfactor>, <numeric>) and related

Revision 2103 - Directory Listing
Modified Fri Jan 11 22:39:21 2008 UTC (11 years, 9 months ago) by maechler
update on rcond()

Revision 2098 - Directory Listing
Modified Sun Dec 9 00:35:14 2007 UTC (11 years, 10 months ago) by maechler
indexing M[i], for *vector* i; and tests for those, see ChangeLog

Revision 2096 - Directory Listing
Modified Fri Dec 7 17:44:44 2007 UTC (11 years, 10 months ago) by maechler
+ cov2cor(); updates to nearPD()+doc; others

Revision 2095 - Directory Listing
Modified Wed Dec 5 17:57:24 2007 UTC (11 years, 10 months ago) by maechler
s/sxtabs/xtabs/ + fix + doc(incl example)

Revision 2082 - Directory Listing
Modified Sat Oct 6 22:09:19 2007 UTC (12 years ago) by maechler
harmless typo

Revision 2081 - Directory Listing
Modified Sat Oct 6 22:01:45 2007 UTC (12 years ago) by maechler
some more dense solve() / lu()

Revision 2072 - Directory Listing
Modified Wed Sep 26 16:16:13 2007 UTC (12 years ago) by maechler
rcond() and qr.R() - unfinished (need TESTING; see FIXME)

Revision 2067 - Directory Listing
Modified Wed Sep 12 14:35:36 2007 UTC (12 years, 1 month ago) by maechler
document chol() and qr() S4 generic; move all chol() method docs to chol.Rd

Revision 2066 - Directory Listing
Modified Wed Sep 12 12:51:19 2007 UTC (12 years, 1 month ago) by maechler
add to example

Revision 2064 - Directory Listing
Modified Tue Sep 11 21:23:13 2007 UTC (12 years, 1 month ago) by bates
Code used dgees but docs said dgeesx.

Revision 2062 - Directory Listing
Modified Sat Sep 1 21:06:52 2007 UTC (12 years, 1 month ago) by maechler
more  [<- (i=missing,j=ANY, value=Matrix) etc

Revision 2055 - Directory Listing
Modified Thu Aug 16 15:48:27 2007 UTC (12 years, 2 months ago) by maechler
minor update

Revision 2049 - Directory Listing
Modified Tue Aug 14 22:22:24 2007 UTC (12 years, 2 months ago) by bates
Remove deprecated function writeHB and its methods; switch writeMM to use CHOLMOD code; repair readMM

Revision 2048 - Directory Listing
Modified Tue Aug 14 15:09:10 2007 UTC (12 years, 2 months ago) by maechler
new nearPD() {from Jens` nearcor()}; some TODO cleanup

Revision 2043 - Directory Listing
Modified Sat Aug 11 03:18:26 2007 UTC (12 years, 2 months ago) by maechler
image() new defaults + docs; misc

Revision 2039 - Directory Listing
Modified Mon Aug 6 18:49:27 2007 UTC (12 years, 2 months ago) by maechler
solve, %*% etc and correct test

Revision 2036 - Directory Listing
Modified Mon Aug 6 12:03:47 2007 UTC (12 years, 2 months ago) by maechler
add more x

Revision 2023 - Directory Listing
Modified Wed Aug 1 20:26:21 2007 UTC (12 years, 2 months ago) by maechler
+ missing \alias{..}

Revision 2018 - Directory Listing
Modified Wed Aug 1 15:22:05 2007 UTC (12 years, 2 months ago) by maechler
fix <dge> %*% <dtr> + misc.cosmetics

Revision 2017 - Directory Listing
Modified Wed Aug 1 15:18:25 2007 UTC (12 years, 2 months ago) by maechler
mention a few times that people should typically rather use  chol(.)

Revision 2015 - Directory Listing
Modified Wed Jul 25 14:17:24 2007 UTC (12 years, 2 months ago) by maechler
(mostly) patches from Brian re potential changes in R-devel

Revision 2005 - Directory Listing
Modified Wed Jul 18 14:46:20 2007 UTC (12 years, 3 months ago) by maechler
norm() for sparse; systematic checking of norm() and all "Summary" methods

Revision 1968 - Directory Listing
Modified Sat Jul 7 22:49:12 2007 UTC (12 years, 3 months ago) by maechler
Rsparse validation methods; finally make use of slot_dup() macro; fix R_to_C (symmetric)

Revision 1948 - Directory Listing
Modified Thu Jul 5 08:42:05 2007 UTC (12 years, 3 months ago) by maechler
yet another example

Revision 1947 - Directory Listing
Modified Thu Jul 5 08:22:00 2007 UTC (12 years, 3 months ago) by maechler
printSpMatrix() {exported, extended, documented}

Revision 1932 - Directory Listing
Modified Fri Jun 29 16:43:47 2007 UTC (12 years, 3 months ago) by maechler
Math/Math2: setGeneric adaption for todays` R-devel

Revision 1922 - Directory Listing
Modified Sat Jun 23 18:08:48 2007 UTC (12 years, 3 months ago) by maechler
xsparseVector etc (smarter coercions)

Revision 1911 - Directory Listing
Modified Tue Jun 19 16:16:58 2007 UTC (12 years, 3 months ago) by maechler
colSums, ... rowMeans for all Matrices; notably sparse ones via [diln]gCMatrix_colSums C code

Revision 1903 - Directory Listing
Modified Sat Jun 16 18:31:51 2007 UTC (12 years, 4 months ago) by maechler
+ print(<sparse>, extra args)

Revision 1900 - Directory Listing
Modified Sat Jun 16 11:54:40 2007 UTC (12 years, 4 months ago) by maechler
add qr() based LS example, comparing solution with Chol() one.

Revision 1898 - Directory Listing
Modified Fri Jun 15 23:13:43 2007 UTC (12 years, 4 months ago) by bates
Don't need an interactions class.  Use the row names to store the levels - duh

Revision 1896 - Directory Listing
Modified Fri Jun 15 18:20:26 2007 UTC (12 years, 4 months ago) by bates
draft "indicators" class

Revision 1895 - Directory Listing
Modified Fri Jun 15 18:19:23 2007 UTC (12 years, 4 months ago) by bates
added lm.fit.sparse (unexported), coercion of "factor" to dgCMatrix and dgCMatrix_cholsol

Revision 1893 - Directory Listing
Modified Thu Jun 14 10:46:10 2007 UTC (12 years, 4 months ago) by maechler
more strict validity checking for Csparse

Revision 1887 - Directory Listing
Modified Thu Jun 7 09:04:34 2007 UTC (12 years, 4 months ago) by maechler
few misc.

Revision 1885 - Directory Listing
Modified Thu Jun 7 08:54:16 2007 UTC (12 years, 4 months ago) by maechler
+ another kronecker method [against infinite recursion]

Revision 1883 - Directory Listing
Modified Wed Jun 6 14:24:58 2007 UTC (12 years, 4 months ago) by maechler
use correct "na.rm" default in all() and any(); tests for that

Revision 1872 - Directory Listing
Modified Tue Jun 5 16:32:04 2007 UTC (12 years, 4 months ago) by maechler
+ example

Revision 1855 - Directory Listing
Modified Wed May 23 21:33:34 2007 UTC (12 years, 4 months ago) by maechler
export drop0() {name is open for discussion}; document colSums

Revision 1852 - Directory Listing
Modified Mon May 21 16:42:35 2007 UTC (12 years, 4 months ago) by maechler
sparseVector. <- v; rowSums/colSums; summary(<sparse>); spMatrix(.) utility

Revision 1845 - Directory Listing
Modified Wed May 16 21:24:41 2007 UTC (12 years, 5 months ago) by maechler
part of sparseVector additions; in order to avoid merge conflicts

Revision 1844 - Directory Listing
Modified Wed May 16 20:40:34 2007 UTC (12 years, 5 months ago) by bates
Added solve methods for CHMfactor class

Revision 1838 - Directory Listing
Modified Tue May 15 10:33:37 2007 UTC (12 years, 5 months ago) by maechler
extraneous "}" found by new R-devel checks

Revision 1829 - Directory Listing
Modified Thu Apr 26 06:35:20 2007 UTC (12 years, 5 months ago) by maechler
update; mostly for ("[", Tsparse..)"

Revision 1825 - Directory Listing
Modified Thu Apr 12 13:21:51 2007 UTC (12 years, 6 months ago) by maechler
kronecker() rationalization; more setAs(), notably to virtual classes and tT <-> gT

Revision 1806 - Directory Listing
Modified Tue Mar 27 16:46:29 2007 UTC (12 years, 6 months ago) by maechler
first cut at new page __ FIXME

Revision 1799 - Directory Listing
Modified Sat Mar 24 14:54:00 2007 UTC (12 years, 6 months ago) by maechler
+ diff(.), + "dim<-";  cBind/rBind + cbind/rbind; indexing fixes - current state

Revision 1791 - Directory Listing
Modified Sat Feb 24 16:59:07 2007 UTC (12 years, 7 months ago) by bates
Add information on 0-based permutation

Revision 1786 - Directory Listing
Modified Fri Feb 16 17:37:56 2007 UTC (12 years, 8 months ago) by bates
Add image method for CHMfactor class

Revision 1767 - Directory Listing
Modified Mon Feb 5 16:53:17 2007 UTC (12 years, 8 months ago) by maechler
eliminate infinite loop in coercions to [ln]sparseMatrix

Revision 1765 - Directory Listing
Modified Mon Feb 5 16:32:04 2007 UTC (12 years, 8 months ago) by maechler
more Matrix <-> SparseM

Revision 1760 - Directory Listing
Modified Sat Feb 3 21:13:22 2007 UTC (12 years, 8 months ago) by maechler
Rsparse coercions now all via R-level "workaround"; to and from  *virtual* rather than specific classes

Revision 1751 - Directory Listing
Modified Tue Jan 30 17:41:02 2007 UTC (12 years, 8 months ago) by maechler
drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R

Revision 1748 - Directory Listing
Modified Mon Jan 29 20:48:26 2007 UTC (12 years, 8 months ago) by maechler
solve(<diagMatrix>)

Revision 1747 - Directory Listing
Modified Mon Jan 29 20:17:33 2007 UTC (12 years, 8 months ago) by maechler
many more coercions for diag(), "!", etc; see ChangeLog

Revision 1738 - Directory Listing
Modified Tue Jan 23 17:17:15 2007 UTC (12 years, 8 months ago) by maechler
nnzero(), length(), "Ops" & "Logic", many more setAs(); misc.fixes

Revision 1737 - Directory Listing
Modified Tue Jan 23 17:14:20 2007 UTC (12 years, 8 months ago) by maechler
much faster "fancy" adjust in show()

Revision 1725 - Directory Listing
Modified Wed Jan 17 08:01:10 2007 UTC (12 years, 9 months ago) by maechler
accomplished quite a few small FIXMEs; see ChangeLog

Revision 1724 - Directory Listing
Modified Sat Jan 13 21:06:51 2007 UTC (12 years, 9 months ago) by maechler
indexing etc till yesterday

Revision 1714 - Directory Listing
Modified Thu Dec 28 22:11:32 2006 UTC (12 years, 9 months ago) by maechler
move Ops to new Ops.R; start using "Logic"

Revision 1710 - Directory Listing
Modified Tue Dec 26 15:57:06 2006 UTC (12 years, 9 months ago) by maechler
more "[<-" fixes; validity of triangular sparse

Revision 1708 - Directory Listing
Modified Fri Dec 22 19:53:37 2006 UTC (12 years, 9 months ago) by maechler
rbind2() / cbind2() methods fixes + new Auxiliaries

Revision 1707 - Directory Listing
Modified Thu Dec 21 08:03:05 2006 UTC (12 years, 9 months ago) by maechler
fix last (? ha!) indexing bug; cbind2/rbind2

Revision 1705 - Directory Listing
Modified Sat Dec 16 12:37:25 2006 UTC (12 years, 10 months ago) by maechler
any(), all() and "Compare"(<sparse>) - for release of 0.9975-7

Revision 1696 - Directory Listing
Modified Mon Dec 11 21:41:37 2006 UTC (12 years, 10 months ago) by maechler
fix symmetric-sparse-indexing bug

Revision 1687 - Directory Listing
Modified Tue Dec 5 13:37:13 2006 UTC (12 years, 10 months ago) by maechler
3 mini updates

Revision 1673 - Directory Listing
Modified Mon Nov 6 20:54:26 2006 UTC (12 years, 11 months ago) by maechler
host of changes; mostly indexing(sub-set & -assign) for symmetric and [ cbind(i,j) ]

Revision 1665 - Directory Listing
Modified Fri Nov 3 23:18:07 2006 UTC (12 years, 11 months ago) by maechler
fully-sparse solve() for dsC; indexing & comparison fixes

Revision 1660 - Directory Listing
Modified Thu Nov 2 11:05:35 2006 UTC (12 years, 11 months ago) by maechler
tcrossprod(<Csp>, <Csp>); dimnames for [t]crossprod; validity now ensures correct length(Dimnames[[j]])

Revision 1659 - Directory Listing
Modified Wed Nov 1 17:50:15 2006 UTC (12 years, 11 months ago) by maechler
extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

Revision 1657 - Directory Listing
Modified Wed Nov 1 16:29:53 2006 UTC (12 years, 11 months ago) by bates
crossprod(<CsparseMatrix>,<CsparseMatrix>) added

Revision 1655 - Directory Listing
Modified Mon Oct 30 17:16:27 2006 UTC (12 years, 11 months ago) by maechler
another set of fixes/improvements; the last prompted by Harri Kiiveri

Revision 1654 - Directory Listing
Modified Fri Oct 27 16:58:15 2006 UTC (12 years, 11 months ago) by maechler
miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

Revision 1642 - Directory Listing
Modified Fri Oct 20 21:08:28 2006 UTC (12 years, 11 months ago) by maechler
small changes related to "corMatrix" and other newly seen classes in tests/Class+Meth.R

Revision 1620 - Directory Listing
Modified Sat Oct 7 12:48:05 2006 UTC (13 years ago) by bates
deprecate writeHB in favor of writeMM

Revision 1618 - Directory Listing
Modified Fri Oct 6 15:44:01 2006 UTC (13 years ago) by maechler
Matrix(0, d,d) should also give sparse (not diagonal); general_to_symmetric; notably for lsC*; more coercions; first cut at Csparse_drop()

Revision 1617 - Directory Listing
Modified Fri Oct 6 15:42:12 2006 UTC (13 years ago) by maechler
sub-assign to diagonal => sparse; + new bdiag() function

Revision 1615 - Directory Listing
Modified Thu Oct 5 16:30:46 2006 UTC (13 years ago) by maechler
M[i,j] <- <Matrix>

Revision 1599 - Directory Listing
Modified Fri Sep 29 09:39:50 2006 UTC (13 years ago) by maechler
more coercion methods (for rare matrices)  => less exceptions

Revision 1592 - Directory Listing
Modified Thu Sep 28 15:31:17 2006 UTC (13 years ago) by maechler
"Compare" for "dMatrix"; plus a few small ones

Revision 1582 - Directory Listing
Modified Tue Sep 19 08:03:10 2006 UTC (13 years ago) by maechler
s/dito/ditto/

Revision 1576 - Directory Listing
Modified Mon Sep 18 15:30:37 2006 UTC (13 years, 1 month ago) by maechler
small update

Revision 1575 - Directory Listing
Modified Mon Sep 18 14:47:40 2006 UTC (13 years, 1 month ago) by maechler
check 'x' slot in l.CMatrix_validate

Revision 1571 - Directory Listing
Modified Sat Sep 16 21:03:12 2006 UTC (13 years, 1 month ago) by maechler
several small fixes + more tests for "lMatrix" classes; "Compare"; "chol"

Revision 1565 - Directory Listing
Modified Fri Sep 15 14:02:48 2006 UTC (13 years, 1 month ago) by maechler
Matrix <-> graph coercion update (for R 2.4.0)

Revision 1551 - Directory Listing
Modified Tue Sep 12 16:39:13 2006 UTC (13 years, 1 month ago) by maechler
1st fix at "Compare"; other small fixes

Revision 1548 - Directory Listing
Modified Mon Sep 11 22:13:07 2006 UTC (13 years, 1 month ago) by maechler
new nMatrix and subclasses; lsparse change to have x slot; many consequences

Revision 1542 - Directory Listing
Modified Sat Sep 9 12:05:46 2006 UTC (13 years, 1 month ago) by maechler
do not define tcrossprod(<matrix>); not yet "graph::"

Revision 1507 - Directory Listing
Modified Mon Sep 4 18:41:34 2006 UTC (13 years, 1 month ago) by bates
Merging changes from Matrix-nolmer branch

Revision 1479 - Directory Listing
Modified Fri Sep 1 23:17:59 2006 UTC (13 years, 1 month ago) by bates
What was I thinking?  I checked in files without running R CMD check and adding documentation for methods.  Now fixed.

Revision 1472 - Directory Listing
Modified Fri Sep 1 15:31:04 2006 UTC (13 years, 1 month ago) by maechler
miscellaneous tweaks; moved some method definitions higher up

Revision 1467 - Directory Listing
Modified Wed Aug 30 21:35:09 2006 UTC (13 years, 1 month ago) by maechler
several smallish fixes

Revision 1463 - Directory Listing
Modified Tue Aug 29 22:30:57 2006 UTC (13 years, 1 month ago) by bates
Promotion of %*% and solve to RHS of ddenseMatrix

Revision 1462 - Directory Listing
Modified Tue Aug 29 16:34:49 2006 UTC (13 years, 1 month ago) by bates
Generalize %*% methods for sparse matrices

Revision 1460 - Directory Listing
Modified Tue Aug 29 14:07:52 2006 UTC (13 years, 1 month ago) by bates
Promote %*% methods to ddenseMatrix class

Revision 1456 - Directory Listing
Modified Mon Aug 28 15:36:16 2006 UTC (13 years, 1 month ago) by maechler
Arith( dMatrix, dMatrix)

Revision 1455 - Directory Listing
Modified Mon Aug 28 15:35:44 2006 UTC (13 years, 1 month ago) by maechler
Matrix(*, forceCheck)

Revision 1454 - Directory Listing
Modified Mon Aug 28 13:00:39 2006 UTC (13 years, 1 month ago) by maechler
references

Revision 1453 - Directory Listing
Modified Sun Aug 27 16:16:35 2006 UTC (13 years, 1 month ago) by bates
Added triu, tril and band for ddenseMatrix objects.

Revision 1448 - Directory Listing
Modified Sat Aug 26 03:29:36 2006 UTC (13 years, 1 month ago) by bates
Move methods to the CsparseMatrix class

Revision 1447 - Directory Listing
Modified Fri Aug 25 20:38:36 2006 UTC (13 years, 1 month ago) by maechler
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

Revision 1446 - Directory Listing
Modified Fri Aug 25 16:48:32 2006 UTC (13 years, 1 month ago) by bates
Change incorrect result class dgCMatrix to dgeMatrix.

Revision 1444 - Directory Listing
Modified Fri Aug 25 14:39:45 2006 UTC (13 years, 1 month ago) by maechler
a bit more "MatrixFactorization" ..

Revision 1443 - Directory Listing
Modified Fri Aug 25 10:44:48 2006 UTC (13 years, 1 month ago) by maechler
1st stab at "MatrixFactorization" class; exporting CHMfactor etc

Revision 1434 - Directory Listing
Modified Thu Aug 24 18:20:02 2006 UTC (13 years, 1 month ago) by bates
Added

Revision 1407 - Directory Listing
Modified Mon Aug 21 15:24:47 2006 UTC (13 years, 1 month ago) by maechler
rename class "LU" to "denseLU" and make "LU" virtual

Revision 1401 - Directory Listing
Modified Sun Aug 20 16:15:07 2006 UTC (13 years, 1 month ago) by bates
Document methods for qr.* generics

Revision 1392 - Directory Listing
Modified Fri Aug 18 16:59:15 2006 UTC (13 years, 2 months ago) by maechler
example++

Revision 1391 - Directory Listing
Modified Fri Aug 18 15:42:24 2006 UTC (13 years, 2 months ago) by maechler
small update; extend LU-class example

Revision 1389 - Directory Listing
Modified Fri Aug 18 13:53:33 2006 UTC (13 years, 2 months ago) by maechler
export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse

Revision 1385 - Directory Listing
Modified Thu Aug 17 22:30:01 2006 UTC (13 years, 2 months ago) by bates
Added solve methods for dgCMatrix and documentation

Revision 1383 - Directory Listing
Modified Thu Aug 17 13:57:53 2006 UTC (13 years, 2 months ago) by bates
add sparse LU and QR decompositions

Revision 1378 - Directory Listing
Modified Tue Aug 15 18:25:14 2006 UTC (13 years, 2 months ago) by maechler
update methods list

Revision 1370 - Directory Listing
Modified Mon Aug 14 19:00:02 2006 UTC (13 years, 2 months ago) by bates
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

Revision 1368 - Directory Listing
Modified Sat Aug 12 17:34:00 2006 UTC (13 years, 2 months ago) by bates
Generalize conversions

Revision 1358 - Directory Listing
Modified Tue Aug 8 16:27:28 2006 UTC (13 years, 2 months ago) by maechler
fix comment

Revision 1356 - Directory Listing
Modified Tue Aug 8 16:24:53 2006 UTC (13 years, 2 months ago) by maechler
enable more examples

Revision 1355 - Directory Listing
Modified Tue Aug 8 16:24:41 2006 UTC (13 years, 2 months ago) by maechler
better (comments in) examples

Revision 1351 - Directory Listing
Modified Mon Aug 7 16:51:14 2006 UTC (13 years, 2 months ago) by maechler
use speedier crossprod() for "dgC" - still slower than t(.) %*% .

Revision 1349 - Directory Listing
Modified Mon Aug 7 09:05:42 2006 UTC (13 years, 2 months ago) by maechler
tril() etc also for T* and Rsparse

Revision 1344 - Directory Listing
Modified Thu Aug 3 17:15:31 2006 UTC (13 years, 2 months ago) by maechler
add data(sleepstudy), needed because of LazyData: no

Revision 1342 - Directory Listing
Modified Tue Aug 1 20:26:45 2006 UTC (13 years, 2 months ago) by bates
hatTrace and warnings about boundary convergence

Revision 1341 - Directory Listing
Modified Tue Aug 1 17:55:57 2006 UTC (13 years, 2 months ago) by maechler
using \dQuote{} and drop nolonger existing 'random.effects'

Revision 1340 - Directory Listing
Modified Tue Aug 1 15:35:23 2006 UTC (13 years, 2 months ago) by bates
Document the caterpillar plot.

Revision 1337 - Directory Listing
Modified Mon Jul 31 23:05:46 2006 UTC (13 years, 2 months ago) by bates
Document postVar argument to ranef method

Revision 1335 - Directory Listing
Modified Mon Jul 31 12:11:35 2006 UTC (13 years, 2 months ago) by maechler
change unused class "correlation" to "corMatrix"

Revision 1334 - Directory Listing
Modified Mon Jul 31 12:11:16 2006 UTC (13 years, 2 months ago) by maechler
rm old remnant

Revision 1332 - Directory Listing
Modified Thu Jul 27 13:42:18 2006 UTC (13 years, 2 months ago) by maechler
more dgRMatrix coercions (5 days ago)

Revision 1331 - Directory Listing
Modified Sat Jul 22 17:59:53 2006 UTC (13 years, 2 months ago) by maechler
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

Revision 1329 - Directory Listing
Modified Fri Jul 21 06:47:06 2006 UTC (13 years, 2 months ago) by maechler
miscellaneous mostly related to sparse indexing

Revision 1328 - Directory Listing
Modified Fri Jul 21 06:46:36 2006 UTC (13 years, 2 months ago) by maechler
export isSymmetric()

Revision 1327 - Directory Listing
Modified Fri Jul 21 06:43:31 2006 UTC (13 years, 2 months ago) by maechler
add some SparseM <-> Matrix conversions

Revision 1323 - Directory Listing
Modified Mon Jul 17 18:34:45 2006 UTC (13 years, 3 months ago) by bates
Add coersion from CHMfactor to sparseMatrix

Revision 1315 - Directory Listing
Modified Mon Jul 10 16:08:05 2006 UTC (13 years, 3 months ago) by maechler
miscellaneous small things, including extended tests; see also ChangeLog

Revision 1314 - Directory Listing
Modified Mon Jul 10 15:23:48 2006 UTC (13 years, 3 months ago) by maechler
add lgCMatrix_diag()

Revision 1313 - Directory Listing
Modified Thu Jul 6 17:24:01 2006 UTC (13 years, 3 months ago) by bates
Updating documentation

Revision 1305 - Directory Listing
Modified Sat Jul 1 16:18:39 2006 UTC (13 years, 3 months ago) by maechler
coercion pMatrix -> Tsparse

Revision 1299 - Directory Listing
Modified Mon Jun 12 08:06:21 2006 UTC (13 years, 4 months ago) by maechler
mcmcsamp()[,"deviance"] was wrong column

Revision 1295 - Directory Listing
Modified Fri Jun 9 21:47:22 2006 UTC (13 years, 4 months ago) by maechler
coercion to and multiplication of diagonal and sparse matrices

Revision 1290 - Directory Listing
Modified Thu Jun 8 09:30:21 2006 UTC (13 years, 4 months ago) by maechler
implemented all 4 of {rowSums(), ... colMeans()}

Revision 1285 - Directory Listing
Modified Sat May 27 20:12:08 2006 UTC (13 years, 4 months ago) by maechler
a few small changes, comments - on the way to get to a better "Compare" (group method) approach

Revision 1282 - Directory Listing
Modified Wed May 24 17:00:12 2006 UTC (13 years, 4 months ago) by maechler
eliminate a few old "FIXME"s (and add a new one :-)

Revision 1281 - Directory Listing
Modified Wed May 24 14:44:59 2006 UTC (13 years, 4 months ago) by maechler
start massive use of \linkS4class{.}

Revision 1271 - Directory Listing
Modified Thu May 18 06:47:09 2006 UTC (13 years, 5 months ago) by maechler
some  "sparse <-> graph"  updates

Revision 1268 - Directory Listing
Modified Wed May 17 17:42:09 2006 UTC (13 years, 5 months ago) by bates
lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

Revision 1263 - Directory Listing
Modified Sun Apr 30 15:41:02 2006 UTC (13 years, 5 months ago) by bates
Add chol method for pedigree objects

Revision 1260 - Directory Listing
Modified Tue Apr 25 18:43:13 2006 UTC (13 years, 5 months ago) by bates
Extend example and add references for pedigree-class

Revision 1258 - Directory Listing
Modified Fri Apr 21 15:44:39 2006 UTC (13 years, 5 months ago) by maechler
make pedigree class more memory-efficient; add pedigree()

Revision 1257 - Directory Listing
Modified Wed Apr 19 14:22:07 2006 UTC (13 years, 6 months ago) by bates
document qqmath method for ranef.lmer objects

Revision 1254 - Directory Listing
Modified Wed Apr 19 09:17:50 2006 UTC (13 years, 6 months ago) by maechler
+ solve methods

Revision 1239 - Directory Listing
Modified Fri Mar 31 09:37:49 2006 UTC (13 years, 6 months ago) by maechler
fix some \link[*-class]{*}

Revision 1238 - Directory Listing
Modified Thu Mar 30 19:56:09 2006 UTC (13 years, 6 months ago) by maechler
coercions from dgC to triangular (dtC) and symmetric (dsC), etc

Revision 1237 - Directory Listing
Modified Thu Mar 30 15:23:47 2006 UTC (13 years, 6 months ago) by maechler
new interesting test dataset

Revision 1235 - Directory Listing
Modified Tue Mar 21 17:15:53 2006 UTC (13 years, 6 months ago) by maechler
update ("coef.lmer" class etc)

Revision 1228 - Directory Listing
Modified Wed Mar 15 17:43:34 2006 UTC (13 years, 7 months ago) by maechler
put "mm" and "y" datasets into list "KNex" and change the docu, examples, tests, and one vignette accordingly;
 ready for release of 0.995-6

Revision 1226 - Directory Listing
Modified Mon Mar 13 14:07:58 2006 UTC (13 years, 7 months ago) by maechler
sparse: "[<-" and better arithmetic; other tweaks

Revision 1224 - Directory Listing
Modified Mon Mar 13 13:05:33 2006 UTC (13 years, 7 months ago) by bates
Update documentation to new lmer class structure

Revision 1222 - Directory Listing
Modified Tue Mar 7 11:05:08 2006 UTC (13 years, 7 months ago) by maechler
lmer(): non-trivial summary() method -> summary.*mer classes

Revision 1220 - Directory Listing
Modified Fri Mar 3 18:22:35 2006 UTC (13 years, 7 months ago) by maechler
add more docu on (l)mer - methods

Revision 1216 - Directory Listing
Modified Wed Feb 8 17:57:31 2006 UTC (13 years, 8 months ago) by maechler
another half-baked lmer test; cosmetics

Revision 1215 - Directory Listing
Modified Wed Feb 8 17:54:57 2006 UTC (13 years, 8 months ago) by maechler
add simplistic "[<-" method for dgT

Revision 1213 - Directory Listing
Modified Tue Feb 7 23:44:07 2006 UTC (13 years, 8 months ago) by bates
Fix case of cbind(successes, failures) for lmer fitting a GLMM (see Changelog)

Revision 1205 - Directory Listing
Modified Tue Jan 24 21:03:04 2006 UTC (13 years, 8 months ago) by bates
Fix trivial memory leaks

Revision 1202 - Directory Listing
Modified Mon Jan 23 16:55:43 2006 UTC (13 years, 8 months ago) by maechler
add to tests: now also check  setAs("matrix", *)

Revision 1201 - Directory Listing
Modified Mon Jan 23 16:04:12 2006 UTC (13 years, 8 months ago) by maechler
Class cleanup; particularly ldense* ones

Revision 1199 - Directory Listing
Modified Mon Jan 23 15:02:13 2006 UTC (13 years, 8 months ago) by maechler
export RsparseMatrix

Revision 1189 - Directory Listing
Modified Fri Jan 20 18:13:39 2006 UTC (13 years, 8 months ago) by maechler
"dsy" no longer extends "dge"; other small fixes

Revision 1182 - Directory Listing
Modified Thu Jan 19 10:35:09 2006 UTC (13 years, 8 months ago) by maechler
s/example/examples/

Revision 1180 - Directory Listing
Modified Thu Jan 19 00:43:37 2006 UTC (13 years, 8 months ago) by bates
Over to Martin for release 0.995-2

Revision 1175 - Directory Listing
Modified Tue Jan 17 23:41:36 2006 UTC (13 years, 9 months ago) by bates
Munging the data frame

Revision 1174 - Directory Listing
Modified Mon Jan 16 20:03:48 2006 UTC (13 years, 9 months ago) by maechler
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings

Revision 1173 - Directory Listing
Modified Mon Jan 16 20:02:16 2006 UTC (13 years, 9 months ago) by maechler
remove @rcond everywhere, and @factors for triangular ones

Revision 1166 - Directory Listing
Modified Sun Jan 15 19:18:20 2006 UTC (13 years, 9 months ago) by bates
modifications to lmer and related classes

Revision 1165 - Directory Listing
Modified Sat Jan 14 23:41:55 2006 UTC (13 years, 9 months ago) by maechler
new coercion to dtr* and dsy* using isSymmetric() and isTriangular(); fix validity checking; some class descriptions

Revision 1163 - Directory Listing
Modified Sat Jan 14 23:13:20 2006 UTC (13 years, 9 months ago) by maechler
export comp*- and general- Matrix classes

Revision 1159 - Directory Listing
Modified Fri Jan 13 23:44:16 2006 UTC (13 years, 9 months ago) by bates
Updating the list of slots now that the factor slot is moved to compMatrix

Revision 1149 - Directory Listing
Modified Thu Jan 12 03:40:07 2006 UTC (13 years, 9 months ago) by bates
Updating documentation for new version of mer objects

Revision 1146 - Directory Listing
Modified Thu Jan 12 03:35:32 2006 UTC (13 years, 9 months ago) by bates
Updating documentation for new version of mer objects

Revision 1144 - Directory Listing
Modified Thu Jan 12 03:20:47 2006 UTC (13 years, 9 months ago) by bates
Remove documentation for outmoded classes

Revision 1109 - Directory Listing
Modified Tue Jan 3 16:42:31 2006 UTC (13 years, 9 months ago) by maechler
"diagonalMatrix" class and subclasses with a few methods; very basic "ltTMatrix" methods

Revision 1098 - Directory Listing
Modified Thu Dec 29 11:38:59 2005 UTC (13 years, 9 months ago) by maechler
some 2-argument-tcrossprod methods (and test svn)

Revision 1087 - Directory Listing
Modified Fri Dec 9 20:55:39 2005 UTC (13 years, 10 months ago) by maechler
make tcrossprod() use 2 arguments (x, y=NULL)

Revision 1062 - Directory Listing
Modified Sat Nov 26 16:29:06 2005 UTC (13 years, 10 months ago) by bates
simulate generic is now in stats package

Revision 1059 - Directory Listing
Modified Wed Nov 23 22:20:13 2005 UTC (13 years, 10 months ago) by bates
Matrix multiplication and coersion at higher level

Revision 976 - Directory Listing
Modified Fri Oct 7 20:18:29 2005 UTC (14 years ago) by maechler
more examples; update

Revision 959 - Directory Listing
Modified Sat Oct 1 20:10:20 2005 UTC (14 years ago) by maechler
dtC -> dgC coercion

Revision 956 - Directory Listing
Modified Fri Sep 30 17:28:00 2005 UTC (14 years ago) by maechler
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...

Revision 954 - Directory Listing
Modified Wed Sep 28 19:34:31 2005 UTC (14 years ago) by maechler
more "Compare" and some "!" methods; expm() for sparse; updated tests

Revision 953 - Directory Listing
Modified Wed Sep 28 19:31:36 2005 UTC (14 years ago) by maechler
move "factors" slot to "Matrix"

Revision 946 - Directory Listing
Modified Wed Sep 28 08:56:42 2005 UTC (14 years ago) by maechler
some "Summary" methods; some "Compare" group methods; logical dense matrices

Revision 925 - Directory Listing
Modified Mon Sep 19 19:01:31 2005 UTC (14 years ago) by maechler
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more  "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

Revision 924 - Directory Listing
Modified Mon Sep 19 08:40:29 2005 UTC (14 years ago) by maechler
gTM* -> TsparseM*

Revision 922 - Directory Listing
Modified Sun Sep 18 16:33:54 2005 UTC (14 years, 1 month ago) by bates
Added CHOLMOD-based C functions.  Still need methods defined in R and some error checking

Revision 908 - Directory Listing
Modified Thu Sep 8 15:30:08 2005 UTC (14 years, 1 month ago) by maechler
cbind() / cbind2() methods for R >= 2.2.0

Revision 901 - Directory Listing
Modified Tue Sep 6 01:26:11 2005 UTC (14 years, 1 month ago) by bates
Add "start" argument to lmer

Revision 893 - Directory Listing
Modified Sat Sep 3 21:54:10 2005 UTC (14 years, 1 month ago) by maechler
workaround Rdconv and Slot-section-parsing buglets

Revision 891 - Directory Listing
Modified Fri Sep 2 13:39:57 2005 UTC (14 years, 1 month ago) by maechler
new symmetric* and triangular* classes` docu: link to them in other places

Revision 889 - Directory Listing
Modified Thu Sep 1 14:19:01 2005 UTC (14 years, 1 month ago) by bates
Typo

Revision 888 - Directory Listing
Modified Thu Sep 1 13:46:21 2005 UTC (14 years, 1 month ago) by bates
New simulate method for lmer objects

Revision 886 - Directory Listing
Modified Wed Aug 31 17:49:47 2005 UTC (14 years, 1 month ago) by maechler
new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do

Revision 882 - Directory Listing
Modified Tue Aug 30 14:37:24 2005 UTC (14 years, 1 month ago) by bates
Corrected a typo

Revision 880 - Directory Listing
Modified Tue Aug 30 14:36:41 2005 UTC (14 years, 1 month ago) by bates
More coercion methods

Revision 879 - Directory Listing
Modified Tue Aug 30 14:35:05 2005 UTC (14 years, 1 month ago) by bates
Added simulate generic and method

Revision 875 - Directory Listing
Modified Sat Aug 27 21:29:21 2005 UTC (14 years, 1 month ago) by maechler
indexing (mainly denseMatrix) - using "vector" indices

Revision 871 - Directory Listing
Modified Fri Aug 26 17:26:49 2005 UTC (14 years, 1 month ago) by maechler
Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples

Revision 869 - Directory Listing
Modified Fri Aug 26 17:23:49 2005 UTC (14 years, 1 month ago) by maechler
better explain diag="U" for dtpMatrix

Revision 868 - Directory Listing
Modified Fri Aug 19 17:01:11 2005 UTC (14 years, 1 month ago) by maechler
printing of sparse logicals; "[" reorganization (part 1)

Revision 867 - Directory Listing
Modified Fri Aug 19 16:59:46 2005 UTC (14 years, 1 month ago) by maechler
new "gTMatrix" virtual class

Revision 863 - Directory Listing
Modified Thu Aug 18 21:31:31 2005 UTC (14 years, 2 months ago) by bates
Release 0.98-5

Revision 858 - Directory Listing
Modified Wed Aug 17 05:37:27 2005 UTC (14 years, 2 months ago) by maechler
line wrap; + example

Revision 857 - Directory Listing
Modified Tue Aug 16 22:19:58 2005 UTC (14 years, 2 months ago) by bates
Change method of reading Harwell-Boeing matrix format and change example

Revision 856 - Directory Listing
Modified Tue Aug 16 20:20:13 2005 UTC (14 years, 2 months ago) by maechler
small fixups

Revision 853 - Directory Listing
Modified Tue Aug 16 18:03:01 2005 UTC (14 years, 2 months ago) by bates
Move documentation for readHB and readMM to man/externalFormats.Rd

Revision 851 - Directory Listing
Modified Tue Aug 16 17:39:38 2005 UTC (14 years, 2 months ago) by maechler
export  dgR*, dsR* & dtR* Matrix - and "fix" stubs

Revision 849 - Directory Listing
Modified Tue Aug 16 17:37:09 2005 UTC (14 years, 2 months ago) by maechler
mv \title

Revision 848 - Directory Listing
Modified Thu Aug 11 07:41:59 2005 UTC (14 years, 2 months ago) by maechler
+"denseMatrix" class; export defined but unused classes

Revision 837 - Directory Listing
Modified Mon Aug 8 14:58:55 2005 UTC (14 years, 2 months ago) by bates
Simplify plots of examples in mcmcsamp by making them 1000 points only

Revision 836 - Directory Listing
Modified Mon Aug 8 13:37:04 2005 UTC (14 years, 2 months ago) by maechler
added {tolerance} [was not saved at last "commit"]

Revision 835 - Directory Listing
Modified Mon Aug 8 13:33:18 2005 UTC (14 years, 2 months ago) by bates
Add writeHB and writeMM methods and generic

Revision 834 - Directory Listing
Modified Mon Aug 8 08:36:34 2005 UTC (14 years, 2 months ago) by maechler
misc comments/formatting

Revision 832 - Directory Listing
Modified Mon Aug 8 08:33:55 2005 UTC (14 years, 2 months ago) by maechler
lmer()`s "model = T/F" and control arguments; add comments and "FIXME"s

Revision 830 - Directory Listing
Modified Mon Aug 8 08:22:44 2005 UTC (14 years, 2 months ago) by maechler
add examples + FIXME note

Revision 828 - Directory Listing
Modified Sun Aug 7 21:59:32 2005 UTC (14 years, 2 months ago) by bates
Remove OrchardSprays examples

Revision 826 - Directory Listing
Modified Sun Aug 7 16:28:57 2005 UTC (14 years, 2 months ago) by bates
add examples of external formats

Revision 825 - Directory Listing
Modified Sun Aug 7 15:22:33 2005 UTC (14 years, 2 months ago) by bates
Harwell-Boeing and MatrixMarket formats

Revision 824 - Directory Listing
Modified Sat Aug 6 20:01:51 2005 UTC (14 years, 2 months ago) by bates
Allow mcmcsamp on transformed parameters

Revision 823 - Directory Listing
Modified Sat Jul 30 21:35:38 2005 UTC (14 years, 2 months ago) by maechler
+ tcrossprod() method for simple "matrix" and "numeric"

Revision 822 - Directory Listing
Modified Sat Jul 30 21:34:15 2005 UTC (14 years, 2 months ago) by maechler
get rid of \synopsis{} and document missing args

Revision 820 - Directory Listing
Modified Wed Jul 27 23:07:04 2005 UTC (14 years, 2 months ago) by bates
Version 0.98-1

Revision 789 - Directory Listing
Modified Sat Jul 2 20:55:50 2005 UTC (14 years, 3 months ago) by maechler
separate docu for ddenseMatrix class

Revision 788 - Directory Listing
Modified Fri Jul 1 10:19:36 2005 UTC (14 years, 3 months ago) by maechler
add concept for GLMM

Revision 772 - Directory Listing
Modified Thu Jun 9 16:57:55 2005 UTC (14 years, 4 months ago) by bates
Prepare for release 0.96-1

Revision 769 - Directory Listing
Modified Wed Jun 8 23:47:45 2005 UTC (14 years, 4 months ago) by bates
Moving lmer to the Matrix package

Revision 768 - Directory Listing
Modified Wed Jun 8 17:19:21 2005 UTC (14 years, 4 months ago) by maechler
re-instantiate old examples / tests since R-devel bug seems gone now

Revision 758 - Directory Listing
Modified Mon Jun 6 15:46:28 2005 UTC (14 years, 4 months ago) by bates
Fix matrix multiplication methods

Revision 757 - Directory Listing
Modified Mon Jun 6 15:39:04 2005 UTC (14 years, 4 months ago) by bates
Comment out problematic tests

Revision 744 - Directory Listing
Modified Tue May 17 17:46:19 2005 UTC (14 years, 5 months ago) by bates
Adding logical sparse matrix methods

Revision 735 - Directory Listing
Modified Tue May 17 17:20:01 2005 UTC (14 years, 5 months ago) by bates
Adding logical sparse matrix methods

Revision 725 - Directory Listing
Modified Tue May 10 14:50:39 2005 UTC (14 years, 5 months ago) by bates
Release 0.95-8 with bug fix for sparse symmetric solve

Revision 723 - Directory Listing
Modified Tue May 10 01:42:05 2005 UTC (14 years, 5 months ago) by bates
More logical sparse matrix methods

Revision 722 - Directory Listing
Modified Mon May 9 14:29:12 2005 UTC (14 years, 5 months ago) by bates


Revision 720 - Directory Listing
Modified Mon May 9 01:32:44 2005 UTC (14 years, 5 months ago) by bates
Methods for logical general sparse matrices

Revision 714 - Directory Listing
Modified Fri May 6 23:52:34 2005 UTC (14 years, 5 months ago) by bates
Added colSums and friends for dgeMatrix class

Revision 702 - Directory Listing
Modified Thu Apr 21 13:00:36 2005 UTC (14 years, 5 months ago) by bates
Moving Doxyfile

Revision 697 - Directory Listing
Modified Mon Apr 18 20:18:46 2005 UTC (14 years, 6 months ago) by maechler
numeric x dgeMatrix : for solve etc

Revision 687 - Directory Listing
Modified Fri Apr 1 07:36:09 2005 UTC (14 years, 6 months ago) by maechler
"[" and show() methods for sparse matrices => RFC

Revision 686 - Directory Listing
Modified Thu Mar 31 21:19:35 2005 UTC (14 years, 6 months ago) by bates
Create "fallback" methods for any kind of numeric, dense matrix

Revision 685 - Directory Listing
Modified Thu Mar 31 18:17:28 2005 UTC (14 years, 6 months ago) by bates
Multiplication operations for sparseMatrix and ddenseMatrix

Revision 683 - Directory Listing
Modified Thu Mar 31 17:10:16 2005 UTC (14 years, 6 months ago) by bates
Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class

Revision 677 - Directory Listing
Modified Mon Mar 28 14:03:32 2005 UTC (14 years, 6 months ago) by bates
Added dgRMatrix methods and documentation

Revision 676 - Directory Listing
Modified Sat Mar 26 15:59:18 2005 UTC (14 years, 6 months ago) by maechler
+ virtual "sparseMatrix" classes

Revision 675 - Directory Listing
Modified Sat Mar 26 11:16:05 2005 UTC (14 years, 6 months ago) by maechler
export csc_tcrossprod - and add examples & test for tcrossprod()

Revision 665 - Directory Listing
Modified Thu Mar 24 13:06:09 2005 UTC (14 years, 6 months ago) by bates
Removing the ssclme and sscCrosstab classes

Revision 664 - Directory Listing
Modified Thu Mar 24 13:00:09 2005 UTC (14 years, 6 months ago) by maechler
make virtual classes "VIRTUAL"

Revision 663 - Directory Listing
Modified Wed Mar 23 17:36:48 2005 UTC (14 years, 6 months ago) by bates
Moving all ssclme-related R code to the lme4 package

Revision 659 - Directory Listing
Modified Thu Mar 17 17:53:10 2005 UTC (14 years, 7 months ago) by maechler
cosmetic; examples

Revision 658 - Directory Listing
Modified Thu Mar 17 17:52:06 2005 UTC (14 years, 7 months ago) by maechler
+ as.matrix() + unname() method

Revision 657 - Directory Listing
Modified Wed Mar 16 16:57:52 2005 UTC (14 years, 7 months ago) by maechler
more %*% and setAs(); tests too

Revision 654 - Directory Listing
Modified Wed Mar 16 16:18:33 2005 UTC (14 years, 7 months ago) by bates
Generalize matrix multiplication and solve methods

Revision 652 - Directory Listing
Modified Wed Mar 16 01:08:36 2005 UTC (14 years, 7 months ago) by bates
Updates to multiplication and other methods

Revision 651 - Directory Listing
Modified Tue Mar 15 01:54:50 2005 UTC (14 years, 7 months ago) by bates
Document methods and add links

Revision 650 - Directory Listing
Modified Tue Mar 15 01:53:58 2005 UTC (14 years, 7 months ago) by bates
Correct the coercion to matrix

Revision 647 - Directory Listing
Modified Tue Mar 15 00:56:35 2005 UTC (14 years, 7 months ago) by bates
Document methods for dppMatrix class

Revision 646 - Directory Listing
Modified Tue Mar 15 00:52:35 2005 UTC (14 years, 7 months ago) by bates
'unpack' methods

Revision 642 - Directory Listing
Modified Tue Mar 15 00:49:32 2005 UTC (14 years, 7 months ago) by bates
'unpack' methods

Revision 638 - Directory Listing
Modified Tue Mar 15 00:43:21 2005 UTC (14 years, 7 months ago) by bates
permutation matrix class

Revision 636 - Directory Listing
Modified Tue Mar 15 00:40:58 2005 UTC (14 years, 7 months ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 634 - Directory Listing
Modified Sun Mar 13 21:01:45 2005 UTC (14 years, 7 months ago) by maechler
updates

Revision 631 - Directory Listing
Modified Sun Mar 13 04:34:52 2005 UTC (14 years, 7 months ago) by bates
Add BunchKaufman factorization

Revision 628 - Directory Listing
Modified Thu Mar 10 17:57:47 2005 UTC (14 years, 7 months ago) by maechler
more  %*% methods; some dimnames in C (untested); checks extended

Revision 627 - Directory Listing
Modified Mon Mar 7 17:36:38 2005 UTC (14 years, 7 months ago) by maechler
oops! I believed the outdated docu -- it *IS* an S4 generic, really!

Revision 626 - Directory Listing
Modified Mon Mar 7 17:19:03 2005 UTC (14 years, 7 months ago) by maechler
cosmetic additions

Revision 621 - Directory Listing
Modified Sat Mar 5 21:23:09 2005 UTC (14 years, 7 months ago) by maechler
mainly changed \alias{}es for methods

Revision 611 - Directory Listing
Modified Fri Mar 4 17:34:45 2005 UTC (14 years, 7 months ago) by maechler
\alias{.} for the new methods

Revision 606 - Directory Listing
Modified Fri Mar 4 17:29:37 2005 UTC (14 years, 7 months ago) by maechler
add "dMatrix" group methods and doc file

Revision 602 - Directory Listing
Modified Fri Mar 4 12:48:40 2005 UTC (14 years, 7 months ago) by bates
Remove references to pdfactor

Revision 597 - Directory Listing
Modified Thu Mar 3 19:58:59 2005 UTC (14 years, 7 months ago) by bates
Methods and coercions for the dtpMatrix class

Revision 594 - Directory Listing
Modified Thu Mar 3 05:17:51 2005 UTC (14 years, 7 months ago) by bates
Remove pdfactor class

Revision 589 - Directory Listing
Modified Wed Mar 2 19:53:53 2005 UTC (14 years, 7 months ago) by bates
more coercions

Revision 579 - Directory Listing
Modified Sun Feb 27 00:04:16 2005 UTC (14 years, 7 months ago) by maechler
dimnames(), "dimnames() <-", better t(), etc

Revision 573 - Directory Listing
Modified Sat Feb 26 18:06:08 2005 UTC (14 years, 7 months ago) by maechler
more group methods and testing them

Revision 570 - Directory Listing
Modified Fri Feb 25 13:21:03 2005 UTC (14 years, 7 months ago) by bates
Move ScotsSec to mlmRev package

Revision 561 - Directory Listing
Modified Fri Feb 18 19:24:43 2005 UTC (14 years, 7 months ago) by bates
Release 0.95-1

Revision 558 - Directory Listing
Modified Thu Feb 17 18:12:34 2005 UTC (14 years, 8 months ago) by bates
coercion method documentation

Revision 547 - Directory Listing
Modified Tue Feb 15 22:09:25 2005 UTC (14 years, 8 months ago) by bates
Methods and coercions for the dtTMatrix class

Revision 542 - Directory Listing
Modified Thu Feb 10 17:30:10 2005 UTC (14 years, 8 months ago) by maechler
"Arith" group methods work!

Revision 540 - Directory Listing
Modified Thu Feb 10 14:32:59 2005 UTC (14 years, 8 months ago) by maechler
more "Done"

Revision 538 - Directory Listing
Modified Thu Feb 10 13:50:27 2005 UTC (14 years, 8 months ago) by maechler
add @Dimnames (-> new "mm")

Revision 528 - Directory Listing
Modified Mon Feb 7 10:52:50 2005 UTC (14 years, 8 months ago) by bates
Spelling mistake

Revision 527 - Directory Listing
Modified Mon Feb 7 10:52:37 2005 UTC (14 years, 8 months ago) by bates
Spelling mistake

Revision 519 - Directory Listing
Modified Sat Feb 5 14:25:56 2005 UTC (14 years, 8 months ago) by maechler
some matrix exponential tests

Revision 515 - Directory Listing
Modified Sat Feb 5 13:53:55 2005 UTC (14 years, 8 months ago) by maechler
example (and indentation)

Revision 514 - Directory Listing
Modified Fri Feb 4 23:57:12 2005 UTC (14 years, 8 months ago) by maechler
minor cleanup

Revision 508 - Directory Listing
Modified Fri Feb 4 18:22:28 2005 UTC (14 years, 8 months ago) by maechler
oops! (in example)

Revision 507 - Directory Listing
Modified Fri Feb 4 18:19:29 2005 UTC (14 years, 8 months ago) by maechler
2 typos

Revision 506 - Directory Listing
Modified Fri Feb 4 18:19:08 2005 UTC (14 years, 8 months ago) by maechler
cosmetic

Revision 505 - Directory Listing
Modified Fri Feb 4 18:18:48 2005 UTC (14 years, 8 months ago) by maechler
cosmetic;
call  image() in example

Revision 504 - Directory Listing
Modified Fri Feb 4 18:18:25 2005 UTC (14 years, 8 months ago) by maechler
add examples

Revision 503 - Directory Listing
Modified Fri Feb 4 18:18:06 2005 UTC (14 years, 8 months ago) by maechler
typo

Revision 502 - Directory Listing
Modified Fri Feb 4 18:17:53 2005 UTC (14 years, 8 months ago) by maechler
cosmetic

Revision 501 - Directory Listing
Modified Fri Feb 4 18:17:36 2005 UTC (14 years, 8 months ago) by maechler
update

Revision 500 - Directory Listing
Modified Fri Feb 4 18:17:18 2005 UTC (14 years, 8 months ago) by maechler
typo;
extend example with stopifnot()

Revision 495 - Directory Listing
Modified Thu Feb 3 18:48:31 2005 UTC (14 years, 8 months ago) by bates
Initial implementation of the Schur generic

Revision 492 - Directory Listing
Modified Thu Feb 3 14:24:03 2005 UTC (14 years, 8 months ago) by bates
Getting package to pass CMD check

Revision 489 - Directory Listing
Modified Wed Feb 2 19:12:03 2005 UTC (14 years, 8 months ago) by bates
renaming and rearranging classes

Revision 487 - Directory Listing
Modified Wed Feb 2 19:02:36 2005 UTC (14 years, 8 months ago) by bates
renaming and rearranging classes

Revision 486 - Directory Listing
Modified Wed Feb 2 17:41:09 2005 UTC (14 years, 8 months ago) by bates
renaming and rearranging classes

Revision 484 - Directory Listing
Modified Wed Feb 2 17:14:07 2005 UTC (14 years, 8 months ago) by bates
renaming and rearranging classes

Revision 481 - Directory Listing
Modified Wed Feb 2 15:01:50 2005 UTC (14 years, 8 months ago) by bates
Renaming and reorganizing classes

Revision 480 - Directory Listing
Modified Wed Feb 2 14:59:12 2005 UTC (14 years, 8 months ago) by bates
Renaming and reorganizing classes

Revision 476 - Directory Listing
Modified Wed Feb 2 11:51:24 2005 UTC (14 years, 8 months ago) by bates
Change name of slot from factorization to factors

Revision 462 - Directory Listing
Modified Sat Jan 29 14:10:36 2005 UTC (14 years, 8 months ago) by bates
Move lmer class to lme4

Revision 461 - Directory Listing
Modified Sat Jan 29 14:09:38 2005 UTC (14 years, 8 months ago) by bates
Add expm function

Revision 448 - Directory Listing
Modified Fri Jan 21 21:59:45 2005 UTC (14 years, 8 months ago) by bates
Release 0.8-23

Revision 422 - Directory Listing
Modified Tue Jan 4 23:45:15 2005 UTC (14 years, 9 months ago) by bates
Check in prior to leaving for Zuerich

Revision 420 - Directory Listing
Modified Mon Jan 3 19:26:58 2005 UTC (14 years, 9 months ago) by bates
Change to the lmer representation

Revision 396 - Directory Listing
Modified Thu Dec 16 19:14:49 2004 UTC (14 years, 10 months ago) by bates
Document new coercion and determinant methods

Revision 389 - Directory Listing
Modified Tue Dec 14 19:58:04 2004 UTC (14 years, 10 months ago) by bates
Remove bbCrosstab and references to it

Revision 374 - Directory Listing
Modified Sun Dec 5 13:55:19 2004 UTC (14 years, 10 months ago) by bates
renaming bbCrosstab to bCrosstab

Revision 352 - Directory Listing
Modified Tue Nov 23 15:41:03 2004 UTC (14 years, 10 months ago) by bates
remove redundant method alias

Revision 342 - Directory Listing
Modified Mon Nov 15 13:55:52 2004 UTC (14 years, 11 months ago) by bates
Updates for factorization name and default value

Revision 330 - Directory Listing
Modified Fri Nov 12 21:02:51 2004 UTC (14 years, 11 months ago) by bates
update methods

Revision 326 - Directory Listing
Modified Sat Nov 6 18:03:14 2004 UTC (14 years, 11 months ago) by bates
Add blocked/blocked cross-tabulation class

Revision 281 - Directory Listing
Modified Sat Oct 2 15:03:09 2004 UTC (15 years ago) by bates
Document cscBlocked class

Revision 263 - Directory Listing
Modified Thu Aug 26 16:01:35 2004 UTC (15 years, 1 month ago) by bates
extending lmeRep to multiple nested grouping factors

Revision 257 - Directory Listing
Modified Tue Aug 24 02:08:08 2004 UTC (15 years, 1 month ago) by bates
Remove taucs, add lmeRep, new release

Revision 241 - Directory Listing
Modified Wed Jul 7 18:23:11 2004 UTC (15 years, 3 months ago) by bates
Remove pdMat classes

Revision 229 - Directory Listing
Modified Tue Jun 15 21:37:15 2004 UTC (15 years, 4 months ago) by bates
Escape % characters in .Rd files

Revision 111 - Directory Listing
Modified Tue Apr 20 15:46:04 2004 UTC (15 years, 5 months ago) by bates
Release 0.8-5

Revision 79 - Directory Listing
Modified Wed Apr 14 22:55:10 2004 UTC (15 years, 6 months ago) by bates
Documentation updates

Revision 72 - Directory Listing
Modified Mon Apr 12 22:25:55 2004 UTC (15 years, 6 months ago) by bates
added R version of groupedPerm function, corrected sscCrosstab arguments

Revision 48 - Directory Listing
Modified Tue Apr 6 02:25:26 2004 UTC (15 years, 6 months ago) by bates
Cleaning up from R CMD check

Revision 10 - Directory Listing
Added Mon Mar 22 20:20:05 2004 UTC (15 years, 6 months ago) by bates
Initial import

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