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Sticky Revision:

Revision 2093 - Directory Listing
Modified Sat Feb 24 15:01:23 2018 UTC (12 months, 4 weeks ago) by jeanlobry
line > 100 characters split

Revision 2091 - Directory Listing
Modified Sat Feb 24 11:12:13 2018 UTC (12 months, 4 weeks ago) by jeanlobry
 

Revision 2062 - Directory Listing
Modified Mon Jul 17 07:20:40 2017 UTC (20 months, 1 week ago) by jeanlobry
Reverting to previous: still fails on windows

Revision 2061 - Directory Listing
Modified Mon Jul 17 06:36:34 2017 UTC (20 months, 1 week ago) by jeanlobry
to see if kakstorture still fails on windows

Revision 2059 - Directory Listing
Modified Tue Jul 4 16:37:40 2017 UTC (20 months, 2 weeks ago) by jeanlobry
Adding credit to Pamilo and Bianchi 1993

Revision 2058 - Directory Listing
Modified Tue Jul 4 16:10:09 2017 UTC (20 months, 2 weeks ago) by jeanlobry
Adding the original reference for Ka and Ks computation, that is Li et al. 1985

Revision 2057 - Directory Listing
Modified Tue Jul 4 13:07:40 2017 UTC (20 months, 2 weeks ago) by jeanlobry
Failed on windows

Revision 2054 - Directory Listing
Modified Tue Jul 4 11:29:46 2017 UTC (20 months, 3 weeks ago) by jeanlobry
new test file for kaks

Revision 2053 - Directory Listing
Modified Tue Jul 4 11:29:20 2017 UTC (20 months, 3 weeks ago) by jeanlobry
new test file for kaks

Revision 2047 - Directory Listing
Modified Mon Jul 3 17:36:31 2017 UTC (20 months, 3 weeks ago) by jeanlobry
adding the new argument rmgap to kaks

Revision 2042 - Directory Listing
Modified Mon Jul 3 13:05:23 2017 UTC (20 months, 3 weeks ago) by jeanlobry
more exactly to 9.999999

Revision 2041 - Directory Listing
Modified Mon Jul 3 13:00:02 2017 UTC (20 months, 3 weeks ago) by jeanlobry
adding a routine test to check that non-finite values are never returned by kaks() function

Revision 2039 - Directory Listing
Modified Mon Jul 3 11:21:21 2017 UTC (20 months, 3 weeks ago) by jeanlobry
turning on again kaks test

Revision 2031 - Directory Listing
Modified Wed Apr 5 08:49:19 2017 UTC (23 months, 2 weeks ago) by jeanlobry
to fix invalid URL

Revision 2029 - Directory Listing
Modified Wed Apr 5 08:11:55 2017 UTC (23 months, 2 weeks ago) by jeanlobry
to fix invalid URL

Revision 2025 - Directory Listing
Modified Fri Oct 14 16:18:55 2016 UTC (2 years, 5 months ago) by jeanlobry
fixing a bug in dotchart.uco

Revision 2022 - Directory Listing
Modified Thu Oct 13 16:01:31 2016 UTC (2 years, 5 months ago) by jeanlobry
precisions about the data

Revision 2017 - Directory Listing
Modified Wed Oct 12 12:16:31 2016 UTC (2 years, 5 months ago) by simonpenel
gcO2.Rd: correction de l'url http://pbil.univ-lyon1.fr/R/donnees/gcO2.txt

Revision 2011 - Directory Listing
Modified Sun Oct 9 18:27:21 2016 UTC (2 years, 5 months ago) by jeanlobry
 

Revision 2010 - Directory Listing
Modified Sun Oct 9 18:27:00 2016 UTC (2 years, 5 months ago) by jeanlobry
 

Revision 2007 - Directory Listing
Modified Sun Oct 9 11:38:54 2016 UTC (2 years, 5 months ago) by jeanlobry
how to reproduce figure 2 from Galtier & Lobry 1997

Revision 2005 - Directory Listing
Modified Sun Oct 9 11:26:32 2016 UTC (2 years, 5 months ago) by jeanlobry
 

Revision 2002 - Directory Listing
Modified Wed Oct 5 19:32:02 2016 UTC (2 years, 5 months ago) by jeanlobry
Three new genetic codes

Revision 1997 - Directory Listing
Modified Wed Oct 5 17:39:30 2016 UTC (2 years, 5 months ago) by jeanlobry
three more genetic codes

Revision 1980 - Directory Listing
Modified Tue Jul 12 17:08:34 2016 UTC (2 years, 8 months ago) by jeanlobry
adding a zlib argument to extractseqs

Revision 1976 - Directory Listing
Modified Fri Jul 1 20:58:47 2016 UTC (2 years, 8 months ago) by jeanlobry
12 cm is OK for the reference manual

Revision 1974 - Directory Listing
Modified Fri Jul 1 11:55:21 2016 UTC (2 years, 8 months ago) by jeanlobry
adding a picture in waterabs data documentation

Revision 1973 - Directory Listing
Modified Fri Jul 1 07:48:32 2016 UTC (2 years, 8 months ago) by jeanlobry
backslash does not work

Revision 1972 - Directory Listing
Modified Thu Jun 30 19:19:49 2016 UTC (2 years, 8 months ago) by jeanlobry
essai du double anti-barre inverse

Revision 1971 - Directory Listing
Modified Thu Jun 30 18:33:09 2016 UTC (2 years, 8 months ago) by jeanlobry
adding figures in the dia.db.growth function

Revision 1970 - Directory Listing
Modified Thu Jun 30 17:44:29 2016 UTC (2 years, 8 months ago) by jeanlobry
adding a figure in the chargaff dataset documentation

Revision 1969 - Directory Listing
Modified Thu Jun 30 17:08:16 2016 UTC (2 years, 8 months ago) by jeanlobry
adding a figure in aacost data documentation

Revision 1968 - Directory Listing
Modified Thu Jun 30 17:00:35 2016 UTC (2 years, 8 months ago) by jeanlobry
too fat

Revision 1967 - Directory Listing
Modified Thu Jun 30 17:00:08 2016 UTC (2 years, 8 months ago) by jeanlobry
too fat

Revision 1966 - Directory Listing
Modified Thu Jun 30 16:32:02 2016 UTC (2 years, 8 months ago) by jeanlobry
typo

Revision 1965 - Directory Listing
Modified Thu Jun 30 16:29:45 2016 UTC (2 years, 8 months ago) by jeanlobry
Adding a figure in m16j data documentation

Revision 1963 - Directory Listing
Modified Thu Jun 30 12:45:40 2016 UTC (2 years, 8 months ago) by jeanlobry
e-mail in biomserv no more valid

Revision 1957 - Directory Listing
Modified Tue Jun 21 12:40:42 2016 UTC (2 years, 9 months ago) by jeanlobry
gb2fasta now uses a local file example

Revision 1954 - Directory Listing
Modified Tue Jun 21 08:28:48 2016 UTC (2 years, 9 months ago) by jeanlobry
Example of a MAQ binary fasta file

Revision 1952 - Directory Listing
Modified Tue Jun 21 08:15:47 2016 UTC (2 years, 9 months ago) by jeanlobry
example of how to export sequences in a FASTA file

Revision 1951 - Directory Listing
Modified Tue Jun 21 08:10:03 2016 UTC (2 years, 9 months ago) by jeanlobry
adding doc about fasta file extension names

Revision 1944 - Directory Listing
Modified Tue Jun 7 10:32:48 2016 UTC (2 years, 9 months ago) by jeanlobry
Put in dont run the example that needs internet connection

Revision 1943 - Directory Listing
Modified Tue Jun 7 10:28:01 2016 UTC (2 years, 9 months ago) by jeanlobry
Fixing the reference to MAQ

Revision 1938 - Directory Listing
Modified Mon Jun 6 11:55:26 2016 UTC (2 years, 9 months ago) by simonpenel
Corrected URL in choosebank.Rd

Revision 1937 - Directory Listing
Modified Mon Jun 6 09:00:02 2016 UTC (2 years, 9 months ago) by simonpenel
Corrected URL in EXP.Rd

Revision 1935 - Directory Listing
Modified Fri Jun 3 17:31:51 2016 UTC (2 years, 9 months ago) by jeanlobry
Fixing microbiology today URL

Revision 1934 - Directory Listing
Modified Fri Jun 3 17:26:43 2016 UTC (2 years, 9 months ago) by jeanlobry
Fixing iupac URL

Revision 1933 - Directory Listing
Modified Fri Jun 3 17:21:44 2016 UTC (2 years, 9 months ago) by jeanlobry
Fixing EMBOSS URL

Revision 1932 - Directory Listing
Modified Fri Jun 3 17:09:21 2016 UTC (2 years, 9 months ago) by jeanlobry
Moving URL pbil.univ-lyon1.fr to doua.prabi.fr

Revision 1931 - Directory Listing
Modified Fri Jun 3 16:29:25 2016 UTC (2 years, 9 months ago) by jeanlobry
typo

Revision 1929 - Directory Listing
Modified Fri Jun 3 16:25:25 2016 UTC (2 years, 9 months ago) by jeanlobry
authors polishing including UTF-8

Revision 1902 - Directory Listing
Modified Thu Jun 2 14:27:43 2016 UTC (2 years, 9 months ago) by jeanlobry
documentation bug fix and UTF-8

Revision 1899 - Directory Listing
Modified Thu Jun 2 12:58:01 2016 UTC (2 years, 9 months ago) by jeanlobry
file updates

Revision 1894 - Directory Listing
Modified Thu Jun 2 11:55:59 2016 UTC (2 years, 9 months ago) by jeanlobry
typo

Revision 1892 - Directory Listing
Modified Thu Jun 2 11:36:01 2016 UTC (2 years, 9 months ago) by jeanlobry
using the gzipped ct.fasta.gz

Revision 1891 - Directory Listing
Modified Thu Jun 2 11:27:24 2016 UTC (2 years, 9 months ago) by jeanlobry
example with a gzipped file

Revision 1886 - Directory Listing
Modified Thu Jun 2 09:22:42 2016 UTC (2 years, 9 months ago) by jeanlobry
updating file names

Revision 1883 - Directory Listing
Modified Wed Jun 1 18:38:45 2016 UTC (2 years, 9 months ago) by jeanlobry
adding observed behaviour today

Revision 1882 - Directory Listing
Modified Wed Jun 1 18:32:46 2016 UTC (2 years, 9 months ago) by jeanlobry
dontrun no more true

Revision 1881 - Directory Listing
Modified Wed Jun 1 18:31:23 2016 UTC (2 years, 9 months ago) by jeanlobry
dontrun no more true

Revision 1880 - Directory Listing
Modified Wed Jun 1 18:30:05 2016 UTC (2 years, 9 months ago) by jeanlobry
query assignment

Revision 1879 - Directory Listing
Modified Wed Jun 1 18:28:58 2016 UTC (2 years, 9 months ago) by jeanlobry
query assignment

Revision 1878 - Directory Listing
Modified Wed Jun 1 18:27:59 2016 UTC (2 years, 9 months ago) by jeanlobry
query assignment

Revision 1877 - Directory Listing
Modified Wed Jun 1 18:27:22 2016 UTC (2 years, 9 months ago) by jeanlobry
dontrun no more true

Revision 1876 - Directory Listing
Modified Wed Jun 1 18:24:36 2016 UTC (2 years, 9 months ago) by jeanlobry
query assignment

Revision 1875 - Directory Listing
Modified Wed Jun 1 18:22:01 2016 UTC (2 years, 9 months ago) by jeanlobry
query assignment

Revision 1874 - Directory Listing
Modified Wed Jun 1 18:21:18 2016 UTC (2 years, 9 months ago) by jeanlobry
query assignment

Revision 1873 - Directory Listing
Modified Wed Jun 1 18:15:32 2016 UTC (2 years, 9 months ago) by jeanlobry
query assignment

Revision 1872 - Directory Listing
Modified Wed Jun 1 18:12:41 2016 UTC (2 years, 9 months ago) by jeanlobry
dontrun no more true

Revision 1871 - Directory Listing
Modified Wed Jun 1 17:51:30 2016 UTC (2 years, 9 months ago) by jeanlobry
dontrun no more true

Revision 1870 - Directory Listing
Modified Wed Jun 1 17:49:07 2016 UTC (2 years, 9 months ago) by jeanlobry
URL no more accessible

Revision 1869 - Directory Listing
Modified Wed Jun 1 17:39:45 2016 UTC (2 years, 9 months ago) by jeanlobry
query assignment

Revision 1868 - Directory Listing
Modified Wed Jun 1 17:32:14 2016 UTC (2 years, 9 months ago) by jeanlobry
query assignment

Revision 1867 - Directory Listing
Modified Wed Jun 1 17:29:23 2016 UTC (2 years, 9 months ago) by jeanlobry
504 is expected for SUBINLNG in emblTP

Revision 1828 - Directory Listing
Modified Thu Nov 27 14:50:55 2014 UTC (4 years, 3 months ago) by simonpenel
Now goldtable15Dec07 is available on the ftp of pbil

Revision 1826 - Directory Listing
Modified Thu Nov 27 11:05:49 2014 UTC (4 years, 3 months ago) by simonpenel
Now acces to voluminous data is done via ftp, changing examples

Revision 1823 - Directory Listing
Modified Wed Nov 26 13:28:04 2014 UTC (4 years, 3 months ago) by simonpenel
Changing sequence name in  plot.SeqAcnucWeb example in order to process more than 1 sub-sequence type

Revision 1821 - Directory Listing
Modified Wed Nov 26 13:13:43 2014 UTC (4 years, 3 months ago) by simonpenel
Changing acnuc database in example

Revision 1820 - Directory Listing
Modified Wed Nov 26 10:34:39 2014 UTC (4 years, 3 months ago) by simonpenel
Modifications  of  examples involvng the query function according to
the new features of R-3.1.2 : it is not possible to change an object
belonging the global environment from a package. Eaxmples have been 
modified according to a suggestion from Tang Chin Cheung.
 
 


Revision 1819 - Directory Listing
Modified Wed Nov 26 09:12:04 2014 UTC (4 years, 3 months ago) by simonpenel
Remplce SwissprotTP by EmblTP

Revision 1817 - Directory Listing
Modified Thu Nov 6 17:09:25 2014 UTC (4 years, 4 months ago) by simonpenel
Modification of wrong url, setting example in dotchart.uco to dontrun

Revision 1816 - Directory Listing
Modified Wed Nov 5 16:53:58 2014 UTC (4 years, 4 months ago) by simonpenel
Start fusion with the 3.0-9 version from CRAN which is ok for  R-3.1.2

Revision 1804 - Directory Listing
Modified Tue Jun 10 20:23:47 2014 UTC (4 years, 9 months ago) by jeanlobry
add NS and NK in documentation

Revision 1795 - Directory Listing
Modified Fri Jun 6 17:07:05 2014 UTC (4 years, 9 months ago) by jeanlobry
default broken link fixed

Revision 1781 - Directory Listing
Modified Fri Jun 6 10:26:33 2014 UTC (4 years, 9 months ago) by jeanlobry
add an as.string argument so that write.fasta can handle sequences when provided as strings

Revision 1777 - Directory Listing
Modified Thu Jan 30 14:39:20 2014 UTC (5 years, 1 month ago) by simonpenel
In function dist.alignment with nucleotides sequences, if gap option is set to 1, gaps will be counted in the identity measure (thanks to Peter Hraber)

Revision 1767 - Directory Listing
Modified Fri Feb 17 14:29:26 2012 UTC (7 years, 1 month ago) by simonpenel
Modification of kaks: option verbose display  values of L0,L2,L4,A0,A2,A4,B0,B2,B4 

Revision 1766 - Directory Listing
Modified Wed Feb 15 09:30:35 2012 UTC (7 years, 1 month ago) by simonpenel
Modification of example according to modification in the R code

Revision 1761 - Directory Listing
Modified Tue Sep 20 12:59:55 2011 UTC (7 years, 6 months ago) by simonpenel
Addition of the "recstat" function (Prediction of coding DNA sequences through the use of a  Correspondence Analysis). Guy Perriere is now part of the seqinr project.

Revision 1754 - Directory Listing
Modified Wed Jan 26 13:53:50 2011 UTC (8 years, 1 month ago) by simonpenel
Correcting the reference to Fitch 1966 (pointed  out by Leonor Palmeira) 

Revision 1750 - Directory Listing
Modified Fri Aug 27 07:59:33 2010 UTC (8 years, 6 months ago) by simonpenel
Correction  du format dans man/fasta.Rd et modification de la date.

Revision 1749 - Directory Listing
Modified Wed Aug 25 12:44:39 2010 UTC (8 years, 7 months ago) by simonpenel
Addition of documentation for alignment formats datasets

Revision 1747 - Directory Listing
Modified Mon May 24 09:28:25 2010 UTC (8 years, 10 months ago) by lobry
 

Revision 1739 - Directory Listing
Modified Sun Mar 7 11:13:46 2010 UTC (9 years ago) by lobry
rho() has gained a wordsize argument as suggested by Avril Coghlan

Revision 1735 - Directory Listing
Modified Sun Mar 7 10:03:59 2010 UTC (9 years ago) by lobry
word -> wordsize

Revision 1733 - Directory Listing
Modified Sat Mar 6 17:53:29 2010 UTC (9 years ago) by lobry
New quality control routine check

Revision 1730 - Directory Listing
Modified Sat Mar 6 17:33:31 2010 UTC (9 years ago) by lobry
No more File argument

Revision 1718 - Directory Listing
Modified Wed Nov 18 19:49:10 2009 UTC (9 years, 4 months ago) by lobry
plural

Revision 1716 - Directory Listing
Modified Wed Nov 18 19:41:33 2009 UTC (9 years, 4 months ago) by lobry
doc more explicit

Revision 1713 - Directory Listing
Modified Sun Nov 15 11:05:11 2009 UTC (9 years, 4 months ago) by lobry
new link to where.is.this.acc() function

Revision 1708 - Directory Listing
Modified Sun Nov 15 10:04:33 2009 UTC (9 years, 4 months ago) by lobry
stopAtFirst argument suggested by Avril Coghlan

Revision 1705 - Directory Listing
Modified Thu Nov 12 18:10:48 2009 UTC (9 years, 4 months ago) by lobry
looking for an accession number utility

Revision 1702 - Directory Listing
Modified Sat Nov 7 08:10:16 2009 UTC (9 years, 4 months ago) by lobry
fix the bug reported by Darren Obbard

Revision 1676 - Directory Listing
Modified Thu Nov 5 09:46:10 2009 UTC (9 years, 4 months ago) by lobry
new bib refs

Revision 1674 - Directory Listing
Modified Wed Nov 4 17:05:18 2009 UTC (9 years, 4 months ago) by lobry
extended deleted

Revision 1668 - Directory Listing
Modified Mon Oct 12 16:50:44 2009 UTC (9 years, 5 months ago) by lobry
no more File argument

Revision 1665 - Directory Listing
Modified Mon Oct 12 16:30:36 2009 UTC (9 years, 5 months ago) by lobry
new function for stutter ratio

Revision 1663 - Directory Listing
Modified Mon Oct 12 08:55:46 2009 UTC (9 years, 5 months ago) by lobry
 

Revision 1660 - Directory Listing
Modified Mon Oct 12 08:34:09 2009 UTC (9 years, 5 months ago) by lobry
new utility

Revision 1658 - Directory Listing
Modified Sun Oct 11 17:45:32 2009 UTC (9 years, 5 months ago) by lobry
remove the \v space in last example

Revision 1656 - Directory Listing
Modified Fri Oct 9 06:24:46 2009 UTC (9 years, 5 months ago) by lobry
new ylim

Revision 1654 - Directory Listing
Modified Fri Oct 9 06:19:42 2009 UTC (9 years, 5 months ago) by lobry
baseline and +1 shift corrected

Revision 1651 - Directory Listing
Modified Tue Sep 22 13:10:31 2009 UTC (9 years, 6 months ago) by lobry
 

Revision 1647 - Directory Listing
Modified Wed Sep 9 16:36:14 2009 UTC (9 years, 6 months ago) by lobry
typo

Revision 1646 - Directory Listing
Modified Wed Sep 9 16:28:24 2009 UTC (9 years, 6 months ago) by lobry
ComPairWise problem fixed

Revision 1645 - Directory Listing
Modified Sun Sep 6 09:14:12 2009 UTC (9 years, 6 months ago) by lobry
new example

Revision 1643 - Directory Listing
Modified Sat Sep 5 19:08:41 2009 UTC (9 years, 6 months ago) by lobry
 

Revision 1638 - Directory Listing
Modified Thu Sep 3 12:25:26 2009 UTC (9 years, 6 months ago) by lobry
 

Revision 1637 - Directory Listing
Modified Thu Sep 3 12:24:56 2009 UTC (9 years, 6 months ago) by lobry
 

Revision 1634 - Directory Listing
Modified Thu Sep 3 08:49:55 2009 UTC (9 years, 6 months ago) by lobry
 

Revision 1629 - Directory Listing
Modified Wed Aug 26 12:21:46 2009 UTC (9 years, 7 months ago) by lobry
new example

Revision 1627 - Directory Listing
Modified Wed Aug 26 09:47:23 2009 UTC (9 years, 7 months ago) by lobry
itemize -> describe 

Revision 1626 - Directory Listing
Modified Wed Aug 26 09:38:58 2009 UTC (9 years, 7 months ago) by lobry
 

Revision 1625 - Directory Listing
Modified Wed Aug 26 09:36:47 2009 UTC (9 years, 7 months ago) by lobry
 

Revision 1623 - Directory Listing
Modified Fri Jul 17 21:46:40 2009 UTC (9 years, 8 months ago) by lobry
new function

Revision 1622 - Directory Listing
Modified Fri Jul 17 21:46:01 2009 UTC (9 years, 8 months ago) by lobry
new function

Revision 1617 - Directory Listing
Modified Wed Jun 24 09:06:59 2009 UTC (9 years, 9 months ago) by lobry
new quality test with test file with trailling tabulations

Revision 1616 - Directory Listing
Modified Wed Jun 24 09:06:14 2009 UTC (9 years, 9 months ago) by lobry
new quality check with test file for non constant number of tabs

Revision 1604 - Directory Listing
Modified Sun Apr 26 11:51:35 2009 UTC (9 years, 11 months ago) by lobry
new check with Darren Obbard test file

Revision 1594 - Directory Listing
Modified Thu Apr 23 18:24:12 2009 UTC (9 years, 11 months ago) by lobry
doc polish after Darren Obbard post

Revision 1566 - Directory Listing
Modified Wed Mar 11 10:02:26 2009 UTC (10 years ago) by lobry
new utility functions

Revision 1562 - Directory Listing
Modified Mon Mar 9 18:48:03 2009 UTC (10 years ago) by lobry
peakabif now returns more info

Revision 1560 - Directory Listing
Modified Mon Feb 16 19:56:44 2009 UTC (10 years, 1 month ago) by lobry
doubling the double backslashes

Revision 1558 - Directory Listing
Modified Thu Feb 12 15:20:10 2009 UTC (10 years, 1 month ago) by lobry
new split argument

Revision 1554 - Directory Listing
Modified Thu Feb 12 12:06:44 2009 UTC (10 years, 1 month ago) by lobry
new utility function al2bp

Revision 1551 - Directory Listing
Modified Wed Feb 4 15:32:16 2009 UTC (10 years, 1 month ago) by lobry
now plotabif returns its local graphical parameter settings

Revision 1548 - Directory Listing
Modified Wed Feb 4 13:58:36 2009 UTC (10 years, 1 month ago) by lobry
New function to plot allelic ladder in ABIF data

Revision 1546 - Directory Listing
Modified Wed Feb 4 13:56:30 2009 UTC (10 years, 1 month ago) by lobry
Function to locate peaks in ABIF data

Revision 1544 - Directory Listing
Modified Wed Feb 4 13:54:23 2009 UTC (10 years, 1 month ago) by lobry
new plot function for ABIF data

Revision 1538 - Directory Listing
Modified Fri Jan 23 17:53:14 2009 UTC (10 years, 2 months ago) by lobry
new STR raw data

Revision 1537 - Directory Listing
Modified Fri Jan 23 17:51:32 2009 UTC (10 years, 2 months ago) by lobry
quality check

Revision 1536 - Directory Listing
Modified Fri Jan 23 08:56:39 2009 UTC (10 years, 2 months ago) by lobry
extra space deleted

Revision 1534 - Directory Listing
Modified Fri Jan 23 00:16:24 2009 UTC (10 years, 2 months ago) by lobry
new dataset identifiler

Revision 1531 - Directory Listing
Modified Thu Jan 22 19:02:45 2009 UTC (10 years, 2 months ago) by lobry
new dataset GS500LIZ

Revision 1529 - Directory Listing
Modified Wed Jan 21 09:24:23 2009 UTC (10 years, 2 months ago) by lobry
OK compil 2.8.1

Revision 1526 - Directory Listing
Modified Wed Jan 21 06:58:59 2009 UTC (10 years, 2 months ago) by lobry
keyword deleted

Revision 1525 - Directory Listing
Modified Wed Jan 21 06:56:43 2009 UTC (10 years, 2 months ago) by lobry
code was missing

Revision 1524 - Directory Listing
Modified Wed Jan 21 06:54:59 2009 UTC (10 years, 2 months ago) by lobry
enumerate was missing

Revision 1523 - Directory Listing
Modified Wed Jan 21 06:53:31 2009 UTC (10 years, 2 months ago) by lobry
enumerate was missing

Revision 1522 - Directory Listing
Modified Wed Jan 21 06:51:45 2009 UTC (10 years, 2 months ago) by lobry
enumerate was missing

Revision 1521 - Directory Listing
Modified Wed Jan 21 06:50:04 2009 UTC (10 years, 2 months ago) by lobry
enumerate was missing

Revision 1520 - Directory Listing
Modified Wed Jan 21 06:48:36 2009 UTC (10 years, 2 months ago) by lobry
enumerate was missing

Revision 1519 - Directory Listing
Modified Wed Jan 21 06:42:13 2009 UTC (10 years, 2 months ago) by lobry
enumerate was missing

Revision 1518 - Directory Listing
Modified Wed Jan 21 06:39:08 2009 UTC (10 years, 2 months ago) by lobry
wrongly placed curly brace fixed

Revision 1509 - Directory Listing
Modified Fri Dec 12 11:49:25 2008 UTC (10 years, 3 months ago) by lobry
deletion of the itemize in the argument section

Revision 1507 - Directory Listing
Modified Fri Dec 12 10:29:59 2008 UTC (10 years, 3 months ago) by lobry
change default for extended argument to avoid warnings

Revision 1505 - Directory Listing
Modified Mon Dec 8 19:03:25 2008 UTC (10 years, 3 months ago) by lobry
deleting empty details section

Revision 1502 - Directory Listing
Modified Mon Nov 3 10:37:58 2008 UTC (10 years, 4 months ago) by lobry
new function read.abif

Revision 1474 - Directory Listing
Modified Sun Oct 12 08:29:25 2008 UTC (10 years, 5 months ago) by lobry
print.qaw has its own Rd file now

Revision 1472 - Directory Listing
Modified Sat Oct 11 16:54:29 2008 UTC (10 years, 5 months ago) by lobry
class qaw has gained a generic print method

Revision 1458 - Directory Listing
Modified Thu Sep 11 09:31:37 2008 UTC (10 years, 6 months ago) by simonpenel
More description for dist.alignment.Rd

Revision 1447 - Directory Listing
Modified Fri Aug 1 08:38:07 2008 UTC (10 years, 7 months ago) by simonpenel


Revision 1444 - Directory Listing
Modified Tue Jul 29 15:56:28 2008 UTC (10 years, 7 months ago) by penel
Original Path: branches/seqinr_cran/pkg/man
renome seqinr en pkg

Revision 1441 - Directory Listing
Modified Mon Jul 28 10:44:05 2008 UTC (10 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
kurt request

Revision 1433 - Directory Listing
Modified Tue Jul 8 13:31:54 2008 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1432 - Directory Listing
Modified Sun Jun 29 14:42:09 2008 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1431 - Directory Listing
Modified Sun Jun 29 14:40:10 2008 UTC (10 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
more arguments

Revision 1429 - Directory Listing
Modified Sat Jun 7 17:14:19 2008 UTC (10 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
PAUP is commercial

Revision 1428 - Directory Listing
Modified Sat Jun 7 15:55:31 2008 UTC (10 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1426 - Directory Listing
Modified Sat Jun 7 09:48:25 2008 UTC (10 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
NEXUS link info

Revision 1425 - Directory Listing
Modified Fri Jun 6 14:41:46 2008 UTC (10 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1424 - Directory Listing
Modified Fri Jun 6 13:37:06 2008 UTC (10 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1421 - Directory Listing
Modified Thu Jun 5 17:00:33 2008 UTC (10 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1420 - Directory Listing
Modified Wed Jun 4 17:09:39 2008 UTC (10 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1407 - Directory Listing
Modified Mon May 12 15:05:47 2008 UTC (10 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
single dontrun

Revision 1401 - Directory Listing
Modified Mon May 12 13:11:02 2008 UTC (10 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
fix bug for R 2.8.0

Revision 1398 - Directory Listing
Modified Mon May 12 10:02:43 2008 UTC (10 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
file.choose

Revision 1397 - Directory Listing
Modified Mon May 12 09:45:53 2008 UTC (10 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
more info on file specification

Revision 1391 - Directory Listing
Modified Sat Mar 15 10:02:43 2008 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
modif suggestion CG

Revision 1381 - Directory Listing
Modified Sat Mar 1 10:24:24 2008 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
two new args and a sanity check

Revision 1380 - Directory Listing
Modified Sat Mar 1 10:23:41 2008 UTC (11 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
sanity check for reverse.align

Revision 1371 - Directory Listing
Modified Sun Feb 24 08:13:33 2008 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
use native encoding

Revision 1369 - Directory Listing
Modified Sat Feb 23 13:30:01 2008 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
add init

Revision 1368 - Directory Listing
Modified Sat Feb 23 13:28:21 2008 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
crossref

Revision 1367 - Directory Listing
Modified Sat Feb 23 13:10:06 2008 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
verbose argument

Revision 1365 - Directory Listing
Modified Sat Feb 16 12:48:06 2008 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
more arguments

Revision 1364 - Directory Listing
Modified Fri Feb 15 16:47:18 2008 UTC (11 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
new verbose argument

Revision 1361 - Directory Listing
Modified Thu Jan 17 10:49:31 2008 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
phase -> start

Revision 1360 - Directory Listing
Modified Thu Jan 17 09:11:48 2008 UTC (11 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
frame -> phase

Revision 1351 - Directory Listing
Modified Sun Dec 16 14:18:30 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
description was missing

Revision 1350 - Directory Listing
Modified Sun Dec 16 14:02:12 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
value was empty, local file for demo, sanity check

Revision 1347 - Directory Listing
Modified Sun Dec 16 13:20:32 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
details section deleted

Revision 1346 - Directory Listing
Modified Sun Dec 16 13:17:08 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
argument section deleted

Revision 1343 - Directory Listing
Modified Sat Dec 15 18:09:46 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
new argument source and references

Revision 1341 - Directory Listing
Modified Sat Dec 15 11:40:28 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
maxgensize in dia.bactgensize()

Revision 1326 - Directory Listing
Modified Sun Dec 2 16:33:59 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
initial addition

Revision 1325 - Directory Listing
Modified Sun Dec 2 16:33:06 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
removed

Revision 1324 - Directory Listing
Modified Sun Dec 2 16:31:49 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
parser.socket is now documented

Revision 1323 - Directory Listing
Modified Sun Dec 2 16:31:17 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
deprecated alias deleted

Revision 1322 - Directory Listing
Modified Sun Dec 2 16:28:35 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
deprecated getNumber.socket and getAttributsocket added

Revision 1311 - Directory Listing
Modified Sat Dec 1 18:39:16 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
new example

Revision 1310 - Directory Listing
Modified Thu Nov 29 09:24:49 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
typo correction

Revision 1309 - Directory Listing
Modified Tue Nov 27 13:51:21 2007 UTC (11 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1307 - Directory Listing
Modified Mon Nov 26 23:46:46 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
new generic/methods scheme

Revision 1306 - Directory Listing
Modified Mon Nov 26 00:11:38 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
readAnnots.socket -> getAnnot.Rd

Revision 1304 - Directory Listing
Modified Sun Nov 25 23:54:17 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
strip.desc

Revision 1303 - Directory Listing
Modified Sun Nov 25 23:23:38 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
getAnnot rewriting

Revision 1299 - Directory Listing
Modified Sun Nov 25 19:50:58 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
seqonly argument

Revision 1295 - Directory Listing
Modified Sun Nov 25 13:58:45 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
sanity check

Revision 1294 - Directory Listing
Modified Sat Nov 24 18:43:05 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
graph added

Revision 1290 - Directory Listing
Modified Sat Nov 24 12:17:24 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
biblio

Revision 1287 - Directory Listing
Modified Fri Nov 23 12:24:10 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
benchmark

Revision 1286 - Directory Listing
Modified Wed Nov 21 22:45:54 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
File -> file

Revision 1285 - Directory Listing
Modified Wed Nov 21 22:19:42 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
ref added

Revision 1281 - Directory Listing
Modified Wed Nov 21 21:13:30 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
comment lines in FASTA files now supported

Revision 1280 - Directory Listing
Modified Wed Nov 21 19:57:52 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
typo

Revision 1275 - Directory Listing
Modified Wed Nov 21 14:56:13 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
m16j dataset

Revision 1271 - Directory Listing
Modified Wed Nov 7 21:26:06 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
GCpos() and frame

Revision 1270 - Directory Listing
Modified Wed Nov 7 15:09:45 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
NA.GC

Revision 1264 - Directory Listing
Modified Wed Nov 7 12:19:54 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1252 - Directory Listing
Modified Thu Nov 1 08:20:17 2007 UTC (11 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
File -> file

Revision 1224 - Directory Listing
Modified Wed Oct 24 07:50:23 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1223 - Directory Listing
Modified Wed Oct 24 07:18:31 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
modlistname = listname

Revision 1222 - Directory Listing
Modified Wed Oct 24 07:17:32 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
modlistname = listname

Revision 1218 - Directory Listing
Modified Tue Oct 23 22:24:09 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
arguments

Revision 1217 - Directory Listing
Modified Tue Oct 23 22:12:28 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
quitacnuc()

Revision 1214 - Directory Listing
Modified Tue Oct 23 21:50:10 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
clientid

Revision 1213 - Directory Listing
Modified Tue Oct 23 21:49:23 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
clientid

Revision 1211 - Directory Listing
Modified Tue Oct 23 21:47:43 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
clientid

Revision 1210 - Directory Listing
Modified Tue Oct 23 21:30:48 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
tag

Revision 1207 - Directory Listing
Modified Tue Oct 23 21:21:52 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
unitary test

Revision 1206 - Directory Listing
Modified Tue Oct 23 20:45:54 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
))

Revision 1205 - Directory Listing
Modified Tue Oct 23 20:43:54 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
\_

Revision 1204 - Directory Listing
Modified Tue Oct 23 20:41:09 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1202 - Directory Listing
Modified Mon Oct 22 09:10:03 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
typo

Revision 1201 - Directory Listing
Modified Sun Oct 21 18:54:55 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
stopifnot()

Revision 1199 - Directory Listing
Modified Sun Oct 21 17:36:43 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
closebank()

Revision 1198 - Directory Listing
Modified Sun Oct 21 17:30:18 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
closebank()

Revision 1197 - Directory Listing
Modified Sun Oct 21 17:20:04 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
closebank()

Revision 1196 - Directory Listing
Modified Sun Oct 21 17:09:33 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
stopifnot()

Revision 1195 - Directory Listing
Modified Sun Oct 21 17:00:39 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
stopifnot()

Revision 1193 - Directory Listing
Modified Sun Oct 21 16:31:59 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
gls -> getliststate

Revision 1192 - Directory Listing
Modified Sun Oct 21 16:23:05 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
typo kbd -> kdb

Revision 1191 - Directory Listing
Modified Sun Oct 21 16:06:55 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
typo geType

Revision 1188 - Directory Listing
Modified Sun Oct 21 15:39:36 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
option to cat results

Revision 1185 - Directory Listing
Modified Sun Oct 21 10:02:00 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
Code factorization using function autosocket()

Revision 1184 - Directory Listing
Modified Sun Oct 21 09:08:59 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
typo

Revision 1181 - Directory Listing
Modified Sat Oct 20 22:11:27 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1179 - Directory Listing
Modified Sat Oct 20 21:17:55 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
utility

Revision 1178 - Directory Listing
Modified Sat Oct 20 17:51:21 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
typo

Revision 1176 - Directory Listing
Modified Sat Oct 20 17:16:48 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1175 - Directory Listing
Modified Sat Oct 20 16:47:08 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
update

Revision 1173 - Directory Listing
Modified Sat Oct 20 16:38:42 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1171 - Directory Listing
Modified Sat Oct 20 15:24:43 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1169 - Directory Listing
Modified Sat Oct 20 14:18:12 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1167 - Directory Listing
Modified Sat Oct 20 13:50:27 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1165 - Directory Listing
Modified Sat Oct 20 12:33:36 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
value section updated

Revision 1163 - Directory Listing
Modified Sat Oct 20 10:20:41 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1161 - Directory Listing
Modified Sat Oct 20 09:41:52 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1159 - Directory Listing
Modified Sat Oct 20 09:01:18 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1154 - Directory Listing
Modified Thu Oct 18 13:55:50 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1153 - Directory Listing
Modified Thu Oct 18 13:51:24 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
keyword changed

Revision 1151 - Directory Listing
Modified Thu Oct 18 12:56:57 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1147 - Directory Listing
Modified Thu Oct 18 08:10:58 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
use generic in example

Revision 1146 - Directory Listing
Modified Thu Oct 18 08:03:11 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
socket = auto

Revision 1126 - Directory Listing
Modified Sun Oct 7 10:12:36 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
DEV is now an allowed value tagbank parameter in choosebank()

Revision 1124 - Directory Listing
Modified Sat Oct 6 16:25:28 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
example code polish

Revision 1123 - Directory Listing
Modified Sat Oct 6 16:03:29 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
missing emph added

Revision 1122 - Directory Listing
Modified Sat Oct 6 15:48:31 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
+author

Revision 1120 - Directory Listing
Modified Sat Oct 6 13:31:13 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
modifs for the deletion of the socket slot in objects from class seqAcnucWeb

Revision 1119 - Directory Listing
Modified Sat Oct 6 13:27:34 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
using accession number for repro

Revision 1115 - Directory Listing
Modified Sat Oct 6 12:17:12 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
new method print for objects from class seqAcnucWeb

Revision 1106 - Directory Listing
Modified Mon Oct 1 19:23:36 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
NA propagation

Revision 1105 - Directory Listing
Modified Mon Oct 1 19:13:16 2007 UTC (11 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
sanity check and better description of returned value

Revision 1094 - Directory Listing
Modified Mon Sep 24 11:08:18 2007 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
removeTrailingSpaces is now deleted

Revision 1091 - Directory Listing
Modified Mon Sep 24 11:06:10 2007 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
new utility

Revision 1090 - Directory Listing
Modified Sun Sep 23 15:40:21 2007 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
utility function simon() moved to query() where it is used

Revision 1087 - Directory Listing
Modified Sun Sep 23 13:54:44 2007 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
do not confuse with gc()

Revision 1086 - Directory Listing
Modified Sun Sep 23 13:43:56 2007 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
examples changed

Revision 1084 - Directory Listing
Modified Sun Sep 23 13:17:46 2007 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
sanity check added

Revision 1081 - Directory Listing
Modified Sun Sep 23 12:32:31 2007 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
Sanity check in example added

Revision 1078 - Directory Listing
Modified Wed Sep 19 12:46:39 2007 UTC (11 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
accession number in example

Revision 1043 - Directory Listing
Modified Fri Jul 20 13:22:51 2007 UTC (11 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
F -> FALSE, summary-> method

Revision 1039 - Directory Listing
Modified Fri Jul 20 09:33:57 2007 UTC (11 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
Modif pour tenir compte des conseils de K Hornick.
On remplace summary.SeqFastaAA par {summary}{SeqFastaAA}

Revision 1034 - Directory Listing
Modified Sun Jul 15 17:48:02 2007 UTC (11 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
sanity check example added

Revision 1027 - Directory Listing
Modified Sat Jul 14 11:41:01 2007 UTC (11 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
partial matching and toupper

Revision 1024 - Directory Listing
Modified Mon Jul 9 14:46:18 2007 UTC (11 years, 8 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
zscore -base- avec formule exacte (Schbath)

Revision 1009 - Directory Listing
Modified Tue Jul 3 10:54:53 2007 UTC (11 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 1008 - Directory Listing
Modified Fri Jun 15 05:34:33 2007 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
unmatched right brace deleted

Revision 1007 - Directory Listing
Modified Fri Jun 15 05:28:13 2007 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
unmatched right brace deleted

Revision 1001 - Directory Listing
Modified Wed Jun 13 15:10:26 2007 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
encoding latin1 now declared

Revision 1000 - Directory Listing
Modified Wed Jun 13 15:09:08 2007 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
non ASCII character removed

Revision 999 - Directory Listing
Modified Wed Jun 13 15:00:00 2007 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
encoding latin1 now declared

Revision 998 - Directory Listing
Modified Wed Jun 13 14:55:48 2007 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
non ASCII character removed

Revision 997 - Directory Listing
Modified Wed Jun 13 14:16:54 2007 UTC (11 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
encoding latin1 now declared

Revision 992 - Directory Listing
Modified Sat Apr 21 16:44:20 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
oldGC argument and div/0 check

Revision 991 - Directory Listing
Modified Sat Apr 21 16:44:00 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
utility function

Revision 990 - Directory Listing
Modified Sat Apr 21 15:09:50 2007 UTC (11 years, 11 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
in prep -> 2006

Revision 985 - Directory Listing
Modified Wed Apr 18 14:55:18 2007 UTC (11 years, 11 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
Passe de FALSE a TRUE pour la variable "exact"

Revision 979 - Directory Listing
Modified Tue Apr 17 12:51:31 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
forceToLower argument added

Revision 977 - Directory Listing
Modified Tue Apr 17 11:31:57 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
extra space in } { deleted

Revision 976 - Directory Listing
Modified Tue Apr 17 11:27:54 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
alphabet argument added

Revision 974 - Directory Listing
Modified Tue Apr 17 09:07:07 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
Gabriel Valiente suggestion

Revision 966 - Directory Listing
Modified Sun Apr 15 08:48:37 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
ambiguous bases

Revision 965 - Directory Listing
Modified Sat Apr 14 16:25:26 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
function invers() deleted

Revision 964 - Directory Listing
Modified Sat Apr 14 16:00:19 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
handling ambiguous bases

Revision 963 - Directory Listing
Modified Sat Apr 14 15:46:48 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
handling ambiguous bases

Revision 962 - Directory Listing
Modified Sat Apr 14 15:42:47 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
handling ambiguous bases

Revision 961 - Directory Listing
Modified Sat Apr 14 15:40:16 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
handling ambiguous bases

Revision 960 - Directory Listing
Modified Sat Apr 14 11:10:08 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 959 - Directory Listing
Modified Fri Apr 13 16:58:32 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
ref to draw.oriloc in examples

Revision 958 - Directory Listing
Modified Fri Apr 13 16:57:57 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
more user options

Revision 956 - Directory Listing
Modified Fri Apr 13 13:32:23 2007 UTC (11 years, 11 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 951 - Directory Listing
Modified Thu Apr 12 21:07:35 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
dont run with emblTP example

Revision 949 - Directory Listing
Modified Thu Apr 12 09:23:41 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
NAstring argument

Revision 944 - Directory Listing
Modified Mon Apr 9 13:28:24 2007 UTC (11 years, 11 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
what's happen -> what happens

Revision 942 - Directory Listing
Modified Thu Mar 29 15:45:27 2007 UTC (11 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
forceToLower

Revision 940 - Directory Listing
Modified Wed Mar 28 16:00:27 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
seealso links to rearranged.oriloc added

Revision 939 - Directory Listing
Modified Wed Mar 28 15:27:56 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
codonW example added

Revision 937 - Directory Listing
Modified Wed Mar 28 10:12:13 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
ambiguous base case

Revision 936 - Directory Listing
Modified Wed Mar 28 09:50:57 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
codoc mismatch fix

Revision 935 - Directory Listing
Modified Tue Mar 27 16:21:11 2007 UTC (12 years ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
debut de doc

Revision 925 - Directory Listing
Modified Sun Mar 25 14:53:47 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
update ref MBE (2006) 23:2214-2219

Revision 924 - Directory Listing
Modified Sun Mar 25 14:33:15 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
+final line end

Revision 921 - Directory Listing
Modified Sun Mar 25 13:47:47 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
code polish

Revision 919 - Directory Listing
Modified Wed Mar 14 11:20:31 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
lower case explainded

Revision 914 - Directory Listing
Modified Sun Mar 11 14:03:55 2007 UTC (12 years ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
doc gbk2g2.euk

Revision 910 - Directory Listing
Modified Sat Mar 10 17:12:40 2007 UTC (12 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
deletion of an extra \n in the example section

Revision 909 - Directory Listing
Modified Sat Mar 10 15:49:03 2007 UTC (12 years ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
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Revision 907 - Directory Listing
Modified Sat Mar 10 14:52:06 2007 UTC (12 years ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
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Revision 906 - Directory Listing
Modified Sat Mar 10 14:52:05 2007 UTC (12 years ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
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Revision 905 - Directory Listing
Modified Sat Mar 10 14:47:25 2007 UTC (12 years ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
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Revision 904 - Directory Listing
Modified Sat Mar 10 14:44:55 2007 UTC (12 years ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
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Revision 903 - Directory Listing
Modified Sat Mar 10 14:42:56 2007 UTC (12 years ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
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Revision 902 - Directory Listing
Modified Sat Mar 10 14:18:36 2007 UTC (12 years ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
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Revision 892 - Directory Listing
Modified Mon Mar 5 15:03:02 2007 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
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Revision 891 - Directory Listing
Modified Mon Mar 5 13:43:43 2007 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
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Revision 878 - Directory Listing
Modified Fri Mar 2 18:14:51 2007 UTC (12 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
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Revision 859 - Directory Listing
Modified Mon Jan 8 17:35:24 2007 UTC (12 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
vectorization

Revision 855 - Directory Listing
Modified Fri Jan 5 16:53:19 2007 UTC (12 years, 2 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
Modif pour la vesrion compressee

Revision 851 - Directory Listing
Modified Wed Nov 22 16:39:31 2006 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
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Revision 850 - Directory Listing
Modified Tue Nov 21 09:44:38 2006 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
ajout de nzlines

Revision 847 - Directory Listing
Modified Mon Nov 20 16:43:12 2006 UTC (12 years, 4 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 834 - Directory Listing
Modified Fri Nov 17 10:51:57 2006 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
glimmer3

Revision 830 - Directory Listing
Modified Sun Oct 29 11:28:55 2006 UTC (12 years, 4 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
as.string default

Revision 826 - Directory Listing
Modified Thu Oct 19 14:02:21 2006 UTC (12 years, 5 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
modif examples{}

Revision 825 - Directory Listing
Modified Thu Oct 19 12:23:31 2006 UTC (12 years, 5 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 822 - Directory Listing
Modified Tue Oct 17 16:58:11 2006 UTC (12 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
glr

Revision 821 - Directory Listing
Modified Tue Oct 17 10:14:01 2006 UTC (12 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 820 - Directory Listing
Modified Tue Oct 17 09:53:54 2006 UTC (12 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
clfcd

Revision 819 - Directory Listing
Modified Tue Oct 17 09:06:51 2006 UTC (12 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
internationalization

Revision 817 - Directory Listing
Modified Sun Oct 15 16:28:37 2006 UTC (12 years, 5 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
clfcd()

Revision 810 - Directory Listing
Modified Sun Sep 10 10:40:27 2006 UTC (12 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
hide fromchar and tochar

Revision 809 - Directory Listing
Modified Sun Sep 10 10:14:09 2006 UTC (12 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
stresc

Revision 808 - Directory Listing
Modified Sun Sep 10 10:11:29 2006 UTC (12 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
doc for sname.add

Revision 806 - Directory Listing
Modified Sun Sep 10 09:28:22 2006 UTC (12 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
sname option

Revision 803 - Directory Listing
Modified Fri Sep 8 20:18:20 2006 UTC (12 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
readsmj as a single file is better

Revision 802 - Directory Listing
Modified Fri Sep 8 10:16:53 2006 UTC (12 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
new function readfirstrec()

Revision 801 - Directory Listing
Modified Fri Sep 8 09:02:08 2006 UTC (12 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
getType(socket = auto)

Revision 800 - Directory Listing
Modified Fri Sep 8 08:02:23 2006 UTC (12 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
File -> file in read.alignment()

Revision 796 - Directory Listing
Modified Mon Sep 4 12:18:16 2006 UTC (12 years, 6 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
ptit problem dans le latex....

Revision 776 - Directory Listing
Modified Mon Aug 28 22:32:47 2006 UTC (12 years, 6 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
remove extra whites

Revision 764 - Directory Listing
Modified Sat Aug 26 10:53:41 2006 UTC (12 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
more typo options in LaTeX tables

Revision 763 - Directory Listing
Modified Fri Aug 25 20:43:48 2006 UTC (12 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
char ctrl size

Revision 754 - Directory Listing
Modified Wed Aug 23 15:42:02 2006 UTC (12 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
improved consistancy between a() and aaa()

Revision 753 - Directory Listing
Modified Wed Aug 23 14:36:32 2006 UTC (12 years, 7 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
the amino-acid index database

Revision 747 - Directory Listing
Modified Sun Jul 23 10:07:48 2006 UTC (12 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
dia=F

Revision 745 - Directory Listing
Modified Sun Jul 23 09:51:42 2006 UTC (12 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
pink4

Revision 739 - Directory Listing
Modified Tue Jul 18 07:55:51 2006 UTC (12 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 737 - Directory Listing
Modified Sun Jul 9 13:28:47 2006 UTC (12 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
dotPlot

Revision 735 - Directory Listing
Modified Thu Jul 6 13:55:40 2006 UTC (12 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
nbl =10000

Revision 731 - Directory Listing
Modified Mon Jul 3 13:48:47 2006 UTC (12 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
crelistfromclientdata

Revision 730 - Directory Listing
Modified Mon Jul 3 13:43:28 2006 UTC (12 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
options F and FK ammended

Revision 728 - Directory Listing
Modified Sun Jul 2 13:55:50 2006 UTC (12 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
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Revision 725 - Directory Listing
Modified Mon Jun 19 19:08:28 2006 UTC (12 years, 9 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
pas histogram!

Revision 722 - Directory Listing
Modified Fri May 19 07:58:38 2006 UTC (12 years, 10 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
dontrun

Revision 718 - Directory Listing
Modified Wed May 17 16:04:33 2006 UTC (12 years, 10 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
reverse.align

Revision 715 - Directory Listing
Modified Tue May 16 08:43:10 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
read/write consistency check in examples

Revision 714 - Directory Listing
Modified Tue May 16 07:53:37 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
no describe in value

Revision 713 - Directory Listing
Modified Mon May 15 16:39:09 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
I have removed two gremlin chars

Revision 712 - Directory Listing
Modified Mon May 15 16:11:57 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
Example from Guy Perriere

Revision 702 - Directory Listing
Modified Sat May 13 06:32:50 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
NA.rscu argument

Revision 698 - Directory Listing
Modified Fri May 12 18:42:19 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
link to write.fasta

Revision 696 - Directory Listing
Modified Fri May 12 12:38:56 2006 UTC (12 years, 10 months ago) by necsulea
Original Path: branches/seqinr_cran/seqinr/man
doc write.fasta

Revision 695 - Directory Listing
Modified Fri May 12 09:28:37 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
more arguments

Revision 693 - Directory Listing
Modified Tue May 2 14:05:59 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
test heure

Revision 691 - Directory Listing
Modified Mon May 1 16:38:39 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
examples more explicit

Revision 688 - Directory Listing
Modified Mon May 1 15:53:48 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
more examples (fasta, clustal)

Revision 686 - Directory Listing
Modified Mon May 1 12:00:50 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
doc polishing

Revision 685 - Directory Listing
Modified Mon May 1 10:38:41 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
transsplicing example

Revision 683 - Directory Listing
Modified Mon May 1 09:18:29 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
add Leo's toy example and some links

Revision 682 - Directory Listing
Modified Mon May 1 09:03:56 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
add Leo's toy example and some links

Revision 681 - Directory Listing
Modified Fri Apr 28 09:21:16 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
typo

Revision 680 - Directory Listing
Modified Fri Apr 28 09:14:34 2006 UTC (12 years, 10 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
test acgt

Revision 678 - Directory Listing
Modified Thu Apr 27 07:28:15 2006 UTC (12 years, 11 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
upper case option

Revision 676 - Directory Listing
Modified Mon Apr 3 07:55:30 2006 UTC (12 years, 11 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Fusion de tous les getTrucs.Rd associes aux sequences dans GetFromSequence.Rd

Revision 675 - Directory Listing
Modified Fri Mar 31 14:43:23 2006 UTC (12 years, 11 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Nettoyage et simplification du package overview

Revision 673 - Directory Listing
Modified Fri Mar 31 11:56:00 2006 UTC (12 years, 11 months ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Package overview man page

Revision 670 - Directory Listing
Modified Mon Mar 27 12:42:29 2006 UTC (13 years ago) by penel
Original Path: branches/seqinr_cran/seqinr/man

Modif des petites coquilles qui font planter avec la version devel R-2.3

Revision 662 - Directory Listing
Modified Wed Mar 22 16:08:07 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Don�s UV (Prochlorococcus marinus)

Revision 661 - Directory Listing
Modified Wed Mar 22 16:07:38 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Donn� UV (vue syst�tique)

Revision 659 - Directory Listing
Modified Mon Mar 13 16:57:59 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Rajout de d�ils sur les mod�s impl�nt�

Revision 658 - Directory Listing
Modified Mon Mar 13 09:33:38 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
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Revision 657 - Directory Listing
Modified Fri Mar 10 15:33:59 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Rectification des exemples : identical(all.equal(...), TRUE)

Revision 656 - Directory Listing
Modified Fri Mar 10 13:43:51 2006 UTC (13 years ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
as.string en plus

Revision 655 - Directory Listing
Modified Thu Mar 9 16:01:32 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 654 - Directory Listing
Modified Thu Mar 9 15:58:45 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Fusion des documentations des fonctions "rho" et "zscore" dans zscore.Rd

Revision 652 - Directory Listing
Modified Wed Mar 8 15:05:20 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Rajout d'une fonction GC1, modif de la doc correspondante

Revision 651 - Directory Listing
Modified Wed Mar 8 11:04:23 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Calcul des zscores d�v�du rho de Karlin

Revision 650 - Directory Listing
Modified Wed Mar 8 11:03:35 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Calcul du rho de Karlin

Revision 648 - Directory Listing
Modified Fri Mar 3 16:37:19 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Mise �our de la documentation pour l'argument 'numcode'

Revision 646 - Directory Listing
Modified Thu Mar 2 13:57:57 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Rajout de l'option 'freq' pour les fr�ences de mots

Revision 644 - Directory Listing
Modified Thu Mar 2 12:33:10 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Modification mineure pour meilleure compr�nsion

Revision 643 - Directory Listing
Modified Wed Mar 1 12:08:25 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Fusion de GC.Rd, GC2.Rd et GC3.Rd

Revision 642 - Directory Listing
Modified Wed Mar 1 12:07:52 2006 UTC (13 years ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Elimin�pour une fusion dans GC.Rd

Revision 639 - Directory Listing
Modified Wed Feb 15 17:47:08 2006 UTC (13 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
version eureka

Revision 630 - Directory Listing
Modified Tue Feb 14 13:44:10 2006 UTC (13 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
more infos in notes

Revision 620 - Directory Listing
Modified Sun Feb 12 10:02:45 2006 UTC (13 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
debug

Revision 618 - Directory Listing
Modified Sat Feb 11 10:07:51 2006 UTC (13 years, 1 month ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 615 - Directory Listing
Modified Wed Feb 8 10:10:19 2006 UTC (13 years, 1 month ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Rectification des erreurs de syntaxe de l'exemple

Revision 613 - Directory Listing
Modified Tue Feb 7 17:28:26 2006 UTC (13 years, 1 month ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
Fonction de permutation d'une s�ence selon diff�nts mod�s

Revision 611 - Directory Listing
Modified Thu Feb 2 21:53:34 2006 UTC (13 years, 1 month ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
splitting .Rd file into single files per function

Revision 610 - Directory Listing
Modified Tue Jan 31 09:56:25 2006 UTC (13 years, 1 month ago) by palmeira
Original Path: branches/seqinr_cran/seqinr/man
fichier .Rd d�ac�

Revision 606 - Directory Listing
Modified Fri Dec 30 14:48:36 2005 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
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Revision 605 - Directory Listing
Modified Fri Dec 30 14:29:19 2005 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
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Revision 604 - Directory Listing
Modified Fri Dec 30 10:46:53 2005 UTC (13 years, 2 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
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Revision 595 - Directory Listing
Modified Fri Dec 23 11:19:44 2005 UTC (13 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
polish

Revision 587 - Directory Listing
Modified Thu Dec 22 11:53:30 2005 UTC (13 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 586 - Directory Listing
Modified Thu Dec 22 09:59:32 2005 UTC (13 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 578 - Directory Listing
Modified Thu Dec 15 14:41:56 2005 UTC (13 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
latexfile

Revision 576 - Directory Listing
Modified Tue Dec 6 13:55:30 2005 UTC (13 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
refs biblio

Revision 574 - Directory Listing
Modified Tue Dec 6 12:47:02 2005 UTC (13 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
un peu plus d'exemples

Revision 571 - Directory Listing
Modified Tue Dec 6 10:47:52 2005 UTC (13 years, 3 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
Modifs majeures de la doc de uco

Revision 550 - Directory Listing
Modified Mon Jul 25 13:28:34 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
Suppression de ) en trop pour usage choosebank

Revision 541 - Directory Listing
Modified Thu Jul 21 23:16:29 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
ajout de closebank()

Revision 540 - Directory Listing
Modified Thu Jul 21 21:20:20 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
choosebank(bonnebanque) retourne un resultat invisible

Revision 539 - Directory Listing
Modified Thu Jul 21 20:50:17 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
MAJEUR: changement de l'ordre des parametres de query()

Revision 538 - Directory Listing
Modified Thu Jul 21 20:35:03 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
le parametre invisible de query est maintenant TRUE par defaut

Revision 537 - Directory Listing
Modified Thu Jul 21 19:11:43 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
option tagbank dans choosebank

Revision 532 - Directory Listing
Modified Thu Jul 21 13:17:50 2005 UTC (13 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 528 - Directory Listing
Modified Thu Jul 21 09:09:08 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
argument virtual

Revision 515 - Directory Listing
Modified Tue Jul 19 14:12:20 2005 UTC (13 years, 8 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
Modif de la doc pour prendre en compre les modfis des classes SeqAcnuccWeb et de query pour recupere le nom, la longueur,
 la frame et le code genetique associes a une sequence.

Revision 510 - Directory Listing
Modified Mon Jul 18 20:40:38 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
Ajout du verbose de query

Revision 506 - Directory Listing
Modified Mon Jul 18 14:29:17 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
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Revision 498 - Directory Listing
Modified Sun Jul 17 19:56:57 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
modifs mineures

Revision 497 - Directory Listing
Modified Sat Jul 16 15:26:14 2005 UTC (13 years, 8 months ago) by lobry
Original Path: branches/seqinr_cran/seqinr/man
*** empty log message ***

Revision 494 - Directory Listing
Modified Tue May 10 09:12:58 2005 UTC (13 years, 10 months ago) by penel
Original Path: branches/seqinr_cran/seqinr/man
Suppresion d'une parenthese surnumeraire pour que ca marche avec R-2.2.0

Revision 486 - Directory Listing
Modified Tue Feb 15 12:54:36 2005 UTC (14 years, 1 month ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
	I fixed the bug relating to a bug in R with par(omd).

Revision 477 - Directory Listing
Modified Wed Nov 3 14:46:00 2004 UTC (14 years, 4 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
AAstat.Rd

Revision 475 - Directory Listing
Modified Tue Oct 19 12:41:13 2004 UTC (14 years, 5 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
oriloc.Rd

Revision 470 - Directory Listing
Modified Fri Oct 1 08:23:51 2004 UTC (14 years, 5 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
AAstat.Rd

Revision 467 - Directory Listing
Modified Fri Sep 24 13:48:04 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
choosebank.Rd

Revision 463 - Directory Listing
Modified Wed Sep 22 13:45:02 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
EXP.Rd

Revision 461 - Directory Listing
Modified Tue Sep 21 14:54:04 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
aaa.Rd

Revision 458 - Directory Listing
Modified Tue Sep 21 09:12:00 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
query.Rd

Revision 457 - Directory Listing
Modified Tue Sep 21 08:18:37 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
choosebank.Rd

Revision 456 - Directory Listing
Modified Tue Sep 21 08:18:17 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
	blabla

Revision 455 - Directory Listing
Modified Thu Sep 16 13:08:02 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
getAnnot.Rd

Revision 453 - Directory Listing
Modified Thu Sep 16 12:57:24 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
kaks.Rd

Revision 452 - Directory Listing
Modified Wed Sep 15 14:14:18 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
AAstat.Rd

Revision 445 - Directory Listing
Modified Tue Sep 14 11:33:56 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
getType.Rd

Revision 444 - Directory Listing
Modified Tue Sep 14 11:33:18 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
query.Rd

Revision 442 - Directory Listing
Modified Mon Sep 13 08:01:24 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
dist.alignment.Rd

Revision 435 - Directory Listing
Modified Tue Sep 7 08:55:02 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
choosebank.Rd

Revision 428 - Directory Listing
Modified Fri Sep 3 12:07:40 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
getLocation.Rd

Revision 427 - Directory Listing
Modified Fri Sep 3 12:06:22 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
getSequence.Rd

Revision 426 - Directory Listing
Modified Fri Sep 3 12:04:51 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
plot.SeqAcnucWeb.Rd

Revision 419 - Directory Listing
Modified Fri Sep 3 08:36:49 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
choosebank.socket.Rd

Revision 418 - Directory Listing
Modified Fri Sep 3 08:36:27 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
choosebank.Rd

Revision 417 - Directory Listing
Modified Fri Sep 3 08:34:46 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
query.socket.Rd

Revision 416 - Directory Listing
Modified Fri Sep 3 08:31:32 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
mkbank.Rd

Revision 415 - Directory Listing
Modified Fri Sep 3 08:31:02 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
version cran

Revision 413 - Directory Listing
Modified Fri Sep 3 08:08:10 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
version cran

Revision 412 - Directory Listing
Modified Fri Sep 3 08:02:16 2004 UTC (14 years, 6 months ago) by charif
Original Path: branches/seqinr_cran/seqinr/man
version cran

Revision 409 - Directory Listing
Modified Wed Sep 1 12:24:48 2004 UTC (14 years, 6 months ago) by
Original Path: branches/seqinr_cran/seqinr/man
This commit was manufactured by cvs2svn to create branch 'seqinr_cran'.

Revision 408 - Directory Listing
Modified Wed Sep 1 12:24:47 2004 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr/man
get.db.growth.Rd

Revision 404 - Directory Listing
Modified Tue Aug 31 13:57:57 2004 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr/man
a.Rd

Revision 399 - Directory Listing
Modified Mon Aug 30 07:32:25 2004 UTC (14 years, 6 months ago) by charif
Original Path: trunk/seqinr/man
	removed

Revision 398 - Directory Listing
Modified Fri Aug 27 08:07:06 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 396 - Directory Listing
Modified Mon Aug 23 11:17:47 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
getLocation.Rd

Revision 395 - Directory Listing
Modified Mon Aug 23 09:23:45 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
	see getTrans.Rd

Revision 394 - Directory Listing
Modified Mon Aug 23 09:22:43 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
getTrans replace Translate

Revision 393 - Directory Listing
Modified Mon Aug 23 08:23:43 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
getKeyword.Rd

Revision 392 - Directory Listing
Modified Mon Aug 23 08:21:35 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
getKeyword.Rd

Revision 390 - Directory Listing
Modified Thu Aug 19 14:06:50 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
kaks.Rd

Revision 389 - Directory Listing
Modified Thu Aug 19 09:56:15 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
uco.Rd

Revision 388 - Directory Listing
Modified Thu Aug 19 09:50:50 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
	see uco.R

Revision 385 - Directory Listing
Modified Thu Aug 5 13:55:55 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
kaks.Rd

Revision 381 - Directory Listing
Modified Thu Aug 5 13:51:59 2004 UTC (14 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
EXP.Rd

Revision 377 - Directory Listing
Modified Fri Jul 23 12:57:16 2004 UTC (14 years, 8 months ago) by charif
Original Path: trunk/seqinr/man
	add pk values

Revision 376 - Directory Listing
Modified Fri Jul 23 12:56:25 2004 UTC (14 years, 8 months ago) by charif
Original Path: trunk/seqinr/man
new function to estimate the pi

Revision 373 - Directory Listing
Modified Tue May 18 13:29:34 2004 UTC (14 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
GC2.Rd

Revision 371 - Directory Listing
Modified Tue May 18 08:55:53 2004 UTC (14 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
choosebank.socket.Rd

Revision 370 - Directory Listing
Modified Tue May 18 06:44:01 2004 UTC (14 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
GC3.Rd

Revision 369 - Directory Listing
Modified Tue May 18 06:43:41 2004 UTC (14 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
GC2.Rd

Revision 364 - Directory Listing
Modified Mon May 3 08:35:31 2004 UTC (14 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
getExon.Rd

Revision 359 - Directory Listing
Modified Fri Apr 2 07:19:38 2004 UTC (14 years, 11 months ago) by charif
Original Path: trunk/seqinr/man
read.alignment.Rd

Revision 358 - Directory Listing
Modified Fri Apr 2 07:11:57 2004 UTC (14 years, 11 months ago) by charif
Original Path: trunk/seqinr/man
dist.mase.Rd

Revision 357 - Directory Listing
Modified Fri Apr 2 07:11:33 2004 UTC (14 years, 11 months ago) by charif
Original Path: trunk/seqinr/man
read.mase.Rd

Revision 356 - Directory Listing
Modified Fri Apr 2 07:11:13 2004 UTC (14 years, 11 months ago) by charif
Original Path: trunk/seqinr/man
read.alignment.Rd

Revision 355 - Directory Listing
Modified Fri Apr 2 07:10:54 2004 UTC (14 years, 11 months ago) by charif
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 344 - Directory Listing
Modified Mon Feb 23 15:32:18 2004 UTC (15 years, 1 month ago) by charif
Original Path: trunk/seqinr/man
dist.mase.Rd

Revision 342 - Directory Listing
Modified Tue Jan 27 08:42:55 2004 UTC (15 years, 2 months ago) by charif
Original Path: trunk/seqinr/man
dist.mase.Rd

Revision 340 - Directory Listing
Modified Mon Jan 26 15:50:44 2004 UTC (15 years, 2 months ago) by charif
Original Path: trunk/seqinr/man
read.mase.Rd

Revision 338 - Directory Listing
Modified Tue Jan 20 20:48:03 2004 UTC (15 years, 2 months ago) by lobry
Original Path: trunk/seqinr/man
I have changed a link to codes (obsolete) to a link to unclass in the
see also section.

Revision 337 - Directory Listing
Modified Tue Jan 20 16:24:17 2004 UTC (15 years, 2 months ago) by charif
Original Path: trunk/seqinr/man
SeqAcnucWeb

Revision 334 - Directory Listing
Modified Wed Nov 26 21:59:38 2003 UTC (15 years, 4 months ago) by lobry
Original Path: trunk/seqinr/man
Translate.Rd

Revision 333 - Directory Listing
Modified Wed Nov 26 21:52:39 2003 UTC (15 years, 4 months ago) by lobry
Original Path: trunk/seqinr/man
translate.Rd

Revision 332 - Directory Listing
Modified Sat Nov 22 11:09:19 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
SeqFastaAA.Rd

Revision 330 - Directory Listing
Modified Sat Nov 22 11:05:33 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
SeqFrag.Rd

Revision 327 - Directory Listing
Modified Fri Nov 21 10:23:38 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
closebank.socket.Rd

Revision 326 - Directory Listing
Modified Fri Nov 21 10:22:09 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
closebank.socket.Rd

Revision 325 - Directory Listing
Modified Fri Nov 21 10:04:55 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
read.fasta.Rd

Revision 323 - Directory Listing
Modified Fri Nov 21 09:59:17 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
uco.Rd

Revision 320 - Directory Listing
Modified Fri Nov 21 07:13:15 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
	new Rd file

Revision 318 - Directory Listing
Modified Thu Nov 20 14:17:18 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
translate.R

Revision 317 - Directory Listing
Modified Thu Nov 20 13:59:21 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
 dontrun car pb pour compile SEQINR.UTIL peut �e pas dans bon env

Revision 316 - Directory Listing
Modified Thu Nov 20 13:18:46 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
SeqFastadna.Rd

Revision 315 - Directory Listing
Modified Thu Nov 20 12:50:12 2003 UTC (15 years, 4 months ago) by lobry
Original Path: trunk/seqinr/man
url changed

Revision 312 - Directory Listing
Modified Thu Nov 20 12:13:22 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
splitseq.Rd

Revision 311 - Directory Listing
Modified Thu Nov 20 12:11:28 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
invers.Rd

Revision 310 - Directory Listing
Modified Thu Nov 20 12:09:45 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
count.Rd

Revision 308 - Directory Listing
Modified Thu Nov 20 12:06:54 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
comp.Rd

Revision 303 - Directory Listing
Modified Thu Nov 20 09:27:56 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
mkbank.Rd

Revision 302 - Directory Listing
Modified Thu Nov 20 09:17:06 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
SeqAcnucLocal.Rd

Revision 301 - Directory Listing
Modified Thu Nov 20 09:16:45 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 300 - Directory Listing
Modified Thu Nov 20 09:08:41 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
query.socket.Rd

Revision 299 - Directory Listing
Modified Wed Nov 19 14:37:32 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
choosebank.Rd

Revision 298 - Directory Listing
Modified Wed Nov 19 14:34:34 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
read.fasta.Rd

Revision 296 - Directory Listing
Modified Wed Nov 19 14:19:40 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 294 - Directory Listing
Modified Wed Nov 19 13:56:49 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
choosebank.socket.Rd

Revision 293 - Directory Listing
Modified Wed Nov 19 13:46:17 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
Translate.Rd

Revision 292 - Directory Listing
Modified Wed Nov 19 13:39:44 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
query.socket.Rd

Revision 288 - Directory Listing
Modified Wed Nov 19 13:23:06 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
../R/ClassSeq.R

Revision 287 - Directory Listing
Modified Wed Nov 19 13:13:11 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
SeqFastadna.Rd

Revision 284 - Directory Listing
Modified Wed Nov 19 12:28:08 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
skew.Rd

Revision 283 - Directory Listing
Modified Wed Nov 19 12:26:53 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
translate.Rd

Revision 281 - Directory Listing
Modified Wed Nov 19 10:37:54 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
SeqAcnucLocal.Rd

Revision 279 - Directory Listing
Modified Tue Nov 18 15:47:29 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
choosebank.socket.Rd

Revision 278 - Directory Listing
Modified Tue Nov 18 15:43:32 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
getKeyword.Rd

Revision 273 - Directory Listing
Modified Mon Nov 17 15:36:49 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
read.fasta.Rd

Revision 267 - Directory Listing
Modified Mon Nov 17 14:45:18 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
Translate.Rd

Revision 263 - Directory Listing
Modified Mon Nov 17 10:35:09 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
read.fasta.Rd

Revision 259 - Directory Listing
Modified Mon Nov 17 09:12:16 2003 UTC (15 years, 4 months ago) by lobry
Original Path: trunk/seqinr/man
get.ncbi.Rd

Revision 256 - Directory Listing
Modified Thu Nov 13 09:15:00 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
SeqAcnucWeb.Rd

Revision 255 - Directory Listing
Modified Thu Nov 13 09:06:42 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
SeqFastAA.Rd

Revision 252 - Directory Listing
Modified Mon Nov 10 15:19:06 2003 UTC (15 years, 4 months ago) by charif
Original Path: trunk/seqinr/man
count.Rd

Revision 242 - Directory Listing
Modified Fri Oct 31 16:15:42 2003 UTC (15 years, 4 months ago) by lobry
Original Path: trunk/seqinr/man
Added the rot argument in doc

Revision 237 - Directory Listing
Modified Mon Oct 27 15:40:09 2003 UTC (15 years, 5 months ago) by charif
Original Path: trunk/seqinr/man
uco.Rd

Revision 230 - Directory Listing
Modified Mon Oct 20 10:58:49 2003 UTC (15 years, 5 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 228 - Directory Listing
Modified Mon Oct 20 10:52:09 2003 UTC (15 years, 5 months ago) by lobry
Original Path: trunk/seqinr/man
codoc fix

Revision 224 - Directory Listing
Modified Mon Oct 13 21:12:35 2003 UTC (15 years, 5 months ago) by lobry
Original Path: trunk/seqinr/man
I have updated the doc

Revision 221 - Directory Listing
Modified Mon Oct 13 11:48:20 2003 UTC (15 years, 5 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 217 - Directory Listing
Modified Wed Oct 8 09:26:35 2003 UTC (15 years, 5 months ago) by lobry
Original Path: trunk/seqinr/man
dia.bactgensize.Rd

Revision 208 - Directory Listing
Modified Thu Sep 4 15:35:51 2003 UTC (15 years, 6 months ago) by charif
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 207 - Directory Listing
Modified Thu Sep 4 15:23:33 2003 UTC (15 years, 6 months ago) by charif
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 199 - Directory Listing
Modified Fri Aug 1 09:14:12 2003 UTC (15 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 198 - Directory Listing
Modified Fri Aug 1 09:12:22 2003 UTC (15 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
	ss

Revision 197 - Directory Listing
Modified Fri Aug 1 09:11:38 2003 UTC (15 years, 7 months ago) by charif
Original Path: trunk/seqinr/man
	I created this new dataset documentation

Revision 157 - Directory Listing
Modified Tue Jun 24 19:55:56 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
Changed Keyword to a strandard one

Revision 151 - Directory Listing
Modified Sun Jun 22 10:46:55 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
changed T to TRUE so that running example is OK

Revision 150 - Directory Listing
Modified Sun Jun 22 10:34:55 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
I have added a cleanup at the end of the example so that only the
chargaff dataset remains in the user workspace after running the
example(chargaff)

Revision 149 - Directory Listing
Modified Sat Jun 21 15:15:54 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 148 - Directory Listing
Modified Wed Jun 18 22:15:43 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 146 - Directory Listing
Modified Tue Jun 17 13:41:56 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 144 - Directory Listing
Modified Sat Jun 14 09:05:25 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
I have fixed a codoc mismatch for the name of the second argument
of function uco()

Revision 141 - Directory Listing
Modified Fri Jun 13 13:15:00 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
dotchart.uco.Rd

Revision 135 - Directory Listing
Modified Sat Jun 7 12:29:52 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
The example was wrong (c2s instead of s2c!), this is fixed now.

Revision 131 - Directory Listing
Modified Thu Jun 5 13:32:44 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 129 - Directory Listing
Modified Thu Jun 5 12:02:44 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 128 - Directory Listing
Modified Wed Jun 4 15:34:31 2003 UTC (15 years, 9 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 120 - Directory Listing
Modified Sat May 24 15:12:20 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
Few typos fixed

Revision 119 - Directory Listing
Modified Sat May 24 15:06:33 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 118 - Directory Listing
Modified Fri May 23 22:52:53 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 117 - Directory Listing
Modified Fri May 23 20:56:50 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
more references

Revision 116 - Directory Listing
Modified Fri May 23 16:35:24 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 113 - Directory Listing
Modified Fri May 23 13:57:53 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 112 - Directory Listing
Modified Thu May 22 20:05:27 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
I have just fixed few typos and added a reference to the IUPAC.

Revision 111 - Directory Listing
Modified Thu May 22 19:32:03 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 106 - Directory Listing
Modified Thu May 22 13:15:31 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
	i added parenthesis

Revision 105 - Directory Listing
Modified Thu May 22 12:58:26 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
	I repared error I had introduiced
i repared error i introduiced

Revision 88 - Directory Listing
Modified Sun May 18 14:48:23 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 85 - Directory Listing
Modified Sat May 17 13:17:26 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
Documentation of the base4 argument and more examples added.

Revision 83 - Directory Listing
Modified Fri May 16 11:54:01 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
I have added a link to n2s()

Revision 82 - Directory Listing
Modified Fri May 16 11:28:28 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 80 - Directory Listing
Modified Thu May 15 21:14:15 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
First release of the doc.

Revision 78 - Directory Listing
Modified Thu May 15 16:32:29 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
	I corrected some failures

Revision 77 - Directory Listing
Modified Thu May 15 16:31:14 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 76 - Directory Listing
Modified Thu May 15 15:52:20 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
	doc for the function translate.R

Revision 75 - Directory Listing
Modified Thu May 15 15:48:03 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
	doc for the function uco.R

Revision 74 - Directory Listing
Modified Thu May 15 15:47:00 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
	doc for the function splitseq.R

Revision 73 - Directory Listing
Modified Thu May 15 15:46:14 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
	doc for the function count.R

Revision 72 - Directory Listing
Modified Thu May 15 15:45:22 2003 UTC (15 years, 10 months ago) by charif
Original Path: trunk/seqinr/man
	 doc for the function comp.R

Revision 66 - Directory Listing
Modified Tue May 13 20:37:25 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
I have changed the example to fix a typo in the y-axis label and to
put species name in italic font in the main title.

Revision 55 - Directory Listing
Modified Thu May 1 20:08:58 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
First doc for oriloc

Revision 48 - Directory Listing
Modified Wed Apr 30 23:09:23 2003 UTC (15 years, 10 months ago) by lobry
Original Path: trunk/seqinr/man
lseqinr.Rd

Revision 40 - Directory Listing
Modified Sun Apr 27 14:52:05 2003 UTC (15 years, 11 months ago) by lobry
Original Path: trunk/seqinr/man
doc for arguments Moore and ... added

Revision 37 - Directory Listing
Modified Sun Apr 27 13:23:17 2003 UTC (15 years, 11 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 35 - Directory Listing
Modified Sun Apr 27 12:45:29 2003 UTC (15 years, 11 months ago) by lobry
Original Path: trunk/seqinr/man
the argument get.db.growth.out is now documented

Revision 33 - Directory Listing
Modified Sun Apr 27 08:48:37 2003 UTC (15 years, 11 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 31 - Directory Listing
Modified Sat Apr 26 15:27:56 2003 UTC (15 years, 11 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 30 - Directory Listing
Modified Sat Apr 26 14:30:02 2003 UTC (15 years, 11 months ago) by lobry
Original Path: trunk/seqinr/man
keywords changed

Revision 29 - Directory Listing
Modified Sat Apr 26 09:58:33 2003 UTC (15 years, 11 months ago) by lobry
Original Path: trunk/seqinr/man
*** empty log message ***

Revision 10 - Directory Listing
Added Wed Apr 23 08:08:21 2003 UTC (15 years, 11 months ago) by ade2001
Original Path: trunk/seqinr/man
This commit was generated by cvs2svn to compensate for changes in r3,
which included commits to RCS files with non-trunk default branches.

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