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[dismo] Annotation of /pkg/dismo/ChangeLog
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Annotation of /pkg/dismo/ChangeLog

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Revision 591 - (view) (download)

1 : rhijmans 591 --- Current version
2 :     Several minor bug fixes
3 :     New null model RectHull
4 :    
5 : rhijmans 564 --- 14-March-2015, version 1.0-13
6 : rhijmans 560 Updated gbif function to work with new GBIF web service
7 :    
8 : rhijmans 515 --- 8-July-2013, version 0.8-15
9 : rhijmans 507 Added argument "concept" to function gbif to allow querying for synonyms. Suggested by Aaron Dodd
10 : rhijmans 515 Added additional threshold statistics suggested by Diego Nieto-Lugilde
11 :     Some general clean-up to stay in sync with CRAN requirements
12 : rhijmans 454
13 :     --- 4-January-2013, version 0.8-5
14 : rhijmans 449 Improved "mess" function (for speed and for large raster)
15 :     new functions "nicheEquivalency" and "nicheOverlap"
16 : rhijmans 454 bug fix in gridSample
17 :     new function 'threshold'
18 : rhijmans 432
19 : rhijmans 449 --- 1-September-2012, version 0.7-23
20 : rhijmans 418 Running Sys.setenv(NOAWT=TRUE) before calling rJava, to solve maxent/mac issues. Suggested by Pascal Title.
21 :     New function "mess" by Jean-Pierre Rossi
22 :    
23 : rhijmans 383 --- 6-February-2012, version 0.7-17
24 : rhijmans 377 New argument to pwdSample, "nearest", suggested by Kumar Mainali
25 : rhijmans 382 maxent no longer needs to write a parameters file to disk to make a prediction (this led in some cases to problems when using a cluster; reported by Rafael W├╝est).
26 : rhijmans 377
27 :     --- January-2012, version 0.7-14
28 :     function gbif now attempts to download the data n times if downloads are interrupted (likely because of high traffic loads at the gbif server). Suggestion and changed code provided by John Baumgartner.
29 :    
30 : rhijmans 364 --- 30-November-2011, version 0.7-13
31 :     New 'ext' argument to gbif function to allow for querying for a geographic region
32 :     imrovements to 'response'
33 :     Fixed bug in 'evaluate' when using > 1000 evaluation points, discovered by Diego Nieto Lugilde
34 :    
35 : rhijmans 357 --- 18-October-2011, version 0.7-12
36 :     Fixed a problem with maxent that could occur when predicting from a an object fitted on another machine. Reported by Adam Smith: https://r-forge.r-project.org/forum/message.php?msg_id=5060
37 : rhijmans 353 Fixed bug in biogeomancer function
38 : rhijmans 357 Fixed bug in .pointsInPolygon function that (randomly) affected evaluation of the circles, voronoiHull, and convHull models.
39 : rhijmans 353
40 : rhijmans 342 --- 6-September-2011, version 0.7-8
41 : rhijmans 382 maxent argument 'replicates= ' is now supported
42 : rhijmans 342
43 : rhijmans 357 --- 1-September-2011, version 0.7-6
44 : rhijmans 334 New functions ssb (spatial sorting bias) and pwdSample (pair-wise distance sampling)
45 :     Several minor bug fixes.
46 :     Improved vignette (still under development).
47 :    
48 : rhijmans 324 --- 3-July-2011, version 0.7-1
49 :     maxent predict failure fixed by adding distpatch=TRUE to .jarray() (bug reported by Stella Copeland)
50 : rhijmans 323 rJava is now suggested instead of required (and its namespace not imported), such that dismo can be loaded if rJava is absent or complains about missing variables (JAVA_PATH) or libraries.
51 :    
52 : rhijmans 308 --- 29-May-2011, version 0.6-9
53 :     Removed bug in gbif function with sp=TRUE, reported by Luis Cayuela
54 :    
55 : rhijmans 305 --- 18-May-2011, version 0.6-8
56 :     Additional arguments to the response function
57 :     Option to provide a filename to permanently save MaxEnt model output
58 :    
59 : rhijmans 290 --- 30-Mar-2011, version 0.6-5
60 : rhijmans 293 New function 'response' to show single variable response curves (with the other variables at e.g. their median values)
61 : rhijmans 290 DistModel object has changed. presence and absence data are now stored as data.frames, not matrices.
62 :    
63 : rhijmans 285 --- 13-Mar-2011, version 0.6-1
64 :     Documentation changes to pass 'check' in R 2.13.0 (exported classes now all documented)
65 :    
66 : rhijmans 283 --- 2-March-2011, version 0.6-0
67 :     Another bug-fix in biovars. When writing results to file, only 12 layers were saved (reported by Marco & Jon Winchester)
68 : rhijmans 280
69 :     --- 26-January-2011, version 0.5-17
70 : rhijmans 258 Bug fixes in file writing in biovars (reported by Guinevere Wogan)
71 :     Starting this log

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