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[batman] Diff of /pkg/batman/man/Batman-Input.Rd
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Diff of /pkg/batman/man/Batman-Input.Rd

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revision 101, Tue Oct 23 13:28:09 2012 UTC revision 102, Tue Nov 20 19:20:27 2012 UTC
# Line 11  Line 11 
11          metabolitesList.csv,          metabolitesList.csv,
12          multi_data.csv,          multi_data.csv,
13          multi_data_user.csv,          multi_data_user.csv,
14          NMRdata.txt.}          NMRdata.txt.
15            }
16  \arguments{  \arguments{
17   \item{batmanOptions.txt}{Option file to be used by \code{batman}. A copy of this   \item{batmanOptions.txt}{Option file to be used by \code{batman}. A copy of this
18   file in the output directory is used for \code{batmanrerun}.   file in the output directory is used for \code{batmanrerun}.
19   The parameters in \code{batmanOptions.txt} file are explained here with example   The parameters in \code{batmanOptions.txt} file are explained here with example
20   input values. The parameters have to be listed in the particular order given here.   input values. The parameters have to be listed in the particular order given here,
21     and do not leave empty lines in between except beginning with the comment character "\%".
22     Please note that for version 1.0.9 and later, one more input line,
23    
24     "Use specified chemical shift for spectra (chemShiftperSpectra.csv) file (1/0): 0",
25    
26     is added at the end of this file.
27     For earlier version users updated to this version, running \code{batman} will
28     add the above input line at the end of the file if missing.
29    
30    
31    
# Line 28  Line 36 
36     \itemize{     \itemize{
37       \item{Put each set of ppm range in a pair of parentheses in the same line,       \item{Put each set of ppm range in a pair of parentheses in the same line,
38        separate start and end ppm values with a comma, separate each set of        separate start and end ppm values with a comma, separate each set of
39        ppm range with space.}}        ppm range with space. Note that, small number of spectra variables
40          may cause error in analysis, do not give very narrow ppm ranges and also check "Down sampling:"
41          factor below which used together may also left small number of spectra variables. }}
42    
43    
44    \code{Spectra range to be included: 1-3, 5}    \code{Spectra range to be included: 1-3, 5}

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