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Revision 1175 - Directory Listing
Modified Tue Jan 17 23:41:36 2006 UTC (13 years, 8 months ago) by bates
Munging the data frame

Revision 1174 - Directory Listing
Modified Mon Jan 16 20:03:48 2006 UTC (13 years, 8 months ago) by maechler
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings

Revision 1171 - Directory Listing
Modified Mon Jan 16 16:59:46 2006 UTC (13 years, 8 months ago) by bates
Extract the slot contents from S4 objects, not the component

Revision 1170 - Directory Listing
Modified Mon Jan 16 16:38:00 2006 UTC (13 years, 8 months ago) by bates
Throw an error for mcmcsamp on a GLMM, at least until it is implemented

Revision 1168 - Directory Listing
Modified Mon Jan 16 14:40:39 2006 UTC (13 years, 8 months ago) by bates
Modifications to propagate column names from an mer object to a VarCorr summary

Revision 1166 - Directory Listing
Modified Sun Jan 15 19:18:20 2006 UTC (13 years, 9 months ago) by bates
modifications to lmer and related classes

Revision 1165 - Directory Listing
Modified Sat Jan 14 23:41:55 2006 UTC (13 years, 9 months ago) by maechler
new coercion to dtr* and dsy* using isSymmetric() and isTriangular(); fix validity checking; some class descriptions

Revision 1162 - Directory Listing
Modified Fri Jan 13 23:47:38 2006 UTC (13 years, 9 months ago) by bates
Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

Revision 1160 - Directory Listing
Modified Fri Jan 13 23:45:45 2006 UTC (13 years, 9 months ago) by bates
Updating the list of slots on factorable and non-factorable classes

Revision 1156 - Directory Listing
Modified Thu Jan 12 23:39:56 2006 UTC (13 years, 9 months ago) by bates
Remove redundant registration of dspMatrix_trf; incorporate wts and wrkres slots in mer class

Revision 1150 - Directory Listing
Modified Thu Jan 12 03:41:25 2006 UTC (13 years, 9 months ago) by bates
Switch to supernodal Cholesky representation of mer objects

Revision 1148 - Directory Listing
Modified Thu Jan 12 03:37:40 2006 UTC (13 years, 9 months ago) by bates
Incorporation of correlation class

Revision 1147 - Directory Listing
Modified Thu Jan 12 03:36:53 2006 UTC (13 years, 9 months ago) by bates
Removal of dgBCMatrix class and coercion function

Revision 1145 - Directory Listing
Modified Thu Jan 12 03:26:06 2006 UTC (13 years, 9 months ago) by bates
Remove dgBCMatrix.[ch] and dependencies

Revision 1127 - Directory Listing
Modified Tue Jan 10 18:11:23 2006 UTC (13 years, 9 months ago) by maechler
add ", drop = FALSE" in lmer.coef constructions; plus a few comments

Revision 1123 - Directory Listing
Modified Tue Jan 10 17:04:29 2006 UTC (13 years, 9 months ago) by bates
Release 0.99-6

Revision 1109 - Directory Listing
Modified Tue Jan 3 16:42:31 2006 UTC (13 years, 9 months ago) by maechler
"diagonalMatrix" class and subclasses with a few methods; very basic "ltTMatrix" methods

Revision 1108 - Directory Listing
Modified Mon Jan 2 23:02:07 2006 UTC (13 years, 9 months ago) by maechler
isSymmetric() generic must match isSymmetric in R-devel

Revision 1098 - Directory Listing
Modified Thu Dec 29 11:38:59 2005 UTC (13 years, 9 months ago) by maechler
some 2-argument-tcrossprod methods (and test svn)

Revision 1090 - Directory Listing
Modified Mon Dec 12 13:58:10 2005 UTC (13 years, 10 months ago) by maechler
Brian's version of 2-arg tcrossprod()

Revision 1087 - Directory Listing
Modified Fri Dec 9 20:55:39 2005 UTC (13 years, 10 months ago) by maechler
make tcrossprod() use 2 arguments (x, y=NULL)

Revision 1084 - Directory Listing
Modified Fri Dec 9 15:41:00 2005 UTC (13 years, 10 months ago) by maechler
thinko in dimNamesCheck()

Revision 1063 - Directory Listing
Modified Sat Nov 26 16:29:39 2005 UTC (13 years, 10 months ago) by bates
Add zapsmall method

Revision 1059 - Directory Listing
Modified Wed Nov 23 22:20:13 2005 UTC (13 years, 10 months ago) by bates
Matrix multiplication and coersion at higher level

Revision 1056 - Directory Listing
Modified Tue Nov 22 16:40:49 2005 UTC (13 years, 10 months ago) by maechler
require(methods) needed according to the docs

Revision 1038 - Directory Listing
Modified Fri Nov 11 21:22:08 2005 UTC (13 years, 11 months ago) by bates
Adding PACKAGE = to .Call

Revision 1037 - Directory Listing
Modified Fri Nov 11 14:57:22 2005 UTC (13 years, 11 months ago) by bates
Adding PACKAGE = to .Call lines

Revision 987 - Directory Listing
Modified Tue Oct 25 17:38:46 2005 UTC (13 years, 11 months ago) by bates
need a drop = FALSE in a subscripting operation

Revision 986 - Directory Listing
Modified Fri Oct 21 19:36:30 2005 UTC (13 years, 11 months ago) by bates
Remove references to mer2 and mltloc.rda which are now in a branch

Revision 984 - Directory Listing
Modified Tue Oct 11 18:08:46 2005 UTC (14 years ago) by bates
Tidying up

Revision 981 - Directory Listing
Modified Tue Oct 11 14:12:19 2005 UTC (14 years ago) by bates
Evaluate model frame before glm model of fixed effects

Revision 979 - Directory Listing
Modified Tue Oct 11 00:02:45 2005 UTC (14 years ago) by bates
Added a FIXME - will fix later

Revision 978 - Directory Listing
Modified Mon Oct 10 13:54:09 2005 UTC (14 years ago) by bates
More mer2 modifications

Revision 973 - Directory Listing
Modified Fri Oct 7 20:15:08 2005 UTC (14 years ago) by maechler
isSymmetric() & simulate() updates; sparse subsetting

Revision 972 - Directory Listing
Modified Fri Oct 7 20:13:24 2005 UTC (14 years ago) by maechler
comments and more (hidden) as.Matrix utilities

Revision 967 - Directory Listing
Modified Thu Oct 6 03:07:23 2005 UTC (14 years ago) by bates
More updates on lmer - still not quite correct

Revision 965 - Directory Listing
Modified Wed Oct 5 16:57:55 2005 UTC (14 years ago) by maechler
(comments)

Revision 963 - Directory Listing
Modified Mon Oct 3 01:44:56 2005 UTC (14 years ago) by bates
Modifications to mer2

Revision 959 - Directory Listing
Modified Sat Oct 1 20:10:20 2005 UTC (14 years ago) by maechler
dtC -> dgC coercion

Revision 958 - Directory Listing
Modified Sat Oct 1 20:08:51 2005 UTC (14 years ago) by maechler
add "self-documenting" argument names

Revision 956 - Directory Listing
Modified Fri Sep 30 17:28:00 2005 UTC (14 years ago) by maechler
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...

Revision 954 - Directory Listing
Modified Wed Sep 28 19:34:31 2005 UTC (14 years ago) by maechler
more "Compare" and some "!" methods; expm() for sparse; updated tests

Revision 953 - Directory Listing
Modified Wed Sep 28 19:31:36 2005 UTC (14 years ago) by maechler
move "factors" slot to "Matrix"

Revision 949 - Directory Listing
Modified Wed Sep 28 09:17:08 2005 UTC (14 years ago) by maechler
cleanup

Revision 946 - Directory Listing
Modified Wed Sep 28 08:56:42 2005 UTC (14 years ago) by maechler
some "Summary" methods; some "Compare" group methods; logical dense matrices

Revision 940 - Directory Listing
Modified Tue Sep 27 00:50:35 2005 UTC (14 years ago) by bates
Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

Revision 939 - Directory Listing
Modified Tue Sep 20 17:23:24 2005 UTC (14 years ago) by bates
More careful checking for linear mixed model

Revision 936 - Directory Listing
Modified Tue Sep 20 10:15:26 2005 UTC (14 years ago) by maechler
move setGeneric to AllGeneric

Revision 928 - Directory Listing
Modified Mon Sep 19 21:10:59 2005 UTC (14 years ago) by bates
crossprod and tcrossprod for Tsparse

Revision 925 - Directory Listing
Modified Mon Sep 19 19:01:31 2005 UTC (14 years ago) by maechler
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more  "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

Revision 923 - Directory Listing
Modified Sun Sep 18 23:41:45 2005 UTC (14 years ago) by bates
More progress on incorporating CHOLMOD - still not passing CMD check

Revision 922 - Directory Listing
Modified Sun Sep 18 16:33:54 2005 UTC (14 years ago) by bates
Added CHOLMOD-based C functions.  Still need methods defined in R and some error checking

Revision 919 - Directory Listing
Modified Fri Sep 16 17:27:06 2005 UTC (14 years, 1 month ago) by maechler
new compressed_non_0_ij()

Revision 910 - Directory Listing
Modified Fri Sep 9 08:12:58 2005 UTC (14 years, 1 month ago) by maechler
comments & update for Diagonal

Revision 908 - Directory Listing
Modified Thu Sep 8 15:30:08 2005 UTC (14 years, 1 month ago) by maechler
cbind() / cbind2() methods for R >= 2.2.0

Revision 904 - Directory Listing
Modified Wed Sep 7 20:43:59 2005 UTC (14 years, 1 month ago) by bates
Fix readHB according to bug report from Roger Koenker

Revision 902 - Directory Listing
Modified Tue Sep 6 14:07:10 2005 UTC (14 years, 1 month ago) by bates


Revision 901 - Directory Listing
Modified Tue Sep 6 01:26:11 2005 UTC (14 years, 1 month ago) by bates
Add "start" argument to lmer

Revision 898 - Directory Listing
Modified Sat Sep 3 21:58:37 2005 UTC (14 years, 1 month ago) by maechler
+ prototypes for validity; pMatrix validity

Revision 897 - Directory Listing
Modified Sat Sep 3 21:57:55 2005 UTC (14 years, 1 month ago) by maechler
cosmetic: stay within integers

Revision 892 - Directory Listing
Modified Fri Sep 2 13:40:47 2005 UTC (14 years, 1 month ago) by maechler
move some methods from lgT to lsparse

Revision 888 - Directory Listing
Modified Thu Sep 1 13:46:21 2005 UTC (14 years, 1 month ago) by bates
New simulate method for lmer objects

Revision 887 - Directory Listing
Modified Wed Aug 31 20:31:47 2005 UTC (14 years, 1 month ago) by maechler
uplo &diag slots now go with superclass triangular* or symmetric*

Revision 886 - Directory Listing
Modified Wed Aug 31 17:49:47 2005 UTC (14 years, 1 month ago) by maechler
new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do

Revision 880 - Directory Listing
Modified Tue Aug 30 14:36:41 2005 UTC (14 years, 1 month ago) by bates
More coercion methods

Revision 879 - Directory Listing
Modified Tue Aug 30 14:35:05 2005 UTC (14 years, 1 month ago) by bates
Added simulate generic and method

Revision 878 - Directory Listing
Modified Sun Aug 28 13:57:39 2005 UTC (14 years, 1 month ago) by bates
Add simulate method for lmer

Revision 876 - Directory Listing
Modified Sat Aug 27 22:50:57 2005 UTC (14 years, 1 month ago) by bates
clean up conversion of graphNEL to sparseMatrix

Revision 875 - Directory Listing
Modified Sat Aug 27 21:29:21 2005 UTC (14 years, 1 month ago) by maechler
indexing (mainly denseMatrix) - using "vector" indices

Revision 874 - Directory Listing
Modified Sat Aug 27 21:27:51 2005 UTC (14 years, 1 month ago) by maechler
prepare graphNEL coercion both for directed and undir.

Revision 871 - Directory Listing
Modified Fri Aug 26 17:26:49 2005 UTC (14 years, 1 month ago) by maechler
Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples

Revision 870 - Directory Listing
Modified Fri Aug 26 17:25:03 2005 UTC (14 years, 1 month ago) by maechler
"Summary" method -> found R-bug

Revision 868 - Directory Listing
Modified Fri Aug 19 17:01:11 2005 UTC (14 years, 1 month ago) by maechler
printing of sparse logicals; "[" reorganization (part 1)

Revision 867 - Directory Listing
Modified Fri Aug 19 16:59:46 2005 UTC (14 years, 1 month ago) by maechler
new "gTMatrix" virtual class

Revision 865 - Directory Listing
Modified Fri Aug 19 16:57:49 2005 UTC (14 years, 1 month ago) by maechler
setAs( to "lgTMatrix" )

Revision 864 - Directory Listing
Modified Thu Aug 18 21:36:49 2005 UTC (14 years, 1 month ago) by bates
It's 'warning', not 'warn'

Revision 862 - Directory Listing
Modified Thu Aug 18 21:31:07 2005 UTC (14 years, 1 month ago) by bates
Coercion method for graphNEL to sparseMatrix class

Revision 861 - Directory Listing
Modified Thu Aug 18 21:29:52 2005 UTC (14 years, 1 month ago) by bates
Fix column labels on mcmcsamp for glmer objects

Revision 857 - Directory Listing
Modified Tue Aug 16 22:19:58 2005 UTC (14 years, 2 months ago) by bates
Change method of reading Harwell-Boeing matrix format and change example

Revision 856 - Directory Listing
Modified Tue Aug 16 20:20:13 2005 UTC (14 years, 2 months ago) by maechler
small fixups

Revision 855 - Directory Listing
Modified Tue Aug 16 18:57:36 2005 UTC (14 years, 2 months ago) by maechler
first place to use callNextMethod()

Revision 852 - Directory Listing
Modified Tue Aug 16 17:52:16 2005 UTC (14 years, 2 months ago) by bates
Move readHB and readMM to R code and allow the use of connections

Revision 851 - Directory Listing
Modified Tue Aug 16 17:39:38 2005 UTC (14 years, 2 months ago) by maechler
export  dgR*, dsR* & dtR* Matrix - and "fix" stubs

Revision 848 - Directory Listing
Modified Thu Aug 11 07:41:59 2005 UTC (14 years, 2 months ago) by maechler
+"denseMatrix" class; export defined but unused classes

Revision 846 - Directory Listing
Modified Wed Aug 10 22:08:35 2005 UTC (14 years, 2 months ago) by bates
Release 0.98-3

Revision 843 - Directory Listing
Modified Wed Aug 10 18:24:18 2005 UTC (14 years, 2 months ago) by maechler
comment

Revision 842 - Directory Listing
Modified Tue Aug 9 14:23:37 2005 UTC (14 years, 2 months ago) by bates
Modify column names for transformed parameters in mcmcsamp

Revision 835 - Directory Listing
Modified Mon Aug 8 13:33:18 2005 UTC (14 years, 2 months ago) by bates
Add writeHB and writeMM methods and generic

Revision 833 - Directory Listing
Modified Mon Aug 8 08:35:17 2005 UTC (14 years, 2 months ago) by maechler
fixing to unused Lower/Upper Triangular test functions

Revision 832 - Directory Listing
Modified Mon Aug 8 08:33:55 2005 UTC (14 years, 2 months ago) by maechler
lmer()`s "model = T/F" and control arguments; add comments and "FIXME"s

Revision 831 - Directory Listing
Modified Mon Aug 8 08:24:10 2005 UTC (14 years, 2 months ago) by maechler
note on setGeneric("lmer",*) - match.call() pecularity

Revision 829 - Directory Listing
Modified Mon Aug 8 08:21:47 2005 UTC (14 years, 2 months ago) by maechler
re-assign as.matrix() in base (!) -- experimental

Revision 825 - Directory Listing
Modified Sun Aug 7 15:22:33 2005 UTC (14 years, 2 months ago) by bates
Harwell-Boeing and MatrixMarket formats

Revision 824 - Directory Listing
Modified Sat Aug 6 20:01:51 2005 UTC (14 years, 2 months ago) by bates
Allow mcmcsamp on transformed parameters

Revision 823 - Directory Listing
Modified Sat Jul 30 21:35:38 2005 UTC (14 years, 2 months ago) by maechler
+ tcrossprod() method for simple "matrix" and "numeric"

Revision 820 - Directory Listing
Modified Wed Jul 27 23:07:04 2005 UTC (14 years, 2 months ago) by bates
Version 0.98-1

Revision 814 - Directory Listing
Modified Thu Jul 21 23:05:52 2005 UTC (14 years, 2 months ago) by bates
Working version of the glmmMCMC producing an mcmc object

Revision 813 - Directory Listing
Modified Thu Jul 21 16:41:42 2005 UTC (14 years, 2 months ago) by bates
New sampling for glmerMCMC but intermediates are not appropriately PROTECTed

Revision 812 - Directory Listing
Modified Thu Jul 21 14:59:04 2005 UTC (14 years, 2 months ago) by bates
Added an rWishart function, which should later be moved to the stats package

Revision 811 - Directory Listing
Modified Thu Jul 14 15:37:41 2005 UTC (14 years, 3 months ago) by bates
Modifications to glmmMCMC

Revision 810 - Directory Listing
Modified Thu Jul 14 13:48:38 2005 UTC (14 years, 3 months ago) by bates
Modifications to glmmMCMC

Revision 809 - Directory Listing
Modified Tue Jul 12 23:00:50 2005 UTC (14 years, 3 months ago) by bates
Release 0.97-4 with fix suggested by DTL

Revision 806 - Directory Listing
Modified Fri Jul 8 15:38:43 2005 UTC (14 years, 3 months ago) by bates
Preliminary version of glmmMCMC

Revision 804 - Directory Listing
Modified Thu Jul 7 20:05:47 2005 UTC (14 years, 3 months ago) by bates
Preparing for glmmMCMC

Revision 802 - Directory Listing
Modified Wed Jul 6 23:55:39 2005 UTC (14 years, 3 months ago) by bates
got glmer_fixed_update working

Revision 801 - Directory Listing
Modified Wed Jul 6 16:24:33 2005 UTC (14 years, 3 months ago) by bates
Updates for release 0.97-2

Revision 799 - Directory Listing
Modified Tue Jul 5 00:37:34 2005 UTC (14 years, 3 months ago) by bates
Increase default maxIter and calculate nAGQ more carefully

Revision 792 - Directory Listing
Modified Sat Jul 2 20:58:14 2005 UTC (14 years, 3 months ago) by maechler
cosmetic

Revision 787 - Directory Listing
Modified Thu Jun 30 16:59:12 2005 UTC (14 years, 3 months ago) by bates
Still modifying glmer_devAGQ

Revision 784 - Directory Listing
Modified Sun Jun 26 03:42:21 2005 UTC (14 years, 3 months ago) by bates
More work on MCMC (still incomplete)

Revision 782 - Directory Listing
Modified Fri Jun 24 23:06:33 2005 UTC (14 years, 3 months ago) by bates
Adding MCMC capability (currently incomplete)

Revision 781 - Directory Listing
Modified Fri Jun 24 15:38:43 2005 UTC (14 years, 3 months ago) by bates
Further development on AGQ and MCMC for glmm models

Revision 780 - Directory Listing
Modified Sun Jun 19 14:59:30 2005 UTC (14 years, 3 months ago) by bates
Release 0.96-3

Revision 779 - Directory Listing
Modified Wed Jun 15 15:52:19 2005 UTC (14 years, 4 months ago) by bates
Adding AGQ (but not yet correct)

Revision 777 - Directory Listing
Modified Tue Jun 14 04:02:57 2005 UTC (14 years, 4 months ago) by bates
release 0.96-2

Revision 776 - Directory Listing
Modified Mon Jun 13 19:45:04 2005 UTC (14 years, 4 months ago) by bates
Setting up for AGQ

Revision 775 - Directory Listing
Modified Mon Jun 13 01:22:28 2005 UTC (14 years, 4 months ago) by bates
Factoring C code in preparation for AGQ

Revision 774 - Directory Listing
Modified Fri Jun 10 18:40:54 2005 UTC (14 years, 4 months ago) by bates
Moving devLaplace calculations to C code

Revision 772 - Directory Listing
Modified Thu Jun 9 16:57:55 2005 UTC (14 years, 4 months ago) by bates
Prepare for release 0.96-1

Revision 769 - Directory Listing
Modified Wed Jun 8 23:47:45 2005 UTC (14 years, 4 months ago) by bates
Moving lmer to the Matrix package

Revision 760 - Directory Listing
Modified Mon Jun 6 15:48:13 2005 UTC (14 years, 4 months ago) by bates
Fix matrix multiplication methods

Revision 731 - Directory Listing
Modified Tue May 17 17:17:29 2005 UTC (14 years, 5 months ago) by bates
Cosmetic changes

Revision 730 - Directory Listing
Modified Tue May 17 17:16:53 2005 UTC (14 years, 5 months ago) by bates
Adding logical sparse matrix methods

Revision 729 - Directory Listing
Modified Tue May 17 17:16:39 2005 UTC (14 years, 5 months ago) by bates
Adding logical sparse matrix methods

Revision 723 - Directory Listing
Modified Tue May 10 01:42:05 2005 UTC (14 years, 5 months ago) by bates
More logical sparse matrix methods

Revision 720 - Directory Listing
Modified Mon May 9 01:32:44 2005 UTC (14 years, 5 months ago) by bates
Methods for logical general sparse matrices

Revision 718 - Directory Listing
Modified Mon May 9 01:24:35 2005 UTC (14 years, 5 months ago) by bates
Getting ready for a release

Revision 714 - Directory Listing
Modified Fri May 6 23:52:34 2005 UTC (14 years, 5 months ago) by bates
Added colSums and friends for dgeMatrix class

Revision 703 - Directory Listing
Modified Thu Apr 21 22:00:04 2005 UTC (14 years, 5 months ago) by bates
Replace identical(TRUE, ...) by isTRUE(...)

Revision 702 - Directory Listing
Modified Thu Apr 21 13:00:36 2005 UTC (14 years, 5 months ago) by bates
Moving Doxyfile

Revision 699 - Directory Listing
Modified Mon Apr 18 20:20:46 2005 UTC (14 years, 5 months ago) by maechler
comment out "integer" methods: those are now part of "numeric"

Revision 698 - Directory Listing
Modified Mon Apr 18 20:20:04 2005 UTC (14 years, 5 months ago) by maechler
numeric x dgeMatrix : for solve etc; semi-activate the as.Matrix() idea

Revision 693 - Directory Listing
Modified Mon Apr 18 17:02:26 2005 UTC (14 years, 5 months ago) by bates
In R-2.1.0 matrix dispatches before integer so always set storage.mode on objects of class "matrix"

Revision 692 - Directory Listing
Modified Mon Apr 18 14:34:33 2005 UTC (14 years, 5 months ago) by bates
Release 0.95-6

Revision 687 - Directory Listing
Modified Fri Apr 1 07:36:09 2005 UTC (14 years, 6 months ago) by maechler
"[" and show() methods for sparse matrices => RFC

Revision 686 - Directory Listing
Modified Thu Mar 31 21:19:35 2005 UTC (14 years, 6 months ago) by bates
Create "fallback" methods for any kind of numeric, dense matrix

Revision 684 - Directory Listing
Modified Thu Mar 31 17:56:46 2005 UTC (14 years, 6 months ago) by bates
Multiplication operations for sparseMatrix and ddenseMatrix

Revision 683 - Directory Listing
Modified Thu Mar 31 17:10:16 2005 UTC (14 years, 6 months ago) by bates
Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class

Revision 677 - Directory Listing
Modified Mon Mar 28 14:03:32 2005 UTC (14 years, 6 months ago) by bates
Added dgRMatrix methods and documentation

Revision 676 - Directory Listing
Modified Sat Mar 26 15:59:18 2005 UTC (14 years, 6 months ago) by maechler
+ virtual "sparseMatrix" classes

Revision 666 - Directory Listing
Modified Thu Mar 24 13:50:16 2005 UTC (14 years, 6 months ago) by bates
Add replace functions to calls to setIs for symmetric to positive definite

Revision 665 - Directory Listing
Modified Thu Mar 24 13:06:09 2005 UTC (14 years, 6 months ago) by bates
Removing the ssclme and sscCrosstab classes

Revision 664 - Directory Listing
Modified Thu Mar 24 13:00:09 2005 UTC (14 years, 6 months ago) by maechler
make virtual classes "VIRTUAL"

Revision 662 - Directory Listing
Modified Wed Mar 23 17:34:59 2005 UTC (14 years, 6 months ago) by bates
Moving all ssclme-related R code to the lme4 package

Revision 658 - Directory Listing
Modified Thu Mar 17 17:52:06 2005 UTC (14 years, 7 months ago) by maechler
+ as.matrix() + unname() method

Revision 657 - Directory Listing
Modified Wed Mar 16 16:57:52 2005 UTC (14 years, 7 months ago) by maechler
more %*% and setAs(); tests too

Revision 656 - Directory Listing
Modified Wed Mar 16 16:55:32 2005 UTC (14 years, 7 months ago) by maechler
rename s/M.n/M.v/ etc

Revision 654 - Directory Listing
Modified Wed Mar 16 16:18:33 2005 UTC (14 years, 7 months ago) by bates
Generalize matrix multiplication and solve methods

Revision 653 - Directory Listing
Modified Wed Mar 16 16:17:43 2005 UTC (14 years, 7 months ago) by bates
include permutation in expand method for LU

Revision 652 - Directory Listing
Modified Wed Mar 16 01:08:36 2005 UTC (14 years, 7 months ago) by bates
Updates to multiplication and other methods

Revision 650 - Directory Listing
Modified Tue Mar 15 01:53:58 2005 UTC (14 years, 7 months ago) by bates
Correct the coercion to matrix

Revision 643 - Directory Listing
Modified Tue Mar 15 00:50:48 2005 UTC (14 years, 7 months ago) by bates
Adding many methods for the dsyMatrix class

Revision 642 - Directory Listing
Modified Tue Mar 15 00:49:32 2005 UTC (14 years, 7 months ago) by bates
'unpack' methods

Revision 641 - Directory Listing
Modified Tue Mar 15 00:48:34 2005 UTC (14 years, 7 months ago) by bates
Clean up the 't' method

Revision 638 - Directory Listing
Modified Tue Mar 15 00:43:21 2005 UTC (14 years, 7 months ago) by bates
permutation matrix class

Revision 635 - Directory Listing
Modified Tue Mar 15 00:40:26 2005 UTC (14 years, 7 months ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 632 - Directory Listing
Modified Sun Mar 13 21:00:53 2005 UTC (14 years, 7 months ago) by maechler
mv some to new Auxiliaries file (early in alphabetic sorting!)

Revision 631 - Directory Listing
Modified Sun Mar 13 04:34:52 2005 UTC (14 years, 7 months ago) by bates
Add BunchKaufman factorization

Revision 628 - Directory Listing
Modified Thu Mar 10 17:57:47 2005 UTC (14 years, 7 months ago) by maechler
more  %*% methods; some dimnames in C (untested); checks extended

Revision 619 - Directory Listing
Modified Sat Mar 5 21:21:31 2005 UTC (14 years, 7 months ago) by maechler
comments and cosmetic, setAs(.) first

Revision 618 - Directory Listing
Modified Sat Mar 5 21:20:42 2005 UTC (14 years, 7 months ago) by maechler
extended show Method, testing for "Matrix"; rather "ddenseMatrix" -> "matrix"

Revision 617 - Directory Listing
Modified Sat Mar 5 21:19:13 2005 UTC (14 years, 7 months ago) by maechler
+ setAs(*, "matrix")

Revision 616 - Directory Listing
Modified Sat Mar 5 21:17:40 2005 UTC (14 years, 7 months ago) by maechler
+ 2 crossprod methods

Revision 615 - Directory Listing
Modified Sat Mar 5 21:17:04 2005 UTC (14 years, 7 months ago) by maechler
L <-> U for transpose

Revision 610 - Directory Listing
Modified Fri Mar 4 17:34:19 2005 UTC (14 years, 7 months ago) by maechler
comments only

Revision 609 - Directory Listing
Modified Fri Mar 4 17:34:03 2005 UTC (14 years, 7 months ago) by maechler
add more %*% methods

Revision 608 - Directory Listing
Modified Fri Mar 4 17:33:29 2005 UTC (14 years, 7 months ago) by maechler
- move dim, dimnames, dimnames<-  methods to "Matrix" 
- add more %*% methods

Revision 607 - Directory Listing
Modified Fri Mar 4 17:33:03 2005 UTC (14 years, 7 months ago) by maechler
- move dim, dimnames, dimnames<-  methods from "dgeMatrix" to here
- setAs(* , to = "matrix")

Revision 606 - Directory Listing
Modified Fri Mar 4 17:29:37 2005 UTC (14 years, 7 months ago) by maechler
add "dMatrix" group methods and doc file

Revision 603 - Directory Listing
Modified Fri Mar 4 12:53:01 2005 UTC (14 years, 7 months ago) by bates
Define %*% method for dtpMatrix and matrix properly

Revision 597 - Directory Listing
Modified Thu Mar 3 19:58:59 2005 UTC (14 years, 7 months ago) by bates
Methods and coercions for the dtpMatrix class

Revision 593 - Directory Listing
Modified Thu Mar 3 05:17:32 2005 UTC (14 years, 7 months ago) by bates
Remove pdfactor class

Revision 589 - Directory Listing
Modified Wed Mar 2 19:53:53 2005 UTC (14 years, 7 months ago) by bates
more coercions

Revision 583 - Directory Listing
Modified Tue Mar 1 11:42:12 2005 UTC (14 years, 7 months ago) by maechler
dgCMatrix: needs explicit "dim" method (should not be needed!)

Revision 579 - Directory Listing
Modified Sun Feb 27 00:04:16 2005 UTC (14 years, 7 months ago) by maechler
dimnames(), "dimnames() <-", better t(), etc

Revision 574 - Directory Listing
Modified Sat Feb 26 18:06:32 2005 UTC (14 years, 7 months ago) by maechler
cosmetic

Revision 573 - Directory Listing
Modified Sat Feb 26 18:06:08 2005 UTC (14 years, 7 months ago) by maechler
more group methods and testing them

Revision 561 - Directory Listing
Modified Fri Feb 18 19:24:43 2005 UTC (14 years, 7 months ago) by bates
Release 0.95-1

Revision 557 - Directory Listing
Modified Thu Feb 17 01:18:02 2005 UTC (14 years, 7 months ago) by bates
Coercions and methods for the dsTMatrix class

Revision 552 - Directory Listing
Modified Tue Feb 15 23:39:40 2005 UTC (14 years, 7 months ago) by bates
triangular, triplet sparse matrices

Revision 542 - Directory Listing
Modified Thu Feb 10 17:30:10 2005 UTC (14 years, 8 months ago) by maechler
"Arith" group methods work!

Revision 541 - Directory Listing
Modified Thu Feb 10 14:36:45 2005 UTC (14 years, 8 months ago) by maechler
oops!

Revision 540 - Directory Listing
Modified Thu Feb 10 14:32:59 2005 UTC (14 years, 8 months ago) by maechler
more "Done"

Revision 538 - Directory Listing
Modified Thu Feb 10 13:50:27 2005 UTC (14 years, 8 months ago) by maechler
add @Dimnames (-> new "mm")

Revision 536 - Directory Listing
Modified Thu Feb 10 08:15:12 2005 UTC (14 years, 8 months ago) by bates
rearranging utility functions in the C code

Revision 523 - Directory Listing
Modified Mon Feb 7 09:25:50 2005 UTC (14 years, 8 months ago) by maechler
stop() for error()

Revision 521 - Directory Listing
Modified Sat Feb 5 17:04:56 2005 UTC (14 years, 8 months ago) by maechler
small update

Revision 513 - Directory Listing
Modified Fri Feb 4 23:46:08 2005 UTC (14 years, 8 months ago) by maechler
require() is not needed; ddense.. for "dsp"; cosmetic

Revision 512 - Directory Listing
Modified Fri Feb 4 23:45:12 2005 UTC (14 years, 8 months ago) by maechler
better show(); using new option "max.print"

Revision 510 - Directory Listing
Modified Fri Feb 4 23:36:17 2005 UTC (14 years, 8 months ago) by maechler
dimnames?

Revision 499 - Directory Listing
Modified Fri Feb 4 18:16:32 2005 UTC (14 years, 8 months ago) by maechler
- wrap line
- if(.) style in as.Matrix()

Revision 498 - Directory Listing
Modified Fri Feb 4 18:15:54 2005 UTC (14 years, 8 months ago) by maechler
cosmetic

Revision 495 - Directory Listing
Modified Thu Feb 3 18:48:31 2005 UTC (14 years, 8 months ago) by bates
Initial implementation of the Schur generic

Revision 494 - Directory Listing
Modified Thu Feb 3 18:47:41 2005 UTC (14 years, 8 months ago) by bates
Cleanup

Revision 492 - Directory Listing
Modified Thu Feb 3 14:24:03 2005 UTC (14 years, 8 months ago) by bates
Getting package to pass CMD check

Revision 489 - Directory Listing
Modified Wed Feb 2 19:12:03 2005 UTC (14 years, 8 months ago) by bates
renaming and rearranging classes

Revision 483 - Directory Listing
Modified Wed Feb 2 16:11:21 2005 UTC (14 years, 8 months ago) by bates
renaming and rearranging classes

Revision 482 - Directory Listing
Modified Wed Feb 2 15:37:31 2005 UTC (14 years, 8 months ago) by bates
renaming and rearranging classes

Revision 477 - Directory Listing
Modified Wed Feb 2 14:14:59 2005 UTC (14 years, 8 months ago) by bates
Renaming and reorganizing classes

Revision 476 - Directory Listing
Modified Wed Feb 2 11:51:24 2005 UTC (14 years, 8 months ago) by bates
Change name of slot from factorization to factors

Revision 475 - Directory Listing
Modified Tue Feb 1 14:44:06 2005 UTC (14 years, 8 months ago) by maechler
Martin`s cosmetics

Revision 474 - Directory Listing
Modified Tue Feb 1 14:41:24 2005 UTC (14 years, 8 months ago) by maechler
Hilbert(0)

Revision 471 - Directory Listing
Modified Mon Jan 31 21:17:57 2005 UTC (14 years, 8 months ago) by maechler
as.Matrix() shorter; cosmetic

Revision 461 - Directory Listing
Modified Sat Jan 29 14:09:38 2005 UTC (14 years, 8 months ago) by bates
Add expm function

Revision 451 - Directory Listing
Modified Sun Jan 23 10:05:53 2005 UTC (14 years, 8 months ago) by bates
New coercion method for cscBlocked objects

Revision 448 - Directory Listing
Modified Fri Jan 21 21:59:45 2005 UTC (14 years, 8 months ago) by bates
Release 0.8-23

Revision 440 - Directory Listing
Modified Wed Jan 19 11:21:28 2005 UTC (14 years, 8 months ago) by bates
Remove Linv slot in lmer class

Revision 436 - Directory Listing
Modified Mon Jan 17 12:46:13 2005 UTC (14 years, 8 months ago) by bates
Add slots to lmer class

Revision 433 - Directory Listing
Modified Thu Jan 13 19:35:19 2005 UTC (14 years, 9 months ago) by bates
Add the bVar slot to the lmer object

Revision 419 - Directory Listing
Modified Mon Jan 3 19:21:18 2005 UTC (14 years, 9 months ago) by bates
Change to the lmer representation

Revision 417 - Directory Listing
Modified Mon Jan 3 19:14:22 2005 UTC (14 years, 9 months ago) by bates
Change to the lmer representation

Revision 410 - Directory Listing
Modified Tue Dec 28 14:51:42 2004 UTC (14 years, 9 months ago) by bates
Working on the lmer classes

Revision 391 - Directory Listing
Modified Tue Dec 14 20:00:15 2004 UTC (14 years, 10 months ago) by bates
Add a coercion for tripletMatrix to matrix

Revision 353 - Directory Listing
Modified Sat Nov 27 01:43:15 2004 UTC (14 years, 10 months ago) by bates
Make factor reordering for bCrosstab optional

Revision 349 - Directory Listing
Modified Tue Nov 23 15:39:23 2004 UTC (14 years, 10 months ago) by bates
Change name of blocked/blocked crosstabulation to blocked crosstabulation

Revision 348 - Directory Listing
Modified Tue Nov 23 15:38:31 2004 UTC (14 years, 10 months ago) by bates
add blocked crosstabulations

Revision 337 - Directory Listing
Modified Fri Nov 12 21:13:59 2004 UTC (14 years, 11 months ago) by bates
Add addition method

Revision 336 - Directory Listing
Modified Fri Nov 12 21:13:40 2004 UTC (14 years, 11 months ago) by bates
Add tcrossprod method

Revision 335 - Directory Listing
Modified Fri Nov 12 21:12:54 2004 UTC (14 years, 11 months ago) by bates
Add cscBlocked class

Revision 334 - Directory Listing
Modified Fri Nov 12 21:11:45 2004 UTC (14 years, 11 months ago) by bates
Add generics

Revision 333 - Directory Listing
Modified Fri Nov 12 21:10:17 2004 UTC (14 years, 11 months ago) by bates
Add classes

Revision 325 - Directory Listing
Modified Sat Nov 6 18:03:00 2004 UTC (14 years, 11 months ago) by bates
Add blocked/blocked cross-tabulation class

Revision 324 - Directory Listing
Modified Sat Nov 6 18:02:01 2004 UTC (14 years, 11 months ago) by bates
Cosmetic changes

Revision 302 - Directory Listing
Modified Wed Oct 27 21:32:37 2004 UTC (14 years, 11 months ago) by bates
Remove PACKAGE="Matrix" in .Call

Revision 296 - Directory Listing
Modified Mon Oct 4 17:13:29 2004 UTC (15 years ago) by bates
Add registration of .Call functions

Revision 291 - Directory Listing
Modified Sun Oct 3 21:51:33 2004 UTC (15 years ago) by bates
Release 0.8-15

Revision 290 - Directory Listing
Modified Sat Oct 2 19:22:24 2004 UTC (15 years ago) by deepayan
fixed minor bug in panel function

Revision 283 - Directory Listing
Modified Sat Oct 2 17:05:34 2004 UTC (15 years ago) by bates
check for lattice package in image methods

Revision 279 - Directory Listing
Modified Sat Sep 11 14:40:25 2004 UTC (15 years, 1 month ago) by deepayan
fixed image method

Revision 272 - Directory Listing
Modified Thu Sep 2 23:14:00 2004 UTC (15 years, 1 month ago) by bates
Add cscBlocked, tweak lmeRep

Revision 268 - Directory Listing
Modified Tue Aug 31 19:13:33 2004 UTC (15 years, 1 month ago) by bates
New version

Revision 263 - Directory Listing
Modified Thu Aug 26 16:01:35 2004 UTC (15 years, 1 month ago) by bates
extending lmeRep to multiple nested grouping factors

Revision 257 - Directory Listing
Modified Tue Aug 24 02:08:08 2004 UTC (15 years, 1 month ago) by bates
Remove taucs, add lmeRep, new release

Revision 255 - Directory Listing
Modified Fri Aug 20 16:27:15 2004 UTC (15 years, 1 month ago) by bates
Add the lmeRep class

Revision 254 - Directory Listing
Modified Thu Aug 19 15:20:27 2004 UTC (15 years, 1 month ago) by deepayan
fixed problem in image method when not all rows and columns had at least one entry

Revision 247 - Directory Listing
Modified Mon Jul 12 17:41:57 2004 UTC (15 years, 3 months ago) by bates
Combine ssclme_coef and ssclme_coefUnc, ssclme_coefGets and ssclme_coefGetsUnc.  Reorganize gradient code in preparation for Hessian calculations.

Revision 241 - Directory Listing
Modified Wed Jul 7 18:23:11 2004 UTC (15 years, 3 months ago) by bates
Remove pdMat classes

Revision 202 - Directory Listing
Modified Tue Jun 1 19:38:39 2004 UTC (15 years, 4 months ago) by bates
Be more careful in calls to require

Revision 159 - Directory Listing
Modified Sun May 9 22:06:53 2004 UTC (15 years, 5 months ago) by bates
Remove storage of L-inverse

Revision 92 - Directory Listing
Modified Fri Apr 16 21:18:59 2004 UTC (15 years, 6 months ago) by bates
Watch methods and exports

Revision 73 - Directory Listing
Modified Tue Apr 13 15:53:38 2004 UTC (15 years, 6 months ago) by bates
R version of fill-reducing permutation

Revision 72 - Directory Listing
Modified Mon Apr 12 22:25:55 2004 UTC (15 years, 6 months ago) by bates
added R version of groupedPerm function, corrected sscCrosstab arguments

Revision 70 - Directory Listing
Modified Mon Apr 12 12:10:01 2004 UTC (15 years, 6 months ago) by bates
Adding coercions - fixing bugs

Revision 42 - Directory Listing
Modified Tue Mar 30 23:25:17 2004 UTC (15 years, 6 months ago) by bates
image method using lattice

Revision 41 - Directory Listing
Modified Tue Mar 30 23:23:53 2004 UTC (15 years, 6 months ago) by bates
Move image method here

Revision 40 - Directory Listing
Modified Tue Mar 30 23:21:34 2004 UTC (15 years, 6 months ago) by bates
Change coersions to R code only

Revision 18 - Directory Listing
Modified Tue Mar 23 23:29:32 2004 UTC (15 years, 6 months ago) by bates
Allow unconstrained coefficients

Revision 17 - Directory Listing
Modified Tue Mar 23 23:28:51 2004 UTC (15 years, 6 months ago) by bates
Cleaning up

Revision 14 - Directory Listing
Modified Tue Mar 23 13:16:47 2004 UTC (15 years, 6 months ago) by bates
initial version

Revision 13 - Directory Listing
Modified Tue Mar 23 13:16:19 2004 UTC (15 years, 6 months ago) by bates
Add diag slot to tscMatrix

Revision 10 - Directory Listing
Added Mon Mar 22 20:20:05 2004 UTC (15 years, 6 months ago) by bates
Initial import

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