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Revision 2048 - Directory Listing
Modified Tue Aug 14 15:09:10 2007 UTC (12 years, 2 months ago) by maechler
new nearPD() {from Jens` nearcor()}; some TODO cleanup

Revision 2043 - Directory Listing
Modified Sat Aug 11 03:18:26 2007 UTC (12 years, 2 months ago) by maechler
image() new defaults + docs; misc

Revision 2039 - Directory Listing
Modified Mon Aug 6 18:49:27 2007 UTC (12 years, 2 months ago) by maechler
solve, %*% etc and correct test

Revision 2036 - Directory Listing
Modified Mon Aug 6 12:03:47 2007 UTC (12 years, 2 months ago) by maechler
add more x

Revision 2024 - Directory Listing
Modified Thu Aug 2 07:22:44 2007 UTC (12 years, 2 months ago) by maechler
release date

Revision 2018 - Directory Listing
Modified Wed Aug 1 15:22:05 2007 UTC (12 years, 2 months ago) by maechler
fix <dge> %*% <dtr> + misc.cosmetics

Revision 2015 - Directory Listing
Modified Wed Jul 25 14:17:24 2007 UTC (12 years, 2 months ago) by maechler
(mostly) patches from Brian re potential changes in R-devel

Revision 2011 - Directory Listing
Modified Fri Jul 20 12:56:10 2007 UTC (12 years, 2 months ago) by maechler
fix for "Math2" digits="missing"

Revision 2005 - Directory Listing
Modified Wed Jul 18 14:46:20 2007 UTC (12 years, 3 months ago) by maechler
norm() for sparse; systematic checking of norm() and all "Summary" methods

Revision 1968 - Directory Listing
Modified Sat Jul 7 22:49:12 2007 UTC (12 years, 3 months ago) by maechler
Rsparse validation methods; finally make use of slot_dup() macro; fix R_to_C (symmetric)

Revision 1967 - Directory Listing
Modified Sat Jul 7 22:47:52 2007 UTC (12 years, 3 months ago) by maechler
require 2.5.1

Revision 1962 - Directory Listing
Modified Sat Jul 7 18:23:28 2007 UTC (12 years, 3 months ago) by bates
Slots already in RsparseMatrix were redefined in lgRMatrix

Revision 1947 - Directory Listing
Modified Thu Jul 5 08:22:00 2007 UTC (12 years, 3 months ago) by maechler
printSpMatrix() {exported, extended, documented}

Revision 1945 - Directory Listing
Modified Wed Jul 4 18:07:07 2007 UTC (12 years, 3 months ago) by maechler
not dropping dimnames (notably of sparse matrices)

Revision 1932 - Directory Listing
Modified Fri Jun 29 16:43:47 2007 UTC (12 years, 3 months ago) by maechler
Math/Math2: setGeneric adaption for todays` R-devel

Revision 1922 - Directory Listing
Modified Sat Jun 23 18:08:48 2007 UTC (12 years, 3 months ago) by maechler
xsparseVector etc (smarter coercions)

Revision 1911 - Directory Listing
Modified Tue Jun 19 16:16:58 2007 UTC (12 years, 4 months ago) by maechler
colSums, ... rowMeans for all Matrices; notably sparse ones via [diln]gCMatrix_colSums C code

Revision 1905 - Directory Listing
Modified Sat Jun 16 18:37:48 2007 UTC (12 years, 4 months ago) by maechler
misc. cleanup

Revision 1904 - Directory Listing
Modified Sat Jun 16 18:34:05 2007 UTC (12 years, 4 months ago) by maechler
kronecker buglet fix

Revision 1903 - Directory Listing
Modified Sat Jun 16 18:31:51 2007 UTC (12 years, 4 months ago) by maechler
+ print(<sparse>, extra args)

Revision 1901 - Directory Listing
Modified Sat Jun 16 15:52:56 2007 UTC (12 years, 4 months ago) by bates
added dgCMatrix_colSums for [col,row][Sums,Means]

Revision 1898 - Directory Listing
Modified Fri Jun 15 23:13:43 2007 UTC (12 years, 4 months ago) by bates
Don't need an interactions class.  Use the row names to store the levels - duh

Revision 1896 - Directory Listing
Modified Fri Jun 15 18:20:26 2007 UTC (12 years, 4 months ago) by bates
draft "indicators" class

Revision 1895 - Directory Listing
Modified Fri Jun 15 18:19:23 2007 UTC (12 years, 4 months ago) by bates
added lm.fit.sparse (unexported), coercion of "factor" to dgCMatrix and dgCMatrix_cholsol

Revision 1887 - Directory Listing
Modified Thu Jun 7 09:04:34 2007 UTC (12 years, 4 months ago) by maechler
few misc.

Revision 1886 - Directory Listing
Modified Thu Jun 7 09:03:40 2007 UTC (12 years, 4 months ago) by maechler
another callGeneric fix

Revision 1885 - Directory Listing
Modified Thu Jun 7 08:54:16 2007 UTC (12 years, 4 months ago) by maechler
+ another kronecker method [against infinite recursion]

Revision 1883 - Directory Listing
Modified Wed Jun 6 14:24:58 2007 UTC (12 years, 4 months ago) by maechler
use correct "na.rm" default in all() and any(); tests for that

Revision 1870 - Directory Listing
Modified Tue Jun 5 16:28:55 2007 UTC (12 years, 4 months ago) by maechler
give message on suppressed column names

Revision 1855 - Directory Listing
Modified Wed May 23 21:33:34 2007 UTC (12 years, 4 months ago) by maechler
export drop0() {name is open for discussion}; document colSums

Revision 1852 - Directory Listing
Modified Mon May 21 16:42:35 2007 UTC (12 years, 4 months ago) by maechler
sparseVector. <- v; rowSums/colSums; summary(<sparse>); spMatrix(.) utility

Revision 1845 - Directory Listing
Modified Wed May 16 21:24:41 2007 UTC (12 years, 5 months ago) by maechler
part of sparseVector additions; in order to avoid merge conflicts

Revision 1844 - Directory Listing
Modified Wed May 16 20:40:34 2007 UTC (12 years, 5 months ago) by bates
Added solve methods for CHMfactor class

Revision 1834 - Directory Listing
Modified Fri May 11 10:07:17 2007 UTC (12 years, 5 months ago) by maechler
fixed symmetric Tsparse indexing

Revision 1833 - Directory Listing
Modified Tue May 8 12:25:57 2007 UTC (12 years, 5 months ago) by maechler
fix duplicated subassigment: A[c(1,2,1),3] <- ..

Revision 1832 - Directory Listing
Modified Tue May 1 10:18:27 2007 UTC (12 years, 5 months ago) by maechler
for "!" use (x) for R >= 2.6.0, and (e1) otherwise;
 replace "1:1" by "1L" since we now require R >= 2.5.0

Revision 1829 - Directory Listing
Modified Thu Apr 26 06:35:20 2007 UTC (12 years, 5 months ago) by maechler
update; mostly for ("[", Tsparse..)"

Revision 1825 - Directory Listing
Modified Thu Apr 12 13:21:51 2007 UTC (12 years, 6 months ago) by maechler
kronecker() rationalization; more setAs(), notably to virtual classes and tT <-> gT

Revision 1805 - Directory Listing
Modified Tue Mar 27 16:46:03 2007 UTC (12 years, 6 months ago) by maechler
other part of move to kronecker.R

Revision 1804 - Directory Listing
Modified Tue Mar 27 16:44:46 2007 UTC (12 years, 6 months ago) by maechler
omit cbind/rbind again, and use cBind/rBind only

Revision 1803 - Directory Listing
Modified Tue Mar 27 16:43:22 2007 UTC (12 years, 6 months ago) by maechler
move kronecker() methods to one place; goal (not yet!): become much faster

Revision 1799 - Directory Listing
Modified Sat Mar 24 14:54:00 2007 UTC (12 years, 6 months ago) by maechler
+ diff(.), + "dim<-";  cBind/rBind + cbind/rbind; indexing fixes - current state

Revision 1786 - Directory Listing
Modified Fri Feb 16 17:37:56 2007 UTC (12 years, 8 months ago) by bates
Add image method for CHMfactor class

Revision 1767 - Directory Listing
Modified Mon Feb 5 16:53:17 2007 UTC (12 years, 8 months ago) by maechler
eliminate infinite loop in coercions to [ln]sparseMatrix

Revision 1766 - Directory Listing
Modified Mon Feb 5 16:35:49 2007 UTC (12 years, 8 months ago) by maechler
port Doug`s fix to R_to_CMatrix and reactivate .Call()s

Revision 1765 - Directory Listing
Modified Mon Feb 5 16:32:04 2007 UTC (12 years, 8 months ago) by maechler
more Matrix <-> SparseM

Revision 1764 - Directory Listing
Modified Mon Feb 5 08:14:19 2007 UTC (12 years, 8 months ago) by maechler
use .T.2.C and properly fix last change for tril/triu/band {not using as_Csparse}

Revision 1760 - Directory Listing
Modified Sat Feb 3 21:13:22 2007 UTC (12 years, 8 months ago) by maechler
Rsparse coercions now all via R-level "workaround"; to and from  *virtual* rather than specific classes

Revision 1759 - Directory Listing
Modified Sat Feb 3 21:07:00 2007 UTC (12 years, 8 months ago) by maechler
typo

Revision 1758 - Directory Listing
Modified Sat Feb 3 16:34:51 2007 UTC (12 years, 8 months ago) by maechler
workaround platform-dependent segfault in R_to_CMatrix

Revision 1751 - Directory Listing
Modified Tue Jan 30 17:41:02 2007 UTC (12 years, 8 months ago) by maechler
drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R

Revision 1748 - Directory Listing
Modified Mon Jan 29 20:48:26 2007 UTC (12 years, 8 months ago) by maechler
solve(<diagMatrix>)

Revision 1747 - Directory Listing
Modified Mon Jan 29 20:17:33 2007 UTC (12 years, 8 months ago) by maechler
many more coercions for diag(), "!", etc; see ChangeLog

Revision 1738 - Directory Listing
Modified Tue Jan 23 17:17:15 2007 UTC (12 years, 8 months ago) by maechler
nnzero(), length(), "Ops" & "Logic", many more setAs(); misc.fixes

Revision 1737 - Directory Listing
Modified Tue Jan 23 17:14:20 2007 UTC (12 years, 8 months ago) by maechler
much faster "fancy" adjust in show()

Revision 1735 - Directory Listing
Modified Tue Jan 23 17:07:37 2007 UTC (12 years, 8 months ago) by maechler
mv gt2tT() to Auxiliaries, and extend it

Revision 1734 - Directory Listing
Modified Tue Jan 23 16:05:53 2007 UTC (12 years, 8 months ago) by maechler
moved ( + extended) dgRMatrix.R to Rsparse.R

Revision 1731 - Directory Listing
Modified Thu Jan 18 13:56:55 2007 UTC (12 years, 9 months ago) by maechler
autogenerate coercions (unfinished non-activated idea)

Revision 1725 - Directory Listing
Modified Wed Jan 17 08:01:10 2007 UTC (12 years, 9 months ago) by maechler
accomplished quite a few small FIXMEs; see ChangeLog

Revision 1724 - Directory Listing
Modified Sat Jan 13 21:06:51 2007 UTC (12 years, 9 months ago) by maechler
indexing etc till yesterday

Revision 1718 - Directory Listing
Modified Sat Jan 6 10:54:53 2007 UTC (12 years, 9 months ago) by maechler
add "..." to as.matrix()

Revision 1714 - Directory Listing
Modified Thu Dec 28 22:11:32 2006 UTC (12 years, 9 months ago) by maechler
move Ops to new Ops.R; start using "Logic"

Revision 1713 - Directory Listing
Modified Thu Dec 28 22:11:08 2006 UTC (12 years, 9 months ago) by maechler
as(*, nMatrix)

Revision 1710 - Directory Listing
Modified Tue Dec 26 15:57:06 2006 UTC (12 years, 9 months ago) by maechler
more "[<-" fixes; validity of triangular sparse

Revision 1708 - Directory Listing
Modified Fri Dec 22 19:53:37 2006 UTC (12 years, 9 months ago) by maechler
rbind2() / cbind2() methods fixes + new Auxiliaries

Revision 1707 - Directory Listing
Modified Thu Dec 21 08:03:05 2006 UTC (12 years, 9 months ago) by maechler
fix last (? ha!) indexing bug; cbind2/rbind2

Revision 1705 - Directory Listing
Modified Sat Dec 16 12:37:25 2006 UTC (12 years, 10 months ago) by maechler
any(), all() and "Compare"(<sparse>) - for release of 0.9975-7

Revision 1696 - Directory Listing
Modified Mon Dec 11 21:41:37 2006 UTC (12 years, 10 months ago) by maechler
fix symmetric-sparse-indexing bug

Revision 1682 - Directory Listing
Modified Fri Dec 1 18:42:40 2006 UTC (12 years, 10 months ago) by maechler
"fix" ddi %*% dgC dispatch

Revision 1673 - Directory Listing
Modified Mon Nov 6 20:54:26 2006 UTC (12 years, 11 months ago) by maechler
host of changes; mostly indexing(sub-set & -assign) for symmetric and [ cbind(i,j) ]

Revision 1665 - Directory Listing
Modified Fri Nov 3 23:18:07 2006 UTC (12 years, 11 months ago) by maechler
fully-sparse solve() for dsC; indexing & comparison fixes

Revision 1661 - Directory Listing
Modified Thu Nov 2 13:10:50 2006 UTC (12 years, 11 months ago) by maechler
2nd round of cleanup for <sparse>_validate()

Revision 1660 - Directory Listing
Modified Thu Nov 2 11:05:35 2006 UTC (12 years, 11 months ago) by maechler
tcrossprod(<Csp>, <Csp>); dimnames for [t]crossprod; validity now ensures correct length(Dimnames[[j]])

Revision 1659 - Directory Listing
Modified Wed Nov 1 17:50:15 2006 UTC (12 years, 11 months ago) by maechler
extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

Revision 1657 - Directory Listing
Modified Wed Nov 1 16:29:53 2006 UTC (12 years, 11 months ago) by bates
crossprod(<CsparseMatrix>,<CsparseMatrix>) added

Revision 1655 - Directory Listing
Modified Mon Oct 30 17:16:27 2006 UTC (12 years, 11 months ago) by maechler
another set of fixes/improvements; the last prompted by Harri Kiiveri

Revision 1654 - Directory Listing
Modified Fri Oct 27 16:58:15 2006 UTC (12 years, 11 months ago) by maechler
miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

Revision 1642 - Directory Listing
Modified Fri Oct 20 21:08:28 2006 UTC (12 years, 11 months ago) by maechler
small changes related to "corMatrix" and other newly seen classes in tests/Class+Meth.R

Revision 1635 - Directory Listing
Modified Tue Oct 17 21:21:44 2006 UTC (13 years ago) by maechler
fix Matrix() %*% Diagonal() bug

Revision 1620 - Directory Listing
Modified Sat Oct 7 12:48:05 2006 UTC (13 years ago) by bates
deprecate writeHB in favor of writeMM

Revision 1619 - Directory Listing
Modified Fri Oct 6 21:29:15 2006 UTC (13 years ago) by maechler
use Csparse_drop at least once

Revision 1618 - Directory Listing
Modified Fri Oct 6 15:44:01 2006 UTC (13 years ago) by maechler
Matrix(0, d,d) should also give sparse (not diagonal); general_to_symmetric; notably for lsC*; more coercions; first cut at Csparse_drop()

Revision 1617 - Directory Listing
Modified Fri Oct 6 15:42:12 2006 UTC (13 years ago) by maechler
sub-assign to diagonal => sparse; + new bdiag() function

Revision 1615 - Directory Listing
Modified Thu Oct 5 16:30:46 2006 UTC (13 years ago) by maechler
M[i,j] <- <Matrix>

Revision 1604 - Directory Listing
Modified Fri Sep 29 15:17:24 2006 UTC (13 years ago) by maechler
fix wrong "\" found by latest R-devel

Revision 1600 - Directory Listing
Modified Fri Sep 29 13:37:25 2006 UTC (13 years ago) by maechler
fix a "subassign" case; less FIXME

Revision 1599 - Directory Listing
Modified Fri Sep 29 09:39:50 2006 UTC (13 years ago) by maechler
more coercion methods (for rare matrices)  => less exceptions

Revision 1592 - Directory Listing
Modified Thu Sep 28 15:31:17 2006 UTC (13 years ago) by maechler
"Compare" for "dMatrix"; plus a few small ones

Revision 1577 - Directory Listing
Modified Mon Sep 18 21:01:45 2006 UTC (13 years, 1 month ago) by bates
Handle [t]crossprod of symmetric, sparse matrices in R code

Revision 1576 - Directory Listing
Modified Mon Sep 18 15:30:37 2006 UTC (13 years, 1 month ago) by maechler
small update

Revision 1575 - Directory Listing
Modified Mon Sep 18 14:47:40 2006 UTC (13 years, 1 month ago) by maechler
check 'x' slot in l.CMatrix_validate

Revision 1572 - Directory Listing
Modified Sat Sep 16 22:06:45 2006 UTC (13 years, 1 month ago) by maechler
printing of NA in sparse logic Matrices

Revision 1571 - Directory Listing
Modified Sat Sep 16 21:03:12 2006 UTC (13 years, 1 month ago) by maechler
several small fixes + more tests for "lMatrix" classes; "Compare"; "chol"

Revision 1570 - Directory Listing
Modified Sat Sep 16 16:23:49 2006 UTC (13 years, 1 month ago) by maechler
rename lcsc_to_matrix to ncsc_* and write new lcsc_*()

Revision 1569 - Directory Listing
Modified Sat Sep 16 16:00:06 2006 UTC (13 years, 1 month ago) by maechler
get rid of as.Matrix() and helper function
which were never finished, never used, never exported

Revision 1565 - Directory Listing
Modified Fri Sep 15 14:02:48 2006 UTC (13 years, 1 month ago) by maechler
Matrix <-> graph coercion update (for R 2.4.0)

Revision 1556 - Directory Listing
Modified Wed Sep 13 15:26:25 2006 UTC (13 years, 1 month ago) by bates
Apply the validity method we defined

Revision 1551 - Directory Listing
Modified Tue Sep 12 16:39:13 2006 UTC (13 years, 1 month ago) by maechler
1st fix at "Compare"; other small fixes

Revision 1548 - Directory Listing
Modified Mon Sep 11 22:13:07 2006 UTC (13 years, 1 month ago) by maechler
new nMatrix and subclasses; lsparse change to have x slot; many consequences

Revision 1545 - Directory Listing
Modified Sat Sep 9 21:50:14 2006 UTC (13 years, 1 month ago) by bates
Cleanup

Revision 1542 - Directory Listing
Modified Sat Sep 9 12:05:46 2006 UTC (13 years, 1 month ago) by maechler
do not define tcrossprod(<matrix>); not yet "graph::"

Revision 1538 - Directory Listing
Modified Fri Sep 8 13:18:50 2006 UTC (13 years, 1 month ago) by bates
Update description after removal of Metis et al.

Revision 1513 - Directory Listing
Modified Tue Sep 5 13:16:23 2006 UTC (13 years, 1 month ago) by maechler
re-add head() and tail() to exported methods

Revision 1507 - Directory Listing
Modified Mon Sep 4 18:41:34 2006 UTC (13 years, 1 month ago) by bates
Merging changes from Matrix-nolmer branch

Revision 1479 - Directory Listing
Modified Fri Sep 1 23:17:59 2006 UTC (13 years, 1 month ago) by bates
What was I thinking?  I checked in files without running R CMD check and adding documentation for methods.  Now fixed.

Revision 1476 - Directory Listing
Modified Fri Sep 1 22:49:10 2006 UTC (13 years, 1 month ago) by bates
Remove redundant method.

Revision 1474 - Directory Listing
Modified Fri Sep 1 22:35:29 2006 UTC (13 years, 1 month ago) by bates
Added direct method to CsparseMatrix from graphNEL

Revision 1472 - Directory Listing
Modified Fri Sep 1 15:31:04 2006 UTC (13 years, 1 month ago) by maechler
miscellaneous tweaks; moved some method definitions higher up

Revision 1467 - Directory Listing
Modified Wed Aug 30 21:35:09 2006 UTC (13 years, 1 month ago) by maechler
several smallish fixes

Revision 1463 - Directory Listing
Modified Tue Aug 29 22:30:57 2006 UTC (13 years, 1 month ago) by bates
Promotion of %*% and solve to RHS of ddenseMatrix

Revision 1462 - Directory Listing
Modified Tue Aug 29 16:34:49 2006 UTC (13 years, 1 month ago) by bates
Generalize %*% methods for sparse matrices

Revision 1460 - Directory Listing
Modified Tue Aug 29 14:07:52 2006 UTC (13 years, 1 month ago) by bates
Promote %*% methods to ddenseMatrix class

Revision 1459 - Directory Listing
Modified Tue Aug 29 07:18:18 2006 UTC (13 years, 1 month ago) by maechler
cosmetic change in show()

Revision 1456 - Directory Listing
Modified Mon Aug 28 15:36:16 2006 UTC (13 years, 1 month ago) by maechler
Arith( dMatrix, dMatrix)

Revision 1455 - Directory Listing
Modified Mon Aug 28 15:35:44 2006 UTC (13 years, 1 month ago) by maechler
Matrix(*, forceCheck)

Revision 1453 - Directory Listing
Modified Sun Aug 27 16:16:35 2006 UTC (13 years, 1 month ago) by bates
Added triu, tril and band for ddenseMatrix objects.

Revision 1452 - Directory Listing
Modified Sat Aug 26 18:24:13 2006 UTC (13 years, 1 month ago) by maechler
tril,triu,band: triangular only if "square"

Revision 1450 - Directory Listing
Modified Sat Aug 26 13:01:22 2006 UTC (13 years, 1 month ago) by bates
Direct call to dup_mMatrix_as_dgeMatrix

Revision 1448 - Directory Listing
Modified Sat Aug 26 03:29:36 2006 UTC (13 years, 1 month ago) by bates
Move methods to the CsparseMatrix class

Revision 1447 - Directory Listing
Modified Fri Aug 25 20:38:36 2006 UTC (13 years, 1 month ago) by maechler
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

Revision 1445 - Directory Listing
Modified Fri Aug 25 14:54:54 2006 UTC (13 years, 1 month ago) by bates
Bug fix due to Emmanuel Tillard

Revision 1444 - Directory Listing
Modified Fri Aug 25 14:39:45 2006 UTC (13 years, 1 month ago) by maechler
a bit more "MatrixFactorization" ..

Revision 1443 - Directory Listing
Modified Fri Aug 25 10:44:48 2006 UTC (13 years, 1 month ago) by maechler
1st stab at "MatrixFactorization" class; exporting CHMfactor etc

Revision 1436 - Directory Listing
Modified Thu Aug 24 18:22:39 2006 UTC (13 years, 1 month ago) by bates
Use dup_mMatrix_as_dgeMatrix

Revision 1435 - Directory Listing
Modified Thu Aug 24 18:20:36 2006 UTC (13 years, 1 month ago) by bates
Replaced by CHOLMOD functions

Revision 1432 - Directory Listing
Modified Thu Aug 24 16:21:18 2006 UTC (13 years, 1 month ago) by maechler
eliminate classed argument from dup_mM*() and dependencies

Revision 1429 - Directory Listing
Modified Wed Aug 23 22:12:52 2006 UTC (13 years, 1 month ago) by bates
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

Revision 1428 - Directory Listing
Modified Wed Aug 23 21:32:30 2006 UTC (13 years, 1 month ago) by bates
Disable chol methods for lsCMatrix class temporarily; Comment out old code in src/lsCMatrix.[ch]

Revision 1427 - Directory Listing
Modified Wed Aug 23 21:29:22 2006 UTC (13 years, 1 month ago) by bates
Add Cholesky generic and method for dsCMatrix.  Use CHOLMOD for chol().

Revision 1425 - Directory Listing
Modified Wed Aug 23 21:25:32 2006 UTC (13 years, 1 month ago) by bates
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

Revision 1422 - Directory Listing
Modified Tue Aug 22 22:51:23 2006 UTC (13 years, 1 month ago) by bates
Replace ssc_transpose call

Revision 1407 - Directory Listing
Modified Mon Aug 21 15:24:47 2006 UTC (13 years, 1 month ago) by maechler
rename class "LU" to "denseLU" and make "LU" virtual

Revision 1402 - Directory Listing
Modified Sun Aug 20 16:15:38 2006 UTC (13 years, 1 month ago) by bates
Return correct # of coefs; fix cut-and-paste errors

Revision 1396 - Directory Listing
Modified Sun Aug 20 03:17:19 2006 UTC (13 years, 1 month ago) by bates
Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted

Revision 1391 - Directory Listing
Modified Fri Aug 18 15:42:24 2006 UTC (13 years, 2 months ago) by maechler
small update; extend LU-class example

Revision 1390 - Directory Listing
Modified Fri Aug 18 15:41:36 2006 UTC (13 years, 2 months ago) by maechler
fix last fix

Revision 1389 - Directory Listing
Modified Fri Aug 18 13:53:33 2006 UTC (13 years, 2 months ago) by maechler
export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse

Revision 1387 - Directory Listing
Modified Thu Aug 17 22:31:34 2006 UTC (13 years, 2 months ago) by bates
Use C code for diagU2N in CsparseMatrix classes

Revision 1385 - Directory Listing
Modified Thu Aug 17 22:30:01 2006 UTC (13 years, 2 months ago) by bates
Added solve methods for dgCMatrix and documentation

Revision 1383 - Directory Listing
Modified Thu Aug 17 13:57:53 2006 UTC (13 years, 2 months ago) by bates
add sparse LU and QR decompositions

Revision 1380 - Directory Listing
Modified Tue Aug 15 22:31:30 2006 UTC (13 years, 2 months ago) by bates
Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

Revision 1376 - Directory Listing
Modified Tue Aug 15 18:22:54 2006 UTC (13 years, 2 months ago) by maechler
use Csparse_to_logical

Revision 1375 - Directory Listing
Modified Tue Aug 15 18:21:49 2006 UTC (13 years, 2 months ago) by maechler
eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general

Revision 1374 - Directory Listing
Modified Tue Aug 15 18:17:44 2006 UTC (13 years, 2 months ago) by maechler
fix replCmat, using new C Csparse_symmetric_to_general

Revision 1372 - Directory Listing
Modified Mon Aug 14 21:10:16 2006 UTC (13 years, 2 months ago) by bates
Consolidate general coercion methods in Csparse.R

Revision 1369 - Directory Listing
Modified Mon Aug 14 18:54:04 2006 UTC (13 years, 2 months ago) by bates
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

Revision 1367 - Directory Listing
Modified Sat Aug 12 17:33:07 2006 UTC (13 years, 2 months ago) by bates
Generalize conversions

Revision 1366 - Directory Listing
Modified Sat Aug 12 17:31:39 2006 UTC (13 years, 2 months ago) by bates
Generalize conversions

Revision 1360 - Directory Listing
Modified Tue Aug 8 17:29:03 2006 UTC (13 years, 2 months ago) by bates
crossprod and tcrossprod for TsparseMatrix

Revision 1357 - Directory Listing
Modified Tue Aug 8 16:26:38 2006 UTC (13 years, 2 months ago) by maechler
.is.diagonal() and as_geClass() fixes

Revision 1352 - Directory Listing
Modified Mon Aug 7 18:31:12 2006 UTC (13 years, 2 months ago) by bates
Set stype in C function Csparse_crossprod and avoid R-level conversions

Revision 1351 - Directory Listing
Modified Mon Aug 7 16:51:14 2006 UTC (13 years, 2 months ago) by maechler
use speedier crossprod() for "dgC" - still slower than t(.) %*% .

Revision 1349 - Directory Listing
Modified Mon Aug 7 09:05:42 2006 UTC (13 years, 2 months ago) by maechler
tril() etc also for T* and Rsparse

Revision 1348 - Directory Listing
Modified Mon Aug 7 09:05:00 2006 UTC (13 years, 2 months ago) by maechler
sparse -> graph fix

Revision 1347 - Directory Listing
Modified Mon Aug 7 08:47:43 2006 UTC (13 years, 2 months ago) by maechler
use utils:::tail.matrix directly

Revision 1343 - Directory Listing
Modified Wed Aug 2 20:43:52 2006 UTC (13 years, 2 months ago) by maechler
 + factorNames2char() utility for nicer warnings

Revision 1342 - Directory Listing
Modified Tue Aug 1 20:26:45 2006 UTC (13 years, 2 months ago) by bates
hatTrace and warnings about boundary convergence

Revision 1336 - Directory Listing
Modified Mon Jul 31 23:05:04 2006 UTC (13 years, 2 months ago) by bates
Add hatTrace function

Revision 1335 - Directory Listing
Modified Mon Jul 31 12:11:35 2006 UTC (13 years, 2 months ago) by maechler
change unused class "correlation" to "corMatrix"

Revision 1333 - Directory Listing
Modified Mon Jul 31 08:32:50 2006 UTC (13 years, 2 months ago) by maechler
cleanup

Revision 1332 - Directory Listing
Modified Thu Jul 27 13:42:18 2006 UTC (13 years, 2 months ago) by maechler
more dgRMatrix coercions (5 days ago)

Revision 1331 - Directory Listing
Modified Sat Jul 22 17:59:53 2006 UTC (13 years, 2 months ago) by maechler
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

Revision 1330 - Directory Listing
Modified Fri Jul 21 08:28:18 2006 UTC (13 years, 2 months ago) by maechler
pass verbose argument to (gl)mer_MCMCsamp() and use it in C code

Revision 1329 - Directory Listing
Modified Fri Jul 21 06:47:06 2006 UTC (13 years, 2 months ago) by maechler
miscellaneous mostly related to sparse indexing

Revision 1327 - Directory Listing
Modified Fri Jul 21 06:43:31 2006 UTC (13 years, 2 months ago) by maechler
add some SparseM <-> Matrix conversions

Revision 1326 - Directory Listing
Modified Wed Jul 19 14:58:26 2006 UTC (13 years, 3 months ago) by bates
head and tail methods and reminder in TODO of classes after subscripting

Revision 1323 - Directory Listing
Modified Mon Jul 17 18:34:45 2006 UTC (13 years, 3 months ago) by bates
Add coersion from CHMfactor to sparseMatrix

Revision 1321 - Directory Listing
Modified Mon Jul 17 18:29:48 2006 UTC (13 years, 3 months ago) by bates
Remove leading blanks in a string.  They are being tabified and result in incorrect alignment

Revision 1320 - Directory Listing
Modified Mon Jul 17 17:14:33 2006 UTC (13 years, 3 months ago) by bates
Added a "To Do" about always printing the log-likelihood and the restricted-log-likelihood for an lmer object.

Revision 1319 - Directory Listing
Modified Mon Jul 17 13:08:04 2006 UTC (13 years, 3 months ago) by maechler
non0ind() extended for symmetric sparse matrices -> correct printing

Revision 1315 - Directory Listing
Modified Mon Jul 10 16:08:05 2006 UTC (13 years, 3 months ago) by maechler
miscellaneous small things, including extended tests; see also ChangeLog

Revision 1314 - Directory Listing
Modified Mon Jul 10 15:23:48 2006 UTC (13 years, 3 months ago) by maechler
add lgCMatrix_diag()

Revision 1306 - Directory Listing
Modified Thu Jul 6 15:14:12 2006 UTC (13 years, 3 months ago) by bates
Establish new class glmer; modify validity check on pedigree to account for nonparallel patterns of missingness in parents

Revision 1305 - Directory Listing
Modified Sat Jul 1 16:18:39 2006 UTC (13 years, 3 months ago) by maechler
coercion pMatrix -> Tsparse

Revision 1303 - Directory Listing
Modified Mon Jun 26 14:33:16 2006 UTC (13 years, 3 months ago) by bates
Correction in deviance method for mer objects; some cleanup

Revision 1302 - Directory Listing
Modified Mon Jun 19 15:36:44 2006 UTC (13 years, 4 months ago) by maechler
fix segfault from wrong formula

Revision 1301 - Directory Listing
Modified Mon Jun 12 10:52:45 2006 UTC (13 years, 4 months ago) by bates
Corrected naming of columns of an mcmcsamp object

Revision 1299 - Directory Listing
Modified Mon Jun 12 08:06:21 2006 UTC (13 years, 4 months ago) by maechler
mcmcsamp()[,"deviance"] was wrong column

Revision 1297 - Directory Listing
Modified Sat Jun 10 19:54:41 2006 UTC (13 years, 4 months ago) by bates
added simulestimate for lmer but hidden in NAMESPACE

Revision 1295 - Directory Listing
Modified Fri Jun 9 21:47:22 2006 UTC (13 years, 4 months ago) by maechler
coercion to and multiplication of diagonal and sparse matrices

Revision 1293 - Directory Listing
Modified Thu Jun 8 16:05:41 2006 UTC (13 years, 4 months ago) by bates
No longer create a generic for qqmath; add deviance to mcmcsamp

Revision 1292 - Directory Listing
Modified Thu Jun 8 16:04:50 2006 UTC (13 years, 4 months ago) by bates
No longer create a generic for qqmath

Revision 1290 - Directory Listing
Modified Thu Jun 8 09:30:21 2006 UTC (13 years, 4 months ago) by maechler
implemented all 4 of {rowSums(), ... colMeans()}

Revision 1289 - Directory Listing
Modified Tue Jun 6 14:48:37 2006 UTC (13 years, 4 months ago) by maechler
R >= 2.4 needs more hacking for base::as.matrix assignment

Revision 1288 - Directory Listing
Modified Thu Jun 1 20:41:20 2006 UTC (13 years, 4 months ago) by bates
add reference line and grid to qqmath method for ranef.lmer

Revision 1286 - Directory Listing
Modified Tue May 30 16:00:35 2006 UTC (13 years, 4 months ago) by bates
Functions to allow nested grouping factors to be specified as (1|foo/bar)

Revision 1285 - Directory Listing
Modified Sat May 27 20:12:08 2006 UTC (13 years, 4 months ago) by maechler
a few small changes, comments - on the way to get to a better "Compare" (group method) approach

Revision 1284 - Directory Listing
Modified Sat May 27 20:01:11 2006 UTC (13 years, 4 months ago) by bates
More careful checks in subbars and friends, code for calculating inbreeding coefficients directly from the pedigree

Revision 1283 - Directory Listing
Modified Sat May 27 19:51:01 2006 UTC (13 years, 4 months ago) by bates
Add isNested and for an identity permutation for nested grouping factors

Revision 1282 - Directory Listing
Modified Wed May 24 17:00:12 2006 UTC (13 years, 4 months ago) by maechler
eliminate a few old "FIXME"s (and add a new one :-)

Revision 1280 - Directory Listing
Modified Tue May 23 08:01:44 2006 UTC (13 years, 4 months ago) by maechler
useDynlib(*, .registration=TRUE)

Revision 1276 - Directory Listing
Modified Mon May 22 19:14:39 2006 UTC (13 years, 4 months ago) by bates
Copy colcount in CHOLMOD supernodal factorization

Revision 1274 - Directory Listing
Modified Mon May 22 18:57:35 2006 UTC (13 years, 4 months ago) by bates
Add a generic for qqmath (maybe not a good idea)

Revision 1271 - Directory Listing
Modified Thu May 18 06:47:09 2006 UTC (13 years, 5 months ago) by maechler
some  "sparse <-> graph"  updates

Revision 1270 - Directory Listing
Modified Thu May 18 06:44:43 2006 UTC (13 years, 5 months ago) by maechler
cosmetic, comments

Revision 1268 - Directory Listing
Modified Wed May 17 17:42:09 2006 UTC (13 years, 5 months ago) by bates
lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

Revision 1267 - Directory Listing
Modified Tue May 16 19:12:13 2006 UTC (13 years, 5 months ago) by bates
single argument [t]crossprod now returns a symmetric matrix

Revision 1266 - Directory Listing
Modified Tue May 16 19:11:00 2006 UTC (13 years, 5 months ago) by bates
Added check on sire and dam indices to pedigree function and class validation function

Revision 1265 - Directory Listing
Modified Mon May 15 22:36:59 2006 UTC (13 years, 5 months ago) by bates
Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

Revision 1264 - Directory Listing
Modified Mon May 15 21:05:20 2006 UTC (13 years, 5 months ago) by maechler
Tsparse indexing fix

Revision 1262 - Directory Listing
Modified Sun Apr 30 15:40:39 2006 UTC (13 years, 5 months ago) by bates
Add special solve method for unit upper triangular matrices

Revision 1261 - Directory Listing
Modified Sun Apr 30 15:39:44 2006 UTC (13 years, 5 months ago) by bates
Add chol method for pedigree objects

Revision 1259 - Directory Listing
Modified Tue Apr 25 18:42:22 2006 UTC (13 years, 5 months ago) by bates
Unit diagonal property in transpose of dtCMatrix

Revision 1258 - Directory Listing
Modified Fri Apr 21 15:44:39 2006 UTC (13 years, 5 months ago) by maechler
make pedigree class more memory-efficient; add pedigree()

Revision 1255 - Directory Listing
Modified Wed Apr 19 14:16:59 2006 UTC (13 years, 6 months ago) by bates
Remove postVar generic and methods

Revision 1253 - Directory Listing
Modified Wed Apr 19 09:17:14 2006 UTC (13 years, 6 months ago) by maechler
tT -> tC; and diagU2N() for solve(<dtC>)

Revision 1251 - Directory Listing
Modified Sat Apr 15 13:08:26 2006 UTC (13 years, 6 months ago) by bates
Add CSparse-based solve methods for dtCMatrix class

Revision 1249 - Directory Listing
Modified Sat Apr 15 12:50:20 2006 UTC (13 years, 6 months ago) by bates
modified indentation

Revision 1247 - Directory Listing
Modified Thu Apr 13 11:12:51 2006 UTC (13 years, 6 months ago) by bates
pedigree class added

Revision 1246 - Directory Listing
Modified Wed Apr 12 22:11:14 2006 UTC (13 years, 6 months ago) by bates
Initial version of methods for the pedigree class.  The most important
method is the coercion to the dtCMatrix class.

Revision 1245 - Directory Listing
Modified Wed Apr 12 20:31:18 2006 UTC (13 years, 6 months ago) by maechler
fix for <sparse> %*% <integer_matrix>

Revision 1243 - Directory Listing
Modified Sun Apr 9 00:02:26 2006 UTC (13 years, 6 months ago) by bates
Added qqmath method for ranef.lmer and postVar for ranef methods

Revision 1241 - Directory Listing
Modified Mon Apr 3 20:51:37 2006 UTC (13 years, 6 months ago) by bates
Added a qqmath method for the ranef.lmer class.

Revision 1240 - Directory Listing
Modified Sun Apr 2 23:45:47 2006 UTC (13 years, 6 months ago) by bates
Add warning about ignored arguments to coef method for lmer

Revision 1238 - Directory Listing
Modified Thu Mar 30 19:56:09 2006 UTC (13 years, 6 months ago) by maechler
coercions from dgC to triangular (dtC) and symmetric (dsC), etc

Revision 1236 - Directory Listing
Modified Thu Mar 23 15:16:17 2006 UTC (13 years, 6 months ago) by bates
Propagate DimNames in dsyMatrix_as_dspMatrix

Revision 1234 - Directory Listing
Modified Tue Mar 21 12:33:28 2006 UTC (13 years, 6 months ago) by bates
Change name of lmer.ranef class to ranef.lmer, add coef.lmer and update plot methods for these classes

Revision 1232 - Directory Listing
Modified Tue Mar 21 11:07:55 2006 UTC (13 years, 6 months ago) by bates
modifying return value of ranef method and adding residuals method

Revision 1227 - Directory Listing
Modified Wed Mar 15 17:42:03 2006 UTC (13 years, 7 months ago) by maechler
use  isPacked() [internal] instead of private class "packedMatrix"

Revision 1226 - Directory Listing
Modified Mon Mar 13 14:07:58 2006 UTC (13 years, 7 months ago) by maechler
sparse: "[<-" and better arithmetic; other tweaks

Revision 1225 - Directory Listing
Modified Mon Mar 13 14:06:17 2006 UTC (13 years, 7 months ago) by maechler
enable M[M < 10] for dense

Revision 1223 - Directory Listing
Modified Tue Mar 7 11:06:46 2006 UTC (13 years, 7 months ago) by maechler
lmer(): dropped non-sensical 'x' and 'y' arguments

Revision 1222 - Directory Listing
Modified Tue Mar 7 11:05:08 2006 UTC (13 years, 7 months ago) by maechler
lmer(): non-trivial summary() method -> summary.*mer classes

Revision 1218 - Directory Listing
Modified Mon Feb 20 22:47:20 2006 UTC (13 years, 7 months ago) by bates
Used cholmod_vertcat and cholmod_horzcat for cbind2 and rbind2 in the dsparseMatrix virtual class

Revision 1215 - Directory Listing
Modified Wed Feb 8 17:54:57 2006 UTC (13 years, 8 months ago) by maechler
add simplistic "[<-" method for dgT

Revision 1214 - Directory Listing
Modified Wed Feb 8 07:43:07 2006 UTC (13 years, 8 months ago) by maechler
require(utils) in .OnLoad()

Revision 1213 - Directory Listing
Modified Tue Feb 7 23:44:07 2006 UTC (13 years, 8 months ago) by bates
Fix case of cbind(successes, failures) for lmer fitting a GLMM (see Changelog)

Revision 1209 - Directory Listing
Modified Wed Jan 25 23:42:57 2006 UTC (13 years, 8 months ago) by bates
Use coersion for transpose of dtCMatrix class

Revision 1208 - Directory Listing
Modified Wed Jan 25 15:19:29 2006 UTC (13 years, 8 months ago) by bates
Move dtTMatrix_to_dtCMatrix to CHOLMOD code

Revision 1202 - Directory Listing
Modified Mon Jan 23 16:55:43 2006 UTC (13 years, 8 months ago) by maechler
add to tests: now also check  setAs("matrix", *)

Revision 1201 - Directory Listing
Modified Mon Jan 23 16:04:12 2006 UTC (13 years, 8 months ago) by maechler
Class cleanup; particularly ldense* ones

Revision 1198 - Directory Listing
Modified Mon Jan 23 15:01:02 2006 UTC (13 years, 8 months ago) by maechler
no 'factors' slot in l2d_Matrix / d2l_Matrix

Revision 1189 - Directory Listing
Modified Fri Jan 20 18:13:39 2006 UTC (13 years, 8 months ago) by maechler
"dsy" no longer extends "dge"; other small fixes

Revision 1188 - Directory Listing
Modified Fri Jan 20 18:12:04 2006 UTC (13 years, 8 months ago) by maechler
fix mcmcsamp(*, saveb=TRUE)

Revision 1180 - Directory Listing
Modified Thu Jan 19 00:43:37 2006 UTC (13 years, 8 months ago) by bates
Over to Martin for release 0.995-2

Revision 1178 - Directory Listing
Modified Wed Jan 18 15:38:12 2006 UTC (13 years, 9 months ago) by bates
Modifications to lmer.R - still not working

Revision 1175 - Directory Listing
Modified Tue Jan 17 23:41:36 2006 UTC (13 years, 9 months ago) by bates
Munging the data frame

Revision 1174 - Directory Listing
Modified Mon Jan 16 20:03:48 2006 UTC (13 years, 9 months ago) by maechler
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings

Revision 1171 - Directory Listing
Modified Mon Jan 16 16:59:46 2006 UTC (13 years, 9 months ago) by bates
Extract the slot contents from S4 objects, not the component

Revision 1170 - Directory Listing
Modified Mon Jan 16 16:38:00 2006 UTC (13 years, 9 months ago) by bates
Throw an error for mcmcsamp on a GLMM, at least until it is implemented

Revision 1168 - Directory Listing
Modified Mon Jan 16 14:40:39 2006 UTC (13 years, 9 months ago) by bates
Modifications to propagate column names from an mer object to a VarCorr summary

Revision 1166 - Directory Listing
Modified Sun Jan 15 19:18:20 2006 UTC (13 years, 9 months ago) by bates
modifications to lmer and related classes

Revision 1165 - Directory Listing
Modified Sat Jan 14 23:41:55 2006 UTC (13 years, 9 months ago) by maechler
new coercion to dtr* and dsy* using isSymmetric() and isTriangular(); fix validity checking; some class descriptions

Revision 1162 - Directory Listing
Modified Fri Jan 13 23:47:38 2006 UTC (13 years, 9 months ago) by bates
Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

Revision 1160 - Directory Listing
Modified Fri Jan 13 23:45:45 2006 UTC (13 years, 9 months ago) by bates
Updating the list of slots on factorable and non-factorable classes

Revision 1156 - Directory Listing
Modified Thu Jan 12 23:39:56 2006 UTC (13 years, 9 months ago) by bates
Remove redundant registration of dspMatrix_trf; incorporate wts and wrkres slots in mer class

Revision 1150 - Directory Listing
Modified Thu Jan 12 03:41:25 2006 UTC (13 years, 9 months ago) by bates
Switch to supernodal Cholesky representation of mer objects

Revision 1148 - Directory Listing
Modified Thu Jan 12 03:37:40 2006 UTC (13 years, 9 months ago) by bates
Incorporation of correlation class

Revision 1147 - Directory Listing
Modified Thu Jan 12 03:36:53 2006 UTC (13 years, 9 months ago) by bates
Removal of dgBCMatrix class and coercion function

Revision 1145 - Directory Listing
Modified Thu Jan 12 03:26:06 2006 UTC (13 years, 9 months ago) by bates
Remove dgBCMatrix.[ch] and dependencies

Revision 1127 - Directory Listing
Modified Tue Jan 10 18:11:23 2006 UTC (13 years, 9 months ago) by maechler
add ", drop = FALSE" in lmer.coef constructions; plus a few comments

Revision 1123 - Directory Listing
Modified Tue Jan 10 17:04:29 2006 UTC (13 years, 9 months ago) by bates
Release 0.99-6

Revision 1109 - Directory Listing
Modified Tue Jan 3 16:42:31 2006 UTC (13 years, 9 months ago) by maechler
"diagonalMatrix" class and subclasses with a few methods; very basic "ltTMatrix" methods

Revision 1108 - Directory Listing
Modified Mon Jan 2 23:02:07 2006 UTC (13 years, 9 months ago) by maechler
isSymmetric() generic must match isSymmetric in R-devel

Revision 1098 - Directory Listing
Modified Thu Dec 29 11:38:59 2005 UTC (13 years, 9 months ago) by maechler
some 2-argument-tcrossprod methods (and test svn)

Revision 1090 - Directory Listing
Modified Mon Dec 12 13:58:10 2005 UTC (13 years, 10 months ago) by maechler
Brian's version of 2-arg tcrossprod()

Revision 1087 - Directory Listing
Modified Fri Dec 9 20:55:39 2005 UTC (13 years, 10 months ago) by maechler
make tcrossprod() use 2 arguments (x, y=NULL)

Revision 1084 - Directory Listing
Modified Fri Dec 9 15:41:00 2005 UTC (13 years, 10 months ago) by maechler
thinko in dimNamesCheck()

Revision 1063 - Directory Listing
Modified Sat Nov 26 16:29:39 2005 UTC (13 years, 10 months ago) by bates
Add zapsmall method

Revision 1059 - Directory Listing
Modified Wed Nov 23 22:20:13 2005 UTC (13 years, 10 months ago) by bates
Matrix multiplication and coersion at higher level

Revision 1056 - Directory Listing
Modified Tue Nov 22 16:40:49 2005 UTC (13 years, 10 months ago) by maechler
require(methods) needed according to the docs

Revision 1038 - Directory Listing
Modified Fri Nov 11 21:22:08 2005 UTC (13 years, 11 months ago) by bates
Adding PACKAGE = to .Call

Revision 1037 - Directory Listing
Modified Fri Nov 11 14:57:22 2005 UTC (13 years, 11 months ago) by bates
Adding PACKAGE = to .Call lines

Revision 987 - Directory Listing
Modified Tue Oct 25 17:38:46 2005 UTC (13 years, 11 months ago) by bates
need a drop = FALSE in a subscripting operation

Revision 986 - Directory Listing
Modified Fri Oct 21 19:36:30 2005 UTC (13 years, 11 months ago) by bates
Remove references to mer2 and mltloc.rda which are now in a branch

Revision 984 - Directory Listing
Modified Tue Oct 11 18:08:46 2005 UTC (14 years ago) by bates
Tidying up

Revision 981 - Directory Listing
Modified Tue Oct 11 14:12:19 2005 UTC (14 years ago) by bates
Evaluate model frame before glm model of fixed effects

Revision 979 - Directory Listing
Modified Tue Oct 11 00:02:45 2005 UTC (14 years ago) by bates
Added a FIXME - will fix later

Revision 978 - Directory Listing
Modified Mon Oct 10 13:54:09 2005 UTC (14 years ago) by bates
More mer2 modifications

Revision 973 - Directory Listing
Modified Fri Oct 7 20:15:08 2005 UTC (14 years ago) by maechler
isSymmetric() & simulate() updates; sparse subsetting

Revision 972 - Directory Listing
Modified Fri Oct 7 20:13:24 2005 UTC (14 years ago) by maechler
comments and more (hidden) as.Matrix utilities

Revision 967 - Directory Listing
Modified Thu Oct 6 03:07:23 2005 UTC (14 years ago) by bates
More updates on lmer - still not quite correct

Revision 965 - Directory Listing
Modified Wed Oct 5 16:57:55 2005 UTC (14 years ago) by maechler
(comments)

Revision 963 - Directory Listing
Modified Mon Oct 3 01:44:56 2005 UTC (14 years ago) by bates
Modifications to mer2

Revision 959 - Directory Listing
Modified Sat Oct 1 20:10:20 2005 UTC (14 years ago) by maechler
dtC -> dgC coercion

Revision 958 - Directory Listing
Modified Sat Oct 1 20:08:51 2005 UTC (14 years ago) by maechler
add "self-documenting" argument names

Revision 956 - Directory Listing
Modified Fri Sep 30 17:28:00 2005 UTC (14 years ago) by maechler
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...

Revision 954 - Directory Listing
Modified Wed Sep 28 19:34:31 2005 UTC (14 years ago) by maechler
more "Compare" and some "!" methods; expm() for sparse; updated tests

Revision 953 - Directory Listing
Modified Wed Sep 28 19:31:36 2005 UTC (14 years ago) by maechler
move "factors" slot to "Matrix"

Revision 949 - Directory Listing
Modified Wed Sep 28 09:17:08 2005 UTC (14 years ago) by maechler
cleanup

Revision 946 - Directory Listing
Modified Wed Sep 28 08:56:42 2005 UTC (14 years ago) by maechler
some "Summary" methods; some "Compare" group methods; logical dense matrices

Revision 940 - Directory Listing
Modified Tue Sep 27 00:50:35 2005 UTC (14 years ago) by bates
Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

Revision 939 - Directory Listing
Modified Tue Sep 20 17:23:24 2005 UTC (14 years ago) by bates
More careful checking for linear mixed model

Revision 936 - Directory Listing
Modified Tue Sep 20 10:15:26 2005 UTC (14 years ago) by maechler
move setGeneric to AllGeneric

Revision 928 - Directory Listing
Modified Mon Sep 19 21:10:59 2005 UTC (14 years ago) by bates
crossprod and tcrossprod for Tsparse

Revision 925 - Directory Listing
Modified Mon Sep 19 19:01:31 2005 UTC (14 years ago) by maechler
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more  "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

Revision 923 - Directory Listing
Modified Sun Sep 18 23:41:45 2005 UTC (14 years, 1 month ago) by bates
More progress on incorporating CHOLMOD - still not passing CMD check

Revision 922 - Directory Listing
Modified Sun Sep 18 16:33:54 2005 UTC (14 years, 1 month ago) by bates
Added CHOLMOD-based C functions.  Still need methods defined in R and some error checking

Revision 919 - Directory Listing
Modified Fri Sep 16 17:27:06 2005 UTC (14 years, 1 month ago) by maechler
new compressed_non_0_ij()

Revision 910 - Directory Listing
Modified Fri Sep 9 08:12:58 2005 UTC (14 years, 1 month ago) by maechler
comments & update for Diagonal

Revision 908 - Directory Listing
Modified Thu Sep 8 15:30:08 2005 UTC (14 years, 1 month ago) by maechler
cbind() / cbind2() methods for R >= 2.2.0

Revision 904 - Directory Listing
Modified Wed Sep 7 20:43:59 2005 UTC (14 years, 1 month ago) by bates
Fix readHB according to bug report from Roger Koenker

Revision 902 - Directory Listing
Modified Tue Sep 6 14:07:10 2005 UTC (14 years, 1 month ago) by bates


Revision 901 - Directory Listing
Modified Tue Sep 6 01:26:11 2005 UTC (14 years, 1 month ago) by bates
Add "start" argument to lmer

Revision 898 - Directory Listing
Modified Sat Sep 3 21:58:37 2005 UTC (14 years, 1 month ago) by maechler
+ prototypes for validity; pMatrix validity

Revision 897 - Directory Listing
Modified Sat Sep 3 21:57:55 2005 UTC (14 years, 1 month ago) by maechler
cosmetic: stay within integers

Revision 892 - Directory Listing
Modified Fri Sep 2 13:40:47 2005 UTC (14 years, 1 month ago) by maechler
move some methods from lgT to lsparse

Revision 888 - Directory Listing
Modified Thu Sep 1 13:46:21 2005 UTC (14 years, 1 month ago) by bates
New simulate method for lmer objects

Revision 887 - Directory Listing
Modified Wed Aug 31 20:31:47 2005 UTC (14 years, 1 month ago) by maechler
uplo &diag slots now go with superclass triangular* or symmetric*

Revision 886 - Directory Listing
Modified Wed Aug 31 17:49:47 2005 UTC (14 years, 1 month ago) by maechler
new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do

Revision 880 - Directory Listing
Modified Tue Aug 30 14:36:41 2005 UTC (14 years, 1 month ago) by bates
More coercion methods

Revision 879 - Directory Listing
Modified Tue Aug 30 14:35:05 2005 UTC (14 years, 1 month ago) by bates
Added simulate generic and method

Revision 878 - Directory Listing
Modified Sun Aug 28 13:57:39 2005 UTC (14 years, 1 month ago) by bates
Add simulate method for lmer

Revision 876 - Directory Listing
Modified Sat Aug 27 22:50:57 2005 UTC (14 years, 1 month ago) by bates
clean up conversion of graphNEL to sparseMatrix

Revision 875 - Directory Listing
Modified Sat Aug 27 21:29:21 2005 UTC (14 years, 1 month ago) by maechler
indexing (mainly denseMatrix) - using "vector" indices

Revision 874 - Directory Listing
Modified Sat Aug 27 21:27:51 2005 UTC (14 years, 1 month ago) by maechler
prepare graphNEL coercion both for directed and undir.

Revision 871 - Directory Listing
Modified Fri Aug 26 17:26:49 2005 UTC (14 years, 1 month ago) by maechler
Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples

Revision 870 - Directory Listing
Modified Fri Aug 26 17:25:03 2005 UTC (14 years, 1 month ago) by maechler
"Summary" method -> found R-bug

Revision 868 - Directory Listing
Modified Fri Aug 19 17:01:11 2005 UTC (14 years, 2 months ago) by maechler
printing of sparse logicals; "[" reorganization (part 1)

Revision 867 - Directory Listing
Modified Fri Aug 19 16:59:46 2005 UTC (14 years, 2 months ago) by maechler
new "gTMatrix" virtual class

Revision 865 - Directory Listing
Modified Fri Aug 19 16:57:49 2005 UTC (14 years, 2 months ago) by maechler
setAs( to "lgTMatrix" )

Revision 864 - Directory Listing
Modified Thu Aug 18 21:36:49 2005 UTC (14 years, 2 months ago) by bates
It's 'warning', not 'warn'

Revision 862 - Directory Listing
Modified Thu Aug 18 21:31:07 2005 UTC (14 years, 2 months ago) by bates
Coercion method for graphNEL to sparseMatrix class

Revision 861 - Directory Listing
Modified Thu Aug 18 21:29:52 2005 UTC (14 years, 2 months ago) by bates
Fix column labels on mcmcsamp for glmer objects

Revision 857 - Directory Listing
Modified Tue Aug 16 22:19:58 2005 UTC (14 years, 2 months ago) by bates
Change method of reading Harwell-Boeing matrix format and change example

Revision 856 - Directory Listing
Modified Tue Aug 16 20:20:13 2005 UTC (14 years, 2 months ago) by maechler
small fixups

Revision 855 - Directory Listing
Modified Tue Aug 16 18:57:36 2005 UTC (14 years, 2 months ago) by maechler
first place to use callNextMethod()

Revision 852 - Directory Listing
Modified Tue Aug 16 17:52:16 2005 UTC (14 years, 2 months ago) by bates
Move readHB and readMM to R code and allow the use of connections

Revision 851 - Directory Listing
Modified Tue Aug 16 17:39:38 2005 UTC (14 years, 2 months ago) by maechler
export  dgR*, dsR* & dtR* Matrix - and "fix" stubs

Revision 848 - Directory Listing
Modified Thu Aug 11 07:41:59 2005 UTC (14 years, 2 months ago) by maechler
+"denseMatrix" class; export defined but unused classes

Revision 846 - Directory Listing
Modified Wed Aug 10 22:08:35 2005 UTC (14 years, 2 months ago) by bates
Release 0.98-3

Revision 843 - Directory Listing
Modified Wed Aug 10 18:24:18 2005 UTC (14 years, 2 months ago) by maechler
comment

Revision 842 - Directory Listing
Modified Tue Aug 9 14:23:37 2005 UTC (14 years, 2 months ago) by bates
Modify column names for transformed parameters in mcmcsamp

Revision 835 - Directory Listing
Modified Mon Aug 8 13:33:18 2005 UTC (14 years, 2 months ago) by bates
Add writeHB and writeMM methods and generic

Revision 833 - Directory Listing
Modified Mon Aug 8 08:35:17 2005 UTC (14 years, 2 months ago) by maechler
fixing to unused Lower/Upper Triangular test functions

Revision 832 - Directory Listing
Modified Mon Aug 8 08:33:55 2005 UTC (14 years, 2 months ago) by maechler
lmer()`s "model = T/F" and control arguments; add comments and "FIXME"s

Revision 831 - Directory Listing
Modified Mon Aug 8 08:24:10 2005 UTC (14 years, 2 months ago) by maechler
note on setGeneric("lmer",*) - match.call() pecularity

Revision 829 - Directory Listing
Modified Mon Aug 8 08:21:47 2005 UTC (14 years, 2 months ago) by maechler
re-assign as.matrix() in base (!) -- experimental

Revision 825 - Directory Listing
Modified Sun Aug 7 15:22:33 2005 UTC (14 years, 2 months ago) by bates
Harwell-Boeing and MatrixMarket formats

Revision 824 - Directory Listing
Modified Sat Aug 6 20:01:51 2005 UTC (14 years, 2 months ago) by bates
Allow mcmcsamp on transformed parameters

Revision 823 - Directory Listing
Modified Sat Jul 30 21:35:38 2005 UTC (14 years, 2 months ago) by maechler
+ tcrossprod() method for simple "matrix" and "numeric"

Revision 820 - Directory Listing
Modified Wed Jul 27 23:07:04 2005 UTC (14 years, 2 months ago) by bates
Version 0.98-1

Revision 814 - Directory Listing
Modified Thu Jul 21 23:05:52 2005 UTC (14 years, 2 months ago) by bates
Working version of the glmmMCMC producing an mcmc object

Revision 813 - Directory Listing
Modified Thu Jul 21 16:41:42 2005 UTC (14 years, 2 months ago) by bates
New sampling for glmerMCMC but intermediates are not appropriately PROTECTed

Revision 812 - Directory Listing
Modified Thu Jul 21 14:59:04 2005 UTC (14 years, 2 months ago) by bates
Added an rWishart function, which should later be moved to the stats package

Revision 811 - Directory Listing
Modified Thu Jul 14 15:37:41 2005 UTC (14 years, 3 months ago) by bates
Modifications to glmmMCMC

Revision 810 - Directory Listing
Modified Thu Jul 14 13:48:38 2005 UTC (14 years, 3 months ago) by bates
Modifications to glmmMCMC

Revision 809 - Directory Listing
Modified Tue Jul 12 23:00:50 2005 UTC (14 years, 3 months ago) by bates
Release 0.97-4 with fix suggested by DTL

Revision 806 - Directory Listing
Modified Fri Jul 8 15:38:43 2005 UTC (14 years, 3 months ago) by bates
Preliminary version of glmmMCMC

Revision 804 - Directory Listing
Modified Thu Jul 7 20:05:47 2005 UTC (14 years, 3 months ago) by bates
Preparing for glmmMCMC

Revision 802 - Directory Listing
Modified Wed Jul 6 23:55:39 2005 UTC (14 years, 3 months ago) by bates
got glmer_fixed_update working

Revision 801 - Directory Listing
Modified Wed Jul 6 16:24:33 2005 UTC (14 years, 3 months ago) by bates
Updates for release 0.97-2

Revision 799 - Directory Listing
Modified Tue Jul 5 00:37:34 2005 UTC (14 years, 3 months ago) by bates
Increase default maxIter and calculate nAGQ more carefully

Revision 792 - Directory Listing
Modified Sat Jul 2 20:58:14 2005 UTC (14 years, 3 months ago) by maechler
cosmetic

Revision 787 - Directory Listing
Modified Thu Jun 30 16:59:12 2005 UTC (14 years, 3 months ago) by bates
Still modifying glmer_devAGQ

Revision 784 - Directory Listing
Modified Sun Jun 26 03:42:21 2005 UTC (14 years, 3 months ago) by bates
More work on MCMC (still incomplete)

Revision 782 - Directory Listing
Modified Fri Jun 24 23:06:33 2005 UTC (14 years, 3 months ago) by bates
Adding MCMC capability (currently incomplete)

Revision 781 - Directory Listing
Modified Fri Jun 24 15:38:43 2005 UTC (14 years, 3 months ago) by bates
Further development on AGQ and MCMC for glmm models

Revision 780 - Directory Listing
Modified Sun Jun 19 14:59:30 2005 UTC (14 years, 4 months ago) by bates
Release 0.96-3

Revision 779 - Directory Listing
Modified Wed Jun 15 15:52:19 2005 UTC (14 years, 4 months ago) by bates
Adding AGQ (but not yet correct)

Revision 777 - Directory Listing
Modified Tue Jun 14 04:02:57 2005 UTC (14 years, 4 months ago) by bates
release 0.96-2

Revision 776 - Directory Listing
Modified Mon Jun 13 19:45:04 2005 UTC (14 years, 4 months ago) by bates
Setting up for AGQ

Revision 775 - Directory Listing
Modified Mon Jun 13 01:22:28 2005 UTC (14 years, 4 months ago) by bates
Factoring C code in preparation for AGQ

Revision 774 - Directory Listing
Modified Fri Jun 10 18:40:54 2005 UTC (14 years, 4 months ago) by bates
Moving devLaplace calculations to C code

Revision 772 - Directory Listing
Modified Thu Jun 9 16:57:55 2005 UTC (14 years, 4 months ago) by bates
Prepare for release 0.96-1

Revision 769 - Directory Listing
Modified Wed Jun 8 23:47:45 2005 UTC (14 years, 4 months ago) by bates
Moving lmer to the Matrix package

Revision 760 - Directory Listing
Modified Mon Jun 6 15:48:13 2005 UTC (14 years, 4 months ago) by bates
Fix matrix multiplication methods

Revision 731 - Directory Listing
Modified Tue May 17 17:17:29 2005 UTC (14 years, 5 months ago) by bates
Cosmetic changes

Revision 730 - Directory Listing
Modified Tue May 17 17:16:53 2005 UTC (14 years, 5 months ago) by bates
Adding logical sparse matrix methods

Revision 729 - Directory Listing
Modified Tue May 17 17:16:39 2005 UTC (14 years, 5 months ago) by bates
Adding logical sparse matrix methods

Revision 723 - Directory Listing
Modified Tue May 10 01:42:05 2005 UTC (14 years, 5 months ago) by bates
More logical sparse matrix methods

Revision 720 - Directory Listing
Modified Mon May 9 01:32:44 2005 UTC (14 years, 5 months ago) by bates
Methods for logical general sparse matrices

Revision 718 - Directory Listing
Modified Mon May 9 01:24:35 2005 UTC (14 years, 5 months ago) by bates
Getting ready for a release

Revision 714 - Directory Listing
Modified Fri May 6 23:52:34 2005 UTC (14 years, 5 months ago) by bates
Added colSums and friends for dgeMatrix class

Revision 703 - Directory Listing
Modified Thu Apr 21 22:00:04 2005 UTC (14 years, 5 months ago) by bates
Replace identical(TRUE, ...) by isTRUE(...)

Revision 702 - Directory Listing
Modified Thu Apr 21 13:00:36 2005 UTC (14 years, 5 months ago) by bates
Moving Doxyfile

Revision 699 - Directory Listing
Modified Mon Apr 18 20:20:46 2005 UTC (14 years, 6 months ago) by maechler
comment out "integer" methods: those are now part of "numeric"

Revision 698 - Directory Listing
Modified Mon Apr 18 20:20:04 2005 UTC (14 years, 6 months ago) by maechler
numeric x dgeMatrix : for solve etc; semi-activate the as.Matrix() idea

Revision 693 - Directory Listing
Modified Mon Apr 18 17:02:26 2005 UTC (14 years, 6 months ago) by bates
In R-2.1.0 matrix dispatches before integer so always set storage.mode on objects of class "matrix"

Revision 692 - Directory Listing
Modified Mon Apr 18 14:34:33 2005 UTC (14 years, 6 months ago) by bates
Release 0.95-6

Revision 687 - Directory Listing
Modified Fri Apr 1 07:36:09 2005 UTC (14 years, 6 months ago) by maechler
"[" and show() methods for sparse matrices => RFC

Revision 686 - Directory Listing
Modified Thu Mar 31 21:19:35 2005 UTC (14 years, 6 months ago) by bates
Create "fallback" methods for any kind of numeric, dense matrix

Revision 684 - Directory Listing
Modified Thu Mar 31 17:56:46 2005 UTC (14 years, 6 months ago) by bates
Multiplication operations for sparseMatrix and ddenseMatrix

Revision 683 - Directory Listing
Modified Thu Mar 31 17:10:16 2005 UTC (14 years, 6 months ago) by bates
Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class

Revision 677 - Directory Listing
Modified Mon Mar 28 14:03:32 2005 UTC (14 years, 6 months ago) by bates
Added dgRMatrix methods and documentation

Revision 676 - Directory Listing
Modified Sat Mar 26 15:59:18 2005 UTC (14 years, 6 months ago) by maechler
+ virtual "sparseMatrix" classes

Revision 666 - Directory Listing
Modified Thu Mar 24 13:50:16 2005 UTC (14 years, 6 months ago) by bates
Add replace functions to calls to setIs for symmetric to positive definite

Revision 665 - Directory Listing
Modified Thu Mar 24 13:06:09 2005 UTC (14 years, 6 months ago) by bates
Removing the ssclme and sscCrosstab classes

Revision 664 - Directory Listing
Modified Thu Mar 24 13:00:09 2005 UTC (14 years, 6 months ago) by maechler
make virtual classes "VIRTUAL"

Revision 662 - Directory Listing
Modified Wed Mar 23 17:34:59 2005 UTC (14 years, 6 months ago) by bates
Moving all ssclme-related R code to the lme4 package

Revision 658 - Directory Listing
Modified Thu Mar 17 17:52:06 2005 UTC (14 years, 7 months ago) by maechler
+ as.matrix() + unname() method

Revision 657 - Directory Listing
Modified Wed Mar 16 16:57:52 2005 UTC (14 years, 7 months ago) by maechler
more %*% and setAs(); tests too

Revision 656 - Directory Listing
Modified Wed Mar 16 16:55:32 2005 UTC (14 years, 7 months ago) by maechler
rename s/M.n/M.v/ etc

Revision 654 - Directory Listing
Modified Wed Mar 16 16:18:33 2005 UTC (14 years, 7 months ago) by bates
Generalize matrix multiplication and solve methods

Revision 653 - Directory Listing
Modified Wed Mar 16 16:17:43 2005 UTC (14 years, 7 months ago) by bates
include permutation in expand method for LU

Revision 652 - Directory Listing
Modified Wed Mar 16 01:08:36 2005 UTC (14 years, 7 months ago) by bates
Updates to multiplication and other methods

Revision 650 - Directory Listing
Modified Tue Mar 15 01:53:58 2005 UTC (14 years, 7 months ago) by bates
Correct the coercion to matrix

Revision 643 - Directory Listing
Modified Tue Mar 15 00:50:48 2005 UTC (14 years, 7 months ago) by bates
Adding many methods for the dsyMatrix class

Revision 642 - Directory Listing
Modified Tue Mar 15 00:49:32 2005 UTC (14 years, 7 months ago) by bates
'unpack' methods

Revision 641 - Directory Listing
Modified Tue Mar 15 00:48:34 2005 UTC (14 years, 7 months ago) by bates
Clean up the 't' method

Revision 638 - Directory Listing
Modified Tue Mar 15 00:43:21 2005 UTC (14 years, 7 months ago) by bates
permutation matrix class

Revision 635 - Directory Listing
Modified Tue Mar 15 00:40:26 2005 UTC (14 years, 7 months ago) by bates
Coercions and methods for dppMatrix and dspMatrix classes

Revision 632 - Directory Listing
Modified Sun Mar 13 21:00:53 2005 UTC (14 years, 7 months ago) by maechler
mv some to new Auxiliaries file (early in alphabetic sorting!)

Revision 631 - Directory Listing
Modified Sun Mar 13 04:34:52 2005 UTC (14 years, 7 months ago) by bates
Add BunchKaufman factorization

Revision 628 - Directory Listing
Modified Thu Mar 10 17:57:47 2005 UTC (14 years, 7 months ago) by maechler
more  %*% methods; some dimnames in C (untested); checks extended

Revision 619 - Directory Listing
Modified Sat Mar 5 21:21:31 2005 UTC (14 years, 7 months ago) by maechler
comments and cosmetic, setAs(.) first

Revision 618 - Directory Listing
Modified Sat Mar 5 21:20:42 2005 UTC (14 years, 7 months ago) by maechler
extended show Method, testing for "Matrix"; rather "ddenseMatrix" -> "matrix"

Revision 617 - Directory Listing
Modified Sat Mar 5 21:19:13 2005 UTC (14 years, 7 months ago) by maechler
+ setAs(*, "matrix")

Revision 616 - Directory Listing
Modified Sat Mar 5 21:17:40 2005 UTC (14 years, 7 months ago) by maechler
+ 2 crossprod methods

Revision 615 - Directory Listing
Modified Sat Mar 5 21:17:04 2005 UTC (14 years, 7 months ago) by maechler
L <-> U for transpose

Revision 610 - Directory Listing
Modified Fri Mar 4 17:34:19 2005 UTC (14 years, 7 months ago) by maechler
comments only

Revision 609 - Directory Listing
Modified Fri Mar 4 17:34:03 2005 UTC (14 years, 7 months ago) by maechler
add more %*% methods

Revision 608 - Directory Listing
Modified Fri Mar 4 17:33:29 2005 UTC (14 years, 7 months ago) by maechler
- move dim, dimnames, dimnames<-  methods to "Matrix" 
- add more %*% methods

Revision 607 - Directory Listing
Modified Fri Mar 4 17:33:03 2005 UTC (14 years, 7 months ago) by maechler
- move dim, dimnames, dimnames<-  methods from "dgeMatrix" to here
- setAs(* , to = "matrix")

Revision 606 - Directory Listing
Modified Fri Mar 4 17:29:37 2005 UTC (14 years, 7 months ago) by maechler
add "dMatrix" group methods and doc file

Revision 603 - Directory Listing
Modified Fri Mar 4 12:53:01 2005 UTC (14 years, 7 months ago) by bates
Define %*% method for dtpMatrix and matrix properly

Revision 597 - Directory Listing
Modified Thu Mar 3 19:58:59 2005 UTC (14 years, 7 months ago) by bates
Methods and coercions for the dtpMatrix class

Revision 593 - Directory Listing
Modified Thu Mar 3 05:17:32 2005 UTC (14 years, 7 months ago) by bates
Remove pdfactor class

Revision 589 - Directory Listing
Modified Wed Mar 2 19:53:53 2005 UTC (14 years, 7 months ago) by bates
more coercions

Revision 583 - Directory Listing
Modified Tue Mar 1 11:42:12 2005 UTC (14 years, 7 months ago) by maechler
dgCMatrix: needs explicit "dim" method (should not be needed!)

Revision 579 - Directory Listing
Modified Sun Feb 27 00:04:16 2005 UTC (14 years, 7 months ago) by maechler
dimnames(), "dimnames() <-", better t(), etc

Revision 574 - Directory Listing
Modified Sat Feb 26 18:06:32 2005 UTC (14 years, 7 months ago) by maechler
cosmetic

Revision 573 - Directory Listing
Modified Sat Feb 26 18:06:08 2005 UTC (14 years, 7 months ago) by maechler
more group methods and testing them

Revision 561 - Directory Listing
Modified Fri Feb 18 19:24:43 2005 UTC (14 years, 7 months ago) by bates
Release 0.95-1

Revision 557 - Directory Listing
Modified Thu Feb 17 01:18:02 2005 UTC (14 years, 8 months ago) by bates
Coercions and methods for the dsTMatrix class

Revision 552 - Directory Listing
Modified Tue Feb 15 23:39:40 2005 UTC (14 years, 8 months ago) by bates
triangular, triplet sparse matrices

Revision 542 - Directory Listing
Modified Thu Feb 10 17:30:10 2005 UTC (14 years, 8 months ago) by maechler
"Arith" group methods work!

Revision 541 - Directory Listing
Modified Thu Feb 10 14:36:45 2005 UTC (14 years, 8 months ago) by maechler
oops!

Revision 540 - Directory Listing
Modified Thu Feb 10 14:32:59 2005 UTC (14 years, 8 months ago) by maechler
more "Done"

Revision 538 - Directory Listing
Modified Thu Feb 10 13:50:27 2005 UTC (14 years, 8 months ago) by maechler
add @Dimnames (-> new "mm")

Revision 536 - Directory Listing
Modified Thu Feb 10 08:15:12 2005 UTC (14 years, 8 months ago) by bates
rearranging utility functions in the C code

Revision 523 - Directory Listing
Modified Mon Feb 7 09:25:50 2005 UTC (14 years, 8 months ago) by maechler
stop() for error()

Revision 521 - Directory Listing
Modified Sat Feb 5 17:04:56 2005 UTC (14 years, 8 months ago) by maechler
small update

Revision 513 - Directory Listing
Modified Fri Feb 4 23:46:08 2005 UTC (14 years, 8 months ago) by maechler
require() is not needed; ddense.. for "dsp"; cosmetic

Revision 512 - Directory Listing
Modified Fri Feb 4 23:45:12 2005 UTC (14 years, 8 months ago) by maechler
better show(); using new option "max.print"

Revision 510 - Directory Listing
Modified Fri Feb 4 23:36:17 2005 UTC (14 years, 8 months ago) by maechler
dimnames?

Revision 499 - Directory Listing
Modified Fri Feb 4 18:16:32 2005 UTC (14 years, 8 months ago) by maechler
- wrap line
- if(.) style in as.Matrix()

Revision 498 - Directory Listing
Modified Fri Feb 4 18:15:54 2005 UTC (14 years, 8 months ago) by maechler
cosmetic

Revision 495 - Directory Listing
Modified Thu Feb 3 18:48:31 2005 UTC (14 years, 8 months ago) by bates
Initial implementation of the Schur generic

Revision 494 - Directory Listing
Modified Thu Feb 3 18:47:41 2005 UTC (14 years, 8 months ago) by bates
Cleanup

Revision 492 - Directory Listing
Modified Thu Feb 3 14:24:03 2005 UTC (14 years, 8 months ago) by bates
Getting package to pass CMD check

Revision 489 - Directory Listing
Modified Wed Feb 2 19:12:03 2005 UTC (14 years, 8 months ago) by bates
renaming and rearranging classes

Revision 483 - Directory Listing
Modified Wed Feb 2 16:11:21 2005 UTC (14 years, 8 months ago) by bates
renaming and rearranging classes

Revision 482 - Directory Listing
Modified Wed Feb 2 15:37:31 2005 UTC (14 years, 8 months ago) by bates
renaming and rearranging classes

Revision 477 - Directory Listing
Modified Wed Feb 2 14:14:59 2005 UTC (14 years, 8 months ago) by bates
Renaming and reorganizing classes

Revision 476 - Directory Listing
Modified Wed Feb 2 11:51:24 2005 UTC (14 years, 8 months ago) by bates
Change name of slot from factorization to factors

Revision 475 - Directory Listing
Modified Tue Feb 1 14:44:06 2005 UTC (14 years, 8 months ago) by maechler
Martin`s cosmetics

Revision 474 - Directory Listing
Modified Tue Feb 1 14:41:24 2005 UTC (14 years, 8 months ago) by maechler
Hilbert(0)

Revision 471 - Directory Listing
Modified Mon Jan 31 21:17:57 2005 UTC (14 years, 8 months ago) by maechler
as.Matrix() shorter; cosmetic

Revision 461 - Directory Listing
Modified Sat Jan 29 14:09:38 2005 UTC (14 years, 8 months ago) by bates
Add expm function

Revision 451 - Directory Listing
Modified Sun Jan 23 10:05:53 2005 UTC (14 years, 8 months ago) by bates
New coercion method for cscBlocked objects

Revision 448 - Directory Listing
Modified Fri Jan 21 21:59:45 2005 UTC (14 years, 8 months ago) by bates
Release 0.8-23

Revision 440 - Directory Listing
Modified Wed Jan 19 11:21:28 2005 UTC (14 years, 8 months ago) by bates
Remove Linv slot in lmer class

Revision 436 - Directory Listing
Modified Mon Jan 17 12:46:13 2005 UTC (14 years, 9 months ago) by bates
Add slots to lmer class

Revision 433 - Directory Listing
Modified Thu Jan 13 19:35:19 2005 UTC (14 years, 9 months ago) by bates
Add the bVar slot to the lmer object

Revision 419 - Directory Listing
Modified Mon Jan 3 19:21:18 2005 UTC (14 years, 9 months ago) by bates
Change to the lmer representation

Revision 417 - Directory Listing
Modified Mon Jan 3 19:14:22 2005 UTC (14 years, 9 months ago) by bates
Change to the lmer representation

Revision 410 - Directory Listing
Modified Tue Dec 28 14:51:42 2004 UTC (14 years, 9 months ago) by bates
Working on the lmer classes

Revision 391 - Directory Listing
Modified Tue Dec 14 20:00:15 2004 UTC (14 years, 10 months ago) by bates
Add a coercion for tripletMatrix to matrix

Revision 353 - Directory Listing
Modified Sat Nov 27 01:43:15 2004 UTC (14 years, 10 months ago) by bates
Make factor reordering for bCrosstab optional

Revision 349 - Directory Listing
Modified Tue Nov 23 15:39:23 2004 UTC (14 years, 10 months ago) by bates
Change name of blocked/blocked crosstabulation to blocked crosstabulation

Revision 348 - Directory Listing
Modified Tue Nov 23 15:38:31 2004 UTC (14 years, 10 months ago) by bates
add blocked crosstabulations

Revision 337 - Directory Listing
Modified Fri Nov 12 21:13:59 2004 UTC (14 years, 11 months ago) by bates
Add addition method

Revision 336 - Directory Listing
Modified Fri Nov 12 21:13:40 2004 UTC (14 years, 11 months ago) by bates
Add tcrossprod method

Revision 335 - Directory Listing
Modified Fri Nov 12 21:12:54 2004 UTC (14 years, 11 months ago) by bates
Add cscBlocked class

Revision 334 - Directory Listing
Modified Fri Nov 12 21:11:45 2004 UTC (14 years, 11 months ago) by bates
Add generics

Revision 333 - Directory Listing
Modified Fri Nov 12 21:10:17 2004 UTC (14 years, 11 months ago) by bates
Add classes

Revision 325 - Directory Listing
Modified Sat Nov 6 18:03:00 2004 UTC (14 years, 11 months ago) by bates
Add blocked/blocked cross-tabulation class

Revision 324 - Directory Listing
Modified Sat Nov 6 18:02:01 2004 UTC (14 years, 11 months ago) by bates
Cosmetic changes

Revision 302 - Directory Listing
Modified Wed Oct 27 21:32:37 2004 UTC (14 years, 11 months ago) by bates
Remove PACKAGE="Matrix" in .Call

Revision 296 - Directory Listing
Modified Mon Oct 4 17:13:29 2004 UTC (15 years ago) by bates
Add registration of .Call functions

Revision 291 - Directory Listing
Modified Sun Oct 3 21:51:33 2004 UTC (15 years ago) by bates
Release 0.8-15

Revision 290 - Directory Listing
Modified Sat Oct 2 19:22:24 2004 UTC (15 years ago) by deepayan
fixed minor bug in panel function

Revision 283 - Directory Listing
Modified Sat Oct 2 17:05:34 2004 UTC (15 years ago) by bates
check for lattice package in image methods

Revision 279 - Directory Listing
Modified Sat Sep 11 14:40:25 2004 UTC (15 years, 1 month ago) by deepayan
fixed image method

Revision 272 - Directory Listing
Modified Thu Sep 2 23:14:00 2004 UTC (15 years, 1 month ago) by bates
Add cscBlocked, tweak lmeRep

Revision 268 - Directory Listing
Modified Tue Aug 31 19:13:33 2004 UTC (15 years, 1 month ago) by bates
New version

Revision 263 - Directory Listing
Modified Thu Aug 26 16:01:35 2004 UTC (15 years, 1 month ago) by bates
extending lmeRep to multiple nested grouping factors

Revision 257 - Directory Listing
Modified Tue Aug 24 02:08:08 2004 UTC (15 years, 1 month ago) by bates
Remove taucs, add lmeRep, new release

Revision 255 - Directory Listing
Modified Fri Aug 20 16:27:15 2004 UTC (15 years, 1 month ago) by bates
Add the lmeRep class

Revision 254 - Directory Listing
Modified Thu Aug 19 15:20:27 2004 UTC (15 years, 2 months ago) by deepayan
fixed problem in image method when not all rows and columns had at least one entry

Revision 247 - Directory Listing
Modified Mon Jul 12 17:41:57 2004 UTC (15 years, 3 months ago) by bates
Combine ssclme_coef and ssclme_coefUnc, ssclme_coefGets and ssclme_coefGetsUnc.  Reorganize gradient code in preparation for Hessian calculations.

Revision 241 - Directory Listing
Modified Wed Jul 7 18:23:11 2004 UTC (15 years, 3 months ago) by bates
Remove pdMat classes

Revision 202 - Directory Listing
Modified Tue Jun 1 19:38:39 2004 UTC (15 years, 4 months ago) by bates
Be more careful in calls to require

Revision 159 - Directory Listing
Modified Sun May 9 22:06:53 2004 UTC (15 years, 5 months ago) by bates
Remove storage of L-inverse

Revision 92 - Directory Listing
Modified Fri Apr 16 21:18:59 2004 UTC (15 years, 6 months ago) by bates
Watch methods and exports

Revision 73 - Directory Listing
Modified Tue Apr 13 15:53:38 2004 UTC (15 years, 6 months ago) by bates
R version of fill-reducing permutation

Revision 72 - Directory Listing
Modified Mon Apr 12 22:25:55 2004 UTC (15 years, 6 months ago) by bates
added R version of groupedPerm function, corrected sscCrosstab arguments

Revision 70 - Directory Listing
Modified Mon Apr 12 12:10:01 2004 UTC (15 years, 6 months ago) by bates
Adding coercions - fixing bugs

Revision 42 - Directory Listing
Modified Tue Mar 30 23:25:17 2004 UTC (15 years, 6 months ago) by bates
image method using lattice

Revision 41 - Directory Listing
Modified Tue Mar 30 23:23:53 2004 UTC (15 years, 6 months ago) by bates
Move image method here

Revision 40 - Directory Listing
Modified Tue Mar 30 23:21:34 2004 UTC (15 years, 6 months ago) by bates
Change coersions to R code only

Revision 18 - Directory Listing
Modified Tue Mar 23 23:29:32 2004 UTC (15 years, 6 months ago) by bates
Allow unconstrained coefficients

Revision 17 - Directory Listing
Modified Tue Mar 23 23:28:51 2004 UTC (15 years, 6 months ago) by bates
Cleaning up

Revision 14 - Directory Listing
Modified Tue Mar 23 13:16:47 2004 UTC (15 years, 6 months ago) by bates
initial version

Revision 13 - Directory Listing
Modified Tue Mar 23 13:16:19 2004 UTC (15 years, 6 months ago) by bates
Add diag slot to tscMatrix

Revision 10 - Directory Listing
Added Mon Mar 22 20:20:05 2004 UTC (15 years, 6 months ago) by bates
Initial import

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