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[seqinr] Index of /pkg/R
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Index of /pkg/R

Files shown:107
Directory revision: 2090 (of 2093)
Sticky Revision:


File Rev. Age Author Last log entry
 Parent Directory        
AAstat.R  1816  4 years  simonpenel  Start fusion with the 3.0-9 version from CRAN which is ok for R-3.1.2
ClassSeq.R  1495  10 years  lobry  generic print for qaw
GC.R  1447  10 years  simonpenel  
PI.R  1949  2 years  jeanlobry  adding a suppressWarning to fix Haruo Susuki request
R_socket.R  1447  10 years  simonpenel  
acnucclose.R  1447  10 years  simonpenel  
acnucopen.R  1447  10 years  simonpenel  
al2bp.R  1557  10 years  lobry  new split argument
allistranks.R  1447  10 years  simonpenel  
amb.R  1447  10 years  simonpenel  
as.alignment.R  1746  8 years  lobry  
as.matrix.alignment.R  1447  10 years  simonpenel  
autosocket.R  1816  4 years  simonpenel  Start fusion with the 3.0-9 version from CRAN which is ok for R-3.1.2
baselineabif.R  1659  9 years  lobry  new utility
bma.R  1447  10 years  simonpenel  
cai.R  1447  10 years  simonpenel  
choosebank.R  1816  4 years  simonpenel  Start fusion with the 3.0-9 version from CRAN which is ok for R-3.1.2
circle.R  1642  9 years  lobry  
clfcd.R  1447  10 years  simonpenel  
clientid.R  1447  10 years  simonpenel  
closebank.R  1447  10 years  simonpenel  
col2alpha.R  1633  9 years  lobry  
comp.R  1837  2 years  simonpenel   ambigous bases bug fixed in comp function (r->y, y->r)
consensus.R  1815  4 years  simonpenel  adding "row.names(matali)<-NULL " due to the change \item \code{apply(m,...
count.R  1738  8 years  lobry  word -> wordsize
countfreelists.R  1447  10 years  simonpenel  
countsubseqs.R  1447  10 years  simonpenel  
db.growth.R  1817  4 years  simonpenel  Modification of wrong url, setting example in dotchart.uco to dontrun
dia.bactgensize.R  1828  4 years  simonpenel  Now goldtable15Dec07 is available on the ftp of pbil
dist.alignment.R  1777  5 years  simonpenel  In function dist.alignment with nucleotides sequences, if gap option is set to 1...
dotPlot.R  1447  10 years  simonpenel  
dotchart.uco.R  2024  2 years  jeanlobry  fixing a bug in dotchart.uco
draw.oriloc.R  1447  10 years  simonpenel  
draw.rearranged.oriloc.R  1447  10 years  simonpenel  
draw.recstat.R  1761  7 years  simonpenel  Addition of the "recstat" function (Prediction of coding DNA sequences through t...
extract.breakpoints.R  1922  2 years  jeanlobry  Fix the wrning about segmented
extractseqs.R  1979  2 years  jeanlobry  adding a zlib argument to extractseqs
fastacc.R  1650  9 years  lobry  
gb2fasta.R  1957  2 years  jeanlobry  gb2fasta now uses a local file example
gbk2g2.R  1825  4 years  simonpenel  Now acces to voluminous data is done via ftp, changing R code
gbk2g2.euk.R  1447  10 years  simonpenel  
get.ncbi.R  1447  10 years  simonpenel  
getAnnot.R  1742  8 years  lobry  fixing the sapply/lapply bug
getFrag.R  1447  10 years  simonpenel  
getKeyword.R  1447  10 years  simonpenel  
getLength.R  1888  2 years  jeanlobry  to fix the getLength(ec999) bug repported by Haruo Suzuki
getLocation.R  1447  10 years  simonpenel  
getName.R  1447  10 years  simonpenel  
getSequence.R  1722  8 years  lobry  fixing Oliver Clay bug
getTrans.R  1568  9 years  lobry  Yann LESECQUE bug fix
getType.R  1447  10 years  simonpenel  
getlistrank.R  1447  10 years  simonpenel  
getliststate.R  1447  10 years  simonpenel  
gfrag.R  1447  10 years  simonpenel  
ghelp.R  1447  10 years  simonpenel  
isenum.R  1447  10 years  simonpenel  
kaks.R  2046  19 months  jeanlobry  adding the new argument rmgap to kaks
knowndbs.R  1447  10 years  simonpenel  
lseqinr.R  1447  10 years  simonpenel  
modifylist.R  1816  4 years  simonpenel  Start fusion with the 3.0-9 version from CRAN which is ok for R-3.1.2
move.R  1621  9 years  lobry  new function
oriloc.R  1893  2 years  jeanlobry  using the gzipped ct.fasta.gz
parser.socket.R  1447  10 years  simonpenel  
peakabif.R  1662  9 years  lobry  
permutation.R  1447  10 years  simonpenel  
plot.SeqAcnucWeb.R  1822  4 years  simonpenel  Replace gloalEnv by seqinrEnv in plot.SeqAcnucWeb.R
plotPanels.R  1636  9 years  lobry  
plotabif.R  1816  4 years  simonpenel  Start fusion with the 3.0-9 version from CRAN which is ok for R-3.1.2
plotladder.R  1816  4 years  simonpenel  Start fusion with the 3.0-9 version from CRAN which is ok for R-3.1.2
pmw.R  1447  10 years  simonpenel  
prepgetannots.R  1447  10 years  simonpenel  
prettyseq.R  1447  10 years  simonpenel  
query.r  1816  4 years  simonpenel  Start fusion with the 3.0-9 version from CRAN which is ok for R-3.1.2
quitacnuc.R  1447  10 years  simonpenel  
read.abif.R  1833  4 years  simonpenel  Adding little endian setting to pass Solaris tests
read.alignment.R  2090  11 months  jeanlobry  
read.fasta.R  2090  11 months  jeanlobry  
readBins.R  1615  9 years  lobry  fixing a bug with trailling tabulations
readPanels.R  1612  9 years  lobry  deletion of runs of tabulations
readfirstrec.R  1447  10 years  simonpenel  
readsmj.R  1447  10 years  simonpenel  
rearranged.oriloc.R  1893  2 years  jeanlobry  using the gzipped ct.fasta.gz
recstat.R  1761  7 years  simonpenel  Addition of the "recstat" function (Prediction of coding DNA sequences through t...
residuecount.R  1447  10 years  simonpenel  
reverse.align.R  1447  10 years  simonpenel  
rho.R  1737  8 years  lobry  rho() has gained a wordsize argument as suggested by Avril Coghlan
rot13.R  1447  10 years  simonpenel  
s2n.R  1447  10 years  simonpenel  
savelist.R  1447  10 years  simonpenel  
setlistname.R  1447  10 years  simonpenel  
splitseq.R  1447  10 years  simonpenel  
stresc.R  1770  6 years  simonpenel  The pipe caracter is now correctly processed thanks to Grabor Grothendieck
stutterabif.R  1664  9 years  lobry  new function for stutter ratio
swap.R  1620  9 years  lobry  new function
synonymous.R  1916  2 years  jeanlobry  One UTF-8 warning corrected
tablecode.R  2003  2 years  jeanlobry  pour suivre les good practices
test.co.recstat.R  1761  7 years  simonpenel  Addition of the "recstat" function (Prediction of coding DNA sequences through t...
test.li.recstat.R  1761  7 years  simonpenel  Addition of the "recstat" function (Prediction of coding DNA sequences through t...
translate.R  1447  10 years  simonpenel  
trimSpace.R  1672  9 years  lobry  extended deleted
uco.R  2024  2 years  jeanlobry  fixing a bug in dotchart.uco
util.R  1447  10 years  simonpenel  
where.is.this.acc.R  1720  9 years  lobry  new message when an acc is not found
words.R  1447  10 years  simonpenel  
words.pos.R  1673  9 years  lobry  extended deleted
write.fasta.R  1956  2 years  jeanlobry  typo
zscore.R  1769  6 years  simonpenel  Small modifications : supression of stderr C stuff, and partial match problems

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