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[matrix] Diff of /pkg/Matrix/src/Mutils.h
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Diff of /pkg/Matrix/src/Mutils.h

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pkg/src/Mutils.h revision 2348, Mon Mar 23 16:50:14 2009 UTC pkg/Matrix/src/Mutils.h revision 2850, Mon Oct 22 13:00:35 2012 UTC
# Line 1  Line 1 
1  #ifndef MATRIX_MUTILS_H  #ifndef MATRIX_MUTILS_H
2  #define MATRIX_MUTILS_H  #define MATRIX_MUTILS_H
3    
4  #define Matrix_with_SPQR  #undef Matrix_with_SPQR
5    
6  #ifdef __cplusplus  #ifdef __cplusplus
7  extern "C" {  extern "C" {
8  #endif  #endif
9    
10    #include <stdint.h> // C99 for int64_t
11  #include <ctype.h>  #include <ctype.h>
12  #include <R.h>  /* includes Rconfig.h */  #include <R.h>  /* includes Rconfig.h */
13  #include <Rversion.h>  #include <Rversion.h>
# Line 17  Line 18 
18  #define _(String) dgettext ("Matrix", String)  #define _(String) dgettext ("Matrix", String)
19  #else  #else
20  #define _(String) (String)  #define _(String) (String)
21    /* Note that this is not yet supported (for Windows, e.g.) in R 2.9.0 : */
22    #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String)
23  #endif  #endif
24    
25  #ifdef __GNUC__  #ifdef __GNUC__
# Line 27  Line 30 
30  # include <alloca.h>  # include <alloca.h>
31  #endif  #endif
32    
33    #ifndef LONG_VECTOR_SUPPORT
34    // notably for  R <= 2.15.x :
35    # define XLENGTH(x) LENGTH(x)
36    # if R_VERSION < R_Version(2,16,0)
37      typedef int R_xlen_t;
38    # endif
39    #endif
40    
41  #define Alloca(n, t)   (t *) alloca( (size_t) ( (n) * sizeof(t) ) )  #define Alloca(n, t)   (t *) alloca( (size_t) ( (n) * sizeof(t) ) )
42    
43  SEXP triangularMatrix_validate(SEXP obj);  SEXP triangularMatrix_validate(SEXP obj);
44  SEXP symmetricMatrix_validate(SEXP obj);  SEXP symmetricMatrix_validate(SEXP obj);
45  SEXP dense_nonpacked_validate(SEXP obj);  SEXP dense_nonpacked_validate(SEXP obj);
46    
47    // La_norm_type() & La_rcond_type()  have been in R_ext/Lapack.h
48    //  but have still not been available to package writers ...
49    char La_norm_type (const char *typstr);
50    char La_rcond_type(const char *typstr);
51    
52  /* enum constants from cblas.h and some short forms */  /* enum constants from cblas.h and some short forms */
53  enum CBLAS_ORDER {CblasRowMajor=101, CblasColMajor=102};  enum CBLAS_ORDER {CblasRowMajor=101, CblasColMajor=102};
54  enum CBLAS_TRANSPOSE {CblasNoTrans=111, CblasTrans=112, CblasConjTrans=113};  enum CBLAS_TRANSPOSE {CblasNoTrans=111, CblasTrans=112, CblasConjTrans=113};
# Line 51  Line 67 
67  #define LFT CblasLeft  #define LFT CblasLeft
68  #define RGT CblasRight  #define RGT CblasRight
69    
 #if !defined(R_VERSION) || R_VERSION < R_Version(2, 7, 0)  
 char La_norm_type(const char *typstr);  
 char La_rcond_type(const char *typstr);  
 #endif  
   
70  double get_double_by_name(SEXP obj, char *nm);  double get_double_by_name(SEXP obj, char *nm);
71  SEXP set_double_by_name(SEXP obj, double val, char *nm);  SEXP set_double_by_name(SEXP obj, double val, char *nm);
72  SEXP as_det_obj(double val, int log, int sign);  SEXP as_det_obj(double val, int log, int sign);
# Line 69  Line 80 
80  /* int csc_unsorted_columns(int ncol, const int p[], const int i[]); */  /* int csc_unsorted_columns(int ncol, const int p[], const int i[]); */
81  /* void csc_sort_columns(int ncol, const int p[], int i[], double x[]); */  /* void csc_sort_columns(int ncol, const int p[], int i[], double x[]); */
82  /* SEXP csc_check_column_sorting(SEXP A); */  /* SEXP csc_check_column_sorting(SEXP A); */
83  SEXP Matrix_make_named(int TYP, const char **names);  
84  SEXP check_scalar_string(SEXP sP, char *vals, char *nm);  SEXP check_scalar_string(SEXP sP, char *vals, char *nm);
85  Rboolean equal_string_vectors(SEXP s1, SEXP s2);  Rboolean equal_string_vectors(SEXP s1, SEXP s2);
86    
87  void d_packed_getDiag(double *dest, SEXP x, int n);  void d_packed_getDiag(double *dest, SEXP x, int n);
88  void l_packed_getDiag(   int *dest, SEXP x, int n);  void l_packed_getDiag(   int *dest, SEXP x, int n);
89  void tr_d_packed_getDiag(double *dest, SEXP x);  SEXP d_packed_setDiag(double *diag, int l_d, SEXP x, int n);
90  void tr_l_packed_getDiag(   int *dest, SEXP x);  SEXP l_packed_setDiag(   int *diag, int l_d, SEXP x, int n);
91    SEXP d_packed_addDiag(double *diag, int l_d, SEXP x, int n);
92    
93    void tr_d_packed_getDiag(double *dest, SEXP x, int n);
94    void tr_l_packed_getDiag(   int *dest, SEXP x, int n);
95    
96    SEXP tr_d_packed_setDiag(double *diag, int l_d, SEXP x, int n);
97    SEXP tr_l_packed_setDiag(   int *diag, int l_d, SEXP x, int n);
98    SEXP tr_d_packed_addDiag(double *diag, int l_d, SEXP x, int n);
99    
100  SEXP Matrix_getElement(SEXP list, char *nm);  SEXP Matrix_getElement(SEXP list, char *nm);
101    
# Line 113  Line 132 
132      if(GET_SLOT(src, sym) != R_NilValue)                        \      if(GET_SLOT(src, sym) != R_NilValue)                        \
133          SET_SLOT(dest, sym, duplicate(GET_SLOT(src, sym)))          SET_SLOT(dest, sym, duplicate(GET_SLOT(src, sym)))
134    
135    #define slot_dup_if_has(dest, src, sym)                         \
136        if(R_has_slot(src, sym))                                    \
137            SET_SLOT(dest, sym, duplicate(GET_SLOT(src, sym)))
138    
139  /* TODO: Make this faster for the case where dimnames = list(NULL,NULL)  /* TODO: Make this faster for the case where dimnames = list(NULL,NULL)
140   *       and hence don't have to be set ! */   *       and hence don't have to be set ! */
141  #define SET_DimNames(dest, src) slot_dup(dest, src, Matrix_DimNamesSym)  #define SET_DimNames(dest, src) slot_dup(dest, src, Matrix_DimNamesSym)
# Line 120  Line 143 
143    
144  #define uplo_P(_x_) CHAR(STRING_ELT(GET_SLOT(_x_, Matrix_uploSym), 0))  #define uplo_P(_x_) CHAR(STRING_ELT(GET_SLOT(_x_, Matrix_uploSym), 0))
145  #define diag_P(_x_) CHAR(STRING_ELT(GET_SLOT(_x_, Matrix_diagSym), 0))  #define diag_P(_x_) CHAR(STRING_ELT(GET_SLOT(_x_, Matrix_diagSym), 0))
146    #define Diag_P(_x_) (R_has_slot(x, Matrix_diagSym) ?                    \
147                         CHAR(STRING_ELT(GET_SLOT(_x_, Matrix_diagSym), 0)) : " ")
148  #define class_P(_x_) CHAR(asChar(getAttrib(_x_, R_ClassSymbol)))  #define class_P(_x_) CHAR(asChar(getAttrib(_x_, R_ClassSymbol)))
149    
150    
151    // Define this "Cholmod compatible" to some degree
152    enum x_slot_kind {x_pattern=-1, x_double=0, x_logical=1, x_integer=2, x_complex=3};
153    //                  n             d           l            i            z
154    
155  /* should also work for "matrix" matrices: */  /* should also work for "matrix" matrices: */
156  #define Real_KIND(_x_)  (IS_S4_OBJECT(_x_) ? Real_kind(_x_) : \  #define Real_KIND(_x_)  (IS_S4_OBJECT(_x_) ? Real_kind(_x_) : \
157                           (isReal(_x_) ? 0 : (isLogical(_x_) ? 1 : -1)))                           (isReal(_x_) ? x_double : (isLogical(_x_) ? x_logical : -1)))
158  /* This one gives '0' also for integer "matrix" :*/  /* This one gives '0' also for integer "matrix" :*/
159  #define Real_KIND2(_x_) (IS_S4_OBJECT(_x_) ? Real_kind(_x_) : \  #define Real_KIND2(_x_) (IS_S4_OBJECT(_x_) ? Real_kind(_x_) : \
160                           (isLogical(_x_) ? 1 : 0))                           (isLogical(_x_) ? x_logical : 0))
161    
162  /* requires 'x' slot: */  /* requires 'x' slot: */
163  #define Real_kind(_x_)  (isReal(GET_SLOT(_x_, Matrix_xSym)) ? 0 :       \  #define Real_kind(_x_)  (isReal(GET_SLOT(_x_, Matrix_xSym)) ? 0 :       \
# Line 207  Line 237 
237  /**  /**
238   * Check if slot(obj, "x") contains any NA (or NaN).   * Check if slot(obj, "x") contains any NA (or NaN).
239   *   *
240   * @param obj   a 'Matrix' object with an 'x' slot.   * @param obj   a 'Matrix' object with a (double precision) 'x' slot.
241   *   *
242   * @return Rboolean :== any(is.na(slot(obj, "x") )   * @return Rboolean :== any(is.na(slot(obj, "x") )
243   */   */
244  static R_INLINE  static R_INLINE
245  Rboolean any_NA(SEXP obj)  Rboolean any_NA_in_x(SEXP obj)
246  {  {
247      double *x = REAL(GET_SLOT(obj, Matrix_xSym));      double *x = REAL(GET_SLOT(obj, Matrix_xSym));
248      int i, n = LENGTH(GET_SLOT(obj, Matrix_xSym));      int i, n = LENGTH(GET_SLOT(obj, Matrix_xSym));
# Line 222  Line 252 
252      return FALSE;      return FALSE;
253  }  }
254    
255    SEXP Mmatrix(SEXP args);
256    
257  void make_d_matrix_triangular(double *x, SEXP from);  void make_d_matrix_triangular(double *x, SEXP from);
258  void make_i_matrix_triangular(   int *x, SEXP from);  void make_i_matrix_triangular(   int *x, SEXP from);
# Line 235  Line 266 
266  SEXP dup_mMatrix_as_geMatrix (SEXP A);  SEXP dup_mMatrix_as_geMatrix (SEXP A);
267    
268  SEXP new_dgeMatrix(int nrow, int ncol);  SEXP new_dgeMatrix(int nrow, int ncol);
269  SEXP m_encodeInd (SEXP ij, SEXP di);  SEXP m_encodeInd (SEXP ij, SEXP di, SEXP chk_bnds);
270  SEXP m_encodeInd2(SEXP i, SEXP j, SEXP di);  SEXP m_encodeInd2(SEXP i, SEXP j, SEXP di, SEXP chk_bnds);
271    
272    
273  static R_INLINE SEXP  static R_INLINE SEXP
# Line 251  Line 282 
282      return strcmp(class_P(A) + 1, "geMatrix") ? dup_mMatrix_as_geMatrix(A) : A;      return strcmp(class_P(A) + 1, "geMatrix") ? dup_mMatrix_as_geMatrix(A) : A;
283  }  }
284    
285    // Keep centralized --- *and* in sync with ../inst/include/Matrix.h :
286    #define MATRIX_VALID_dense                      \
287            "dmatrix", "dgeMatrix",                 \
288            "lmatrix", "lgeMatrix",                 \
289            "nmatrix", "ngeMatrix",                 \
290            "zmatrix", "zgeMatrix"
291    
292    #define MATRIX_VALID_Csparse                    \
293     "dgCMatrix", "dsCMatrix", "dtCMatrix",         \
294     "lgCMatrix", "lsCMatrix", "ltCMatrix",         \
295     "ngCMatrix", "nsCMatrix", "ntCMatrix",         \
296     "zgCMatrix", "zsCMatrix", "ztCMatrix"
297    
298    #define MATRIX_VALID_Tsparse                    \
299     "dgTMatrix", "dsTMatrix", "dtTMatrix",         \
300     "lgTMatrix", "lsTMatrix", "ltTMatrix",         \
301     "ngTMatrix", "nsTMatrix", "ntTMatrix",         \
302     "zgTMatrix", "zsTMatrix", "ztTMatrix"
303    
304    #define MATRIX_VALID_Rsparse                    \
305     "dgRMatrix", "dsRMatrix", "dtRMatrix",         \
306     "lgRMatrix", "lsRMatrix", "ltRMatrix",         \
307     "ngRMatrix", "nsRMatrix", "ntRMatrix",         \
308     "zgRMatrix", "zsRMatrix", "ztRMatrix"
309    
310    #define MATRIX_VALID_CHMfactor "dCHMsuper", "dCHMsimpl", "nCHMsuper", "nCHMsimpl"
311    
312  /**  /**
313   * Return the 0-based index of a string match in a vector of strings   * Return the 0-based index of a string match in a vector of strings
314   * terminated by an empty string.  Returns -1 for no match.   * terminated by an empty string.  Returns -1 for no match.
# Line 261  Line 319 
319   * @return index of match or -1 for no match   * @return index of match or -1 for no match
320   */   */
321  static R_INLINE int  static R_INLINE int
322  Matrix_check_class(const char *class, char **valid)  Matrix_check_class(char *class, const char **valid)
323  {  {
324      int ans;      int ans;
325      for (ans = 0; ; ans++) {      for (ans = 0; ; ans++) {
# Line 271  Line 329 
329  }  }
330    
331  /**  /**
332   * Return the 0-based index of a match in a vector of class-name strings   * These are the ones "everyone" should use -- is() versions, also looking
333   * terminated by an empty string.  Returns -1 for no match.   * at super classes:
  *  
  * @param x  an R object, potentially with  is(x, <someClass>)  
  * @param valid vector of possible matches terminated by an empty string.  
  * @param rho  the environment in which the class definitions exist.  
  *  
  * @return index of match or -1 for no match  
334   */   */
335  static R_INLINE int  # define Matrix_check_class_etc R_check_class_etc
336  Matrix_check_class_and_super(SEXP x, char **valid, SEXP rho)  # define Matrix_check_class_and_super R_check_class_and_super
337  {  
338      int ans;  /** Accessing  *sparseVectors :  fast (and recycling)  v[i] for v = ?sparseVector:
339      SEXP cl = getAttrib(x, R_ClassSymbol);   * -> ./sparseVector.c  -> ./t_sparseVector.c :
340      char *class = strdup(CHAR(asChar(cl)));   */
341      for (ans = 0; ; ans++) {  // Type_ans sparseVector_sub(int64_t i, int nnz_v, int* v_i, Type_ans* v_x, int len_v):
342          if (!strlen(valid[ans]))  
343              break;  /* Define all of
344          if (!strcmp(class, valid[ans])) return ans;   *  dsparseVector_sub(....)
345      }   *  isparseVector_sub(....)
346      /* if not found directly, now search the non-virtual super classes :*/   *  lsparseVector_sub(....)
347      if(IS_S4_OBJECT(x)) {   *  nsparseVector_sub(....)
348          /* now try the superclasses, i.e.,  try   is(x, "....") : */   *  zsparseVector_sub(....)
349          SEXP classDef = eval(lang2(install("getClassDef"), cl), rho),   */
350              superCl   = eval(lang2(install("nonVirtualSuperClasses"), classDef),  #define _dspV_
351                               rho);  #include "t_sparseVector.c"
352          int i;  
353          const char *s_class;  #define _ispV_
354          for(i=0; i < length(superCl); i++) {  #include "t_sparseVector.c"
355              s_class = CHAR(STRING_ELT(superCl, i));  
356              for (ans = 0; ; ans++) {  #define _lspV_
357                  if (!strlen(valid[ans]))  #include "t_sparseVector.c"
358                      break;  
359                  if (!strcmp(s_class, valid[ans])) return ans;  #define _nspV_
360              }  #include "t_sparseVector.c"
361          }  
362      }  #define _zspV_
363      return -1;  #include "t_sparseVector.c"
 }  
364    
365    
366  #ifdef __cplusplus  #ifdef __cplusplus

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