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Revision 3242 - Directory Listing
Modified Thu Nov 16 08:01:50 2017 UTC (4 weeks, 1 day ago) by mmaechler
space after '-f' required by POSIX


Revision 3239 - Directory Listing
Modified Fri Nov 10 15:48:19 2017 UTC (5 weeks ago) by mmaechler
use Authors@R; "solve(-m)"; update TODO

Revision 3234 - Directory Listing
Modified Fri Nov 10 11:29:02 2017 UTC (5 weeks ago) by mmaechler
patch from Tomas. Goal to work in Windows with spaces in dirnames,etc

Revision 3233 - Directory Listing
Modified Sat Sep 30 08:43:58 2017 UTC (2 months, 2 weeks ago) by mmaechler
destructive_CHM_update() call in R has been documented to return NULL - faster, too

Revision 3221 - Directory Listing
Modified Mon Aug 7 20:31:15 2017 UTC (4 months, 1 week ago) by mmaechler
finally fix the  qr.coef() - permuted names -- bug

Revision 3215 - Directory Listing
Modified Wed Apr 19 08:46:28 2017 UTC (7 months, 3 weeks ago) by mmaechler
2x use Memcpy() instead of for()  [fixing __old__ FIXME]

Revision 3214 - Directory Listing
Modified Wed Apr 19 08:37:08 2017 UTC (7 months, 3 weeks ago) by mmaechler
+ one forgotten UNPROTECT(1); + more to avoid FP "rprotect"

Revision 3213 - Directory Listing
Modified Tue Apr 18 20:14:20 2017 UTC (7 months, 3 weeks ago) by mmaechler
more PROTECT()ing thanks to Tomas` "rprotect" analysis

Revision 3212 - Directory Listing
Modified Tue Apr 18 19:03:59 2017 UTC (7 months, 4 weeks ago) by mmaechler
rather include R_ext/RS.h  than doing our own #define Memzero -- (thanks to Peter Dalgaard)

Revision 3204 - Directory Listing
Modified Tue Feb 7 11:17:03 2017 UTC (10 months, 1 week ago) by mmaechler
indexing of sparseMatrix with NA-containing logical: error instead of segfault; 
TODO!; as(<diagonal>, "dense*"), cosmetic

Revision 3199 - Directory Listing
Modified Mon Jan 16 15:54:58 2017 UTC (10 months, 4 weeks ago) by mmaechler
SuiteSparse_long: --> int64_t  -- also in API export

Revision 3198 - Directory Listing
Modified Mon Jan 16 15:47:03 2017 UTC (10 months, 4 weeks ago) by mmaechler
SuiteSparse_long: #include <inttypes.h> and use int64_t on all platforms

Revision 3194 - Directory Listing
Modified Wed Nov 23 07:39:14 2016 UTC (12 months, 3 weeks ago) by mmaechler
patch for LU-solve for the degenerate/singular case - as necessary from R ALTREP branch

Revision 3192 - Directory Listing
Modified Tue Sep 27 13:23:32 2016 UTC (14 months, 2 weeks ago) by mmaechler
cosmetic; intermediate release Version 1.2-7.2

Revision 3190 - Directory Listing
Modified Tue Sep 27 13:07:12 2016 UTC (14 months, 2 weeks ago) by mmaechler
ensure *not* calling LENGTH(<NULL>)	{thanks to Luke Tierney}

Revision 3186 - Directory Listing
Modified Mon Aug 29 17:35:16 2016 UTC (15 months, 2 weeks ago) by mmaechler
_POSIX_C_SOURCE declaration  only if __GLIBC__   (hint from BDR)

Revision 3185 - Directory Listing
Modified Sat Aug 27 10:11:27 2016 UTC (15 months, 2 weeks ago) by mmaechler
update for releasing 1.2-7

Revision 3182 - Directory Listing
Modified Mon Aug 8 06:49:00 2016 UTC (16 months, 1 week ago) by mmaechler
ensure strdup() is "seen" (with glibc and strict 'std') -- thanks to Brian Ripley

Revision 3167 - Directory Listing
Modified Sat Apr 9 21:52:14 2016 UTC (20 months ago) by mmaechler
- fix  Diagonal(.) %*%  0-extent dense
- fast isSymmetric(<dense asymmetric large>)
- isSymmetric() now works for  "indMatrix"

Revision 3161 - Directory Listing
Modified Thu Feb 25 09:58:12 2016 UTC (21 months, 2 weeks ago) by mmaechler
as(<sparse>, "denseMatrix") working more often (but still not always! --> see FIXMEs in tests/Simple.R and src/Csparse.c

Revision 3160 - Directory Listing
Modified Tue Feb 23 17:44:54 2016 UTC (21 months, 3 weeks ago) by mmaechler
fix integer-product overflow bug in as(*, "matrix")

Revision 3147 - Directory Listing
Modified Thu Oct 29 16:56:10 2015 UTC (2 years, 1 month ago) by mmaechler
really deprecate (and no longer use ourselves!) {M_}Matrix_check_class_etc()

Revision 3143 - Directory Listing
Modified Wed Sep 2 21:29:32 2015 UTC (2 years, 3 months ago) by mmaechler
export MatrixClass() - and use e.g., in "Math", fixing bug in n.CMatrix treatment for "extended" class; similarly fix as(<>, *) for that case

Revision 3142 - Directory Listing
Modified Wed Sep 2 21:23:29 2015 UTC (2 years, 3 months ago) by mmaechler
new MATRIX_VALID_nCsparse

Revision 3137 - Directory Listing
Modified Wed Aug 5 16:22:25 2015 UTC (2 years, 4 months ago) by mmaechler
move the alloca (re-)definition after the #include block {needed for Jan DeLeeuw's clang}

Revision 3135 - Directory Listing
Modified Tue Jul 21 13:38:36 2015 UTC (2 years, 4 months ago) by mmaechler
alloca declaration (for Solaris, AIX) also in include/Matrix.h; and *before* #include <stdlib.h> (hint in e-mail from Brian)

Revision 3128 - Directory Listing
Modified Tue Jun 2 08:08:16 2015 UTC (2 years, 6 months ago) by mmaechler
open version 1.2-2; now names( colSums() ) are as in "base"

Revision 3120 - Directory Listing
Modified Fri May 29 14:51:08 2015 UTC (2 years, 6 months ago) by mmaechler
fix crossprod(<matrix>, Diagonal(<n>)) and many such cases; also "dtrMatrix" ones.
 => also fix Matrix(<named diag>) losing dimnames.
Pretty systematic testing of matrix products including dimnames

Revision 3115 - Directory Listing
Modified Tue May 19 16:34:46 2015 UTC (2 years, 6 months ago) by mmaechler
lu() and qr() now keep dimnames, i.e. propagate them to the factorization, at least for sparse Matrices; not quite ok for sparseQR yet

Revision 3114 - Directory Listing
Modified Tue May 19 16:33:13 2015 UTC (2 years, 6 months ago) by mmaechler
new C utilities dim_validate(), Dim_validate() and  dimNames_validate();
MatrixFactorization class gets `Dimnames`;
new MatrixFactorization_validate();
save install()ed symbols for "beta" and "V"

Revision 3105 - Directory Listing
Modified Fri May 8 06:48:01 2015 UTC (2 years, 7 months ago) by mmaechler
use SMALL_4_Alloca := 10000 and new C_or_Alloca_TO() macro instead of Alloca() ==> Will not call Alloca for large amounts of memory - as that can seg.fault

Revision 3103 - Directory Listing
Modified Fri May 8 06:44:54 2015 UTC (2 years, 7 months ago) by mmaechler
standardize the R_alloc() uses to (n, sizeof(.))

Revision 3102 - Directory Listing
Modified Thu May 7 16:17:16 2015 UTC (2 years, 7 months ago) by mmaechler
remove "..only_for_old_graph_package" code

Revision 3101 - Directory Listing
Modified Thu May 7 16:17:07 2015 UTC (2 years, 7 months ago) by mmaechler
remove "..only_for_old_graph_package" code

Revision 3099 - Directory Listing
Modified Mon May 4 15:09:25 2015 UTC (2 years, 7 months ago) by mmaechler
fix the  x[] <- <sparse>  bug found by Peter Ralph

Revision 3092 - Directory Listing
Modified Thu Apr 2 10:56:59 2015 UTC (2 years, 8 months ago) by mmaechler
more using of ..2dge() and anyNA(); 
testing %&% in test-tools  checkMatrix()

Revision 3081 - Directory Listing
Modified Wed Apr 1 07:52:58 2015 UTC (2 years, 8 months ago) by mmaechler
R-forge feature request #6064: providing cholmod_solve2()

Revision 3079 - Directory Listing
Modified Tue Mar 31 15:29:43 2015 UTC (2 years, 8 months ago) by mmaechler
full (hope ! ;-) support for [t]crossprod(*, boolArith=TRUE)

Revision 3078 - Directory Listing
Modified Tue Mar 31 15:27:56 2015 UTC (2 years, 8 months ago) by mmaechler
Newly .Call()able geMatrix_crossprod, geMatrix_geMatrix_crossprod, geMatrix_matrix_crossprod, geMatrix_matrix_mm -- for faster dense matrix products, e.g. for "ngeMatrix", "nsyMatrix", etc

Revision 3076 - Directory Listing
Modified Mon Mar 30 10:23:42 2015 UTC (2 years, 8 months ago) by mmaechler
Csparse_crossprod(x, *) now work when `x` is symmetricMatrix;
more (doxygen) comments

Revision 3072 - Directory Listing
Modified Fri Mar 27 15:10:48 2015 UTC (2 years, 8 months ago) by mmaechler
advances in boolean arithmetic matrix products: 
%&% and [t]crossprod(*, boolArith = *)

Revision 3069 - Directory Listing
Modified Thu Mar 26 10:00:49 2015 UTC (2 years, 8 months ago) by mmaechler
Fixed FIXME: Csparse o dense - matrix products: now *all*  t() happen in C,
partly thanks to our new  chm_transpose_dense() function.
Csparse o Csparse : now have `boolArith` argument {not entirely finished}
New %&% : Boolean Arithmetic Matrix products      {not entirely finished}
C level: <sparse pattern> o <sparse numeric> : now return numeric "by default" / pattern "on demand"

Revision 3066 - Directory Listing
Modified Thu Mar 19 14:27:05 2015 UTC (2 years, 8 months ago) by mmaechler
rbind2(<dense>, <dense>) use new C R_rbind_vector()

Revision 3059 - Directory Listing
Modified Mon Mar 16 17:40:18 2015 UTC (2 years, 9 months ago) by mmaechler
export and speedup  uniqTsparse(); also export anyDuplicatedT()
Improve the documentation about "non-unique Tsparse" matrices etc.
next Version: 1.2-0

Revision 3055 - Directory Listing
Modified Sat Mar 14 21:12:03 2015 UTC (2 years, 9 months ago) by mmaechler
symmetric Matrices -- allow to have dimnames list(NULL, <names>) or list(<names>, NULL) 
and print correctly and are coerced correctly to general matrices etc.
More use of new  stopifnotValid() in tests/

Revision 3054 - Directory Listing
Modified Sat Mar 14 20:57:39 2015 UTC (2 years, 9 months ago) by mmaechler
diag(.) <- val  did not recycle `val` e.g. for dtrMatrix

Revision 3040 - Directory Listing
Modified Mon Jan 19 10:04:23 2015 UTC (2 years, 10 months ago) by mmaechler
+- = CRAN version 1.1-5:  Momentarily reverting BACK to old SuiteSparce [no Windows 32 bit seg.fault]

Revision 3036 - Directory Listing
Modified Sat Jan 17 23:06:12 2015 UTC (2 years, 10 months ago) by mmaechler
fix the partially wrong dimnames(solve(<dtCMatrix>, <matrix>))

Revision 3035 - Directory Listing
Modified Sat Jan 17 10:59:31 2015 UTC (2 years, 10 months ago) by mmaechler
oops: rm "svn conflict" mess

Revision 3033 - Directory Listing
Modified Fri Jan 16 15:47:57 2015 UTC (2 years, 10 months ago) by mmaechler
export a wrapper of the dgCMatrix_cholsol and dgCMatrix_qrsol C functions used in package MatrixModels

Revision 3032 - Directory Listing
Modified Fri Jan 16 15:46:04 2015 UTC (2 years, 10 months ago) by mmaechler
fix the rowMeans(<dgeMatrix>, na.rm=TRUE) bug, reported by Peter Ralph

Revision 3025 - Directory Listing
Modified Tue Dec 23 22:57:48 2014 UTC (2 years, 11 months ago) by mmaechler
upgrade to SparseSuite 4.4.1

Revision 3024 - Directory Listing
Modified Tue Dec 23 11:27:41 2014 UTC (2 years, 11 months ago) by mmaechler
Update to  Tim Davis'  move from U Florida (ufl.edu) to
 Texas A&M (tamu.edu).
URLs seem to work -- but wget'ing the  SuiteSparse-4.4.1.tar.gz
file  { 25479686 (24M) [application/x-gzip] }
is telling me about an expected arrival time of around 4 hours (!!)

Is someone boycotting non-US countries ... or the R project or ???

{yes, this is joking; I'm not yet paranoid, but still very much puzzled}

Revision 3023 - Directory Listing
Modified Sat Dec 20 22:29:49 2014 UTC (2 years, 11 months ago) by mmaechler
tril() and triu() now return correct uplo (if at all)

Revision 3020 - Directory Listing
Modified Tue Oct 14 16:14:02 2014 UTC (3 years, 2 months ago) by mmaechler
dimnames(), notably names(dimnames()) -- primarily in connection with symmpart(), skewpart() and forceSymmetric()

Revision 3019 - Directory Listing
Modified Sat Oct 11 20:51:53 2014 UTC (3 years, 2 months ago) by mmaechler
thinko

Revision 3018 - Directory Listing
Modified Sat Oct 11 17:52:10 2014 UTC (3 years, 2 months ago) by mmaechler
Fix remaining parts of R-(3.2.0) compatible behavior of matrix products (%*%, [t]crossprod) -- including previous bug of wrong m %*% v in one case

Revision 3014 - Directory Listing
Modified Tue Oct 7 09:00:31 2014 UTC (3 years, 2 months ago) by mmaechler
CHMfactor has no dimnames

Revision 3011 - Directory Listing
Modified Mon Oct 6 17:00:48 2014 UTC (3 years, 2 months ago) by mmaechler
misc. matrix-product related cleanups

Revision 3010 - Directory Listing
Modified Mon Oct 6 16:59:57 2014 UTC (3 years, 2 months ago) by mmaechler
fixing R-forge Matrix bug #5933 (matrix-matrix prod with 0-extents)
R-(3.2.0) compatible behavior of matrix products (%*%, [t]crossprod), now at least for
sparseVectors

Revision 3008 - Directory Listing
Modified Wed Oct 1 18:33:43 2014 UTC (3 years, 2 months ago) by mmaechler
start using Memzero() instead of AZERO() {as in R`s source}

Revision 3007 - Directory Listing
Modified Wed Oct 1 18:28:04 2014 UTC (3 years, 2 months ago) by mmaechler
correct the incomplete fix of r3003

Revision 3004 - Directory Listing
Modified Fri Sep 5 15:45:32 2014 UTC (3 years, 3 months ago) by mmaechler
R_alloc(.,.)  arguments swapped -- why did this never bite ??

Revision 3003 - Directory Listing
Modified Tue Sep 2 06:39:24 2014 UTC (3 years, 3 months ago) by mmaechler
make cs_randperm() using R`s RNG [CRAN checks]

Revision 3001 - Directory Listing
Modified Mon Sep 1 15:30:54 2014 UTC (3 years, 3 months ago) by mmaechler
got (and patched) new SparseSuite code -- with changed (a bit simplified) headers

Revision 2997 - Directory Listing
Modified Thu Aug 7 18:47:11 2014 UTC (3 years, 4 months ago) by mmaechler
forgotten for r2996: no longer needing d(sy|tr)Matrix_validate()

Revision 2996 - Directory Listing
Modified Thu Aug 7 18:44:26 2014 UTC (3 years, 4 months ago) by mmaechler
do validity checks using  dense_nonpacked_validate directly

Revision 2995 - Directory Listing
Modified Thu Jul 24 08:40:46 2014 UTC (3 years, 4 months ago) by mmaechler
invPerm(p) now coerces p to int. if needed

Revision 2990 - Directory Listing
Modified Thu May 8 10:31:52 2014 UTC (3 years, 7 months ago) by mmaechler
fix crossprod(<vec>, <dsyMatrix>) bug, sent from David Ruegamer, LMU.
Keep dimnames in (some more of) such products

Revision 2987 - Directory Listing
Modified Sat Apr 26 19:14:30 2014 UTC (3 years, 7 months ago) by mmaechler
new rsparsematrix() {with 'encoding trick'} for random sparse matrices;  
m_encodeInd[2]?() gains new argument 'orig_1'

Revision 2986 - Directory Listing
Modified Sat Apr 12 22:21:14 2014 UTC (3 years, 8 months ago) by mmaechler
.set.factors(x, *) now also works when 'x' has no 'factors' slot

Revision 2984 - Directory Listing
Modified Sat Apr 12 21:37:37 2014 UTC (3 years, 8 months ago) by mmaechler
chol(), Cholesky() {and some remnant rcond()...} updates, thanks to Roger Bivand`s questions

Revision 2981 - Directory Listing
Modified Thu Mar 27 10:01:42 2014 UTC (3 years, 8 months ago) by mmaechler
fix typo in changed message in dtrMatrix.c

Revision 2980 - Directory Listing
Modified Thu Mar 27 09:30:57 2014 UTC (3 years, 8 months ago) by mmaechler
collect translators (for e-mail); not using "dtrMatrices" for better translations

Revision 2978 - Directory Listing
Modified Wed Mar 26 18:17:09 2014 UTC (3 years, 8 months ago) by mmaechler
using .hasSlot() is faster than checking for "compMatrix"

Revision 2976 - Directory Listing
Modified Tue Mar 25 12:41:40 2014 UTC (3 years, 8 months ago) by mmaechler
+ comments

Revision 2960 - Directory Listing
Modified Tue Jan 28 15:34:21 2014 UTC (3 years, 10 months ago) by mmaechler
A few things at once:
1) all.equal(*,..): "tolerance" instead of "tol";  "check.attributes"
2) All matrix products (%*%, [t]crossprod) in one new *.Rd file: man/matrix-products.Rd
3) R/products.R : Extend matrix products (and consistency tests) 
   a. to work with sparseVectors, 
   b. to correctly work in some cases they did not
   c. to be faster in other cases

Revision 2958 - Directory Listing
Modified Mon Jan 20 16:22:40 2014 UTC (3 years, 10 months ago) by mmaechler
Csparse_to_matrix(*, chk) --> also AS_CHM_SP2(.)

Revision 2945 - Directory Listing
Modified Thu Dec 19 13:52:00 2013 UTC (3 years, 11 months ago) by mmaechler
new check.gT2sT(); 
clean up in check.gT2tT(); 
more use of all0(.); 
some more coercions of n..Matrix

Revision 2938 - Directory Listing
Modified Mon Dec 16 22:51:12 2013 UTC (3 years, 11 months ago) by mmaechler
all0() and any0() now via .Call(R_all0,..)

Revision 2933 - Directory Listing
Modified Sun Nov 24 16:02:10 2013 UTC (4 years ago) by mmaechler
rankMatrix(); method="qr" as it is not related to LINPACK for the important case of sparse x:  It now uses *tol* to count non-zero entries in diag(R)

Revision 2930 - Directory Listing
Modified Mon Oct 21 10:02:21 2013 UTC (4 years, 1 month ago) by mmaechler
Version 1.1-0: as have C API change; class union "numIndex" is unused (and can harm, as it is not exported

Revision 2929 - Directory Listing
Modified Mon Sep 30 13:46:10 2013 UTC (4 years, 2 months ago) by mmaechler
add warning and svn diff Include/cholmod_core.h  to see if
    inst/include/cholmod.h
needs to be updated.

Revision 2920 - Directory Listing
Modified Mon Sep 16 16:23:42 2013 UTC (4 years, 2 months ago) by mmaechler
cosmetic on final text

Revision 2919 - Directory Listing
Modified Mon Sep 16 15:59:16 2013 UTC (4 years, 2 months ago) by mmaechler
remove gpl.txt

Revision 2918 - Directory Listing
Modified Mon Sep 16 15:58:20 2013 UTC (4 years, 2 months ago) by mmaechler
remove lpgl "lesser" files; ChangeLogs that are rather in ../inst/doc/

Revision 2917 - Directory Listing
Modified Mon Sep 16 14:30:45 2013 UTC (4 years, 2 months ago) by mmaechler
cosmetic in the "auto-update" sh scripts

Revision 2916 - Directory Listing
Modified Mon Sep 16 14:09:40 2013 UTC (4 years, 2 months ago) by mmaechler
new .SuiteSparse_version()

Revision 2915 - Directory Listing
Modified Mon Sep 16 14:09:21 2013 UTC (4 years, 2 months ago) by mmaechler
get latest SuiteSparse from Tim Davis, UFlorida (and patch, adapt..)

Revision 2914 - Directory Listing
Modified Mon Sep 16 14:07:11 2013 UTC (4 years, 2 months ago) by mmaechler
new download+patch script; adapt some *.patch files

Revision 2913 - Directory Listing
Modified Mon Sep 16 09:54:19 2013 UTC (4 years, 3 months ago) by mmaechler
improve "printf" patch: (void), not (int)

Revision 2901 - Directory Listing
Modified Tue Sep 10 10:45:25 2013 UTC (4 years, 3 months ago) by mmaechler
new  Csparse_to_vector() in C --> faster as(*, "vector") methods

Revision 2898 - Directory Listing
Modified Mon Sep 2 15:48:30 2013 UTC (4 years, 3 months ago) by mmaechler
3 new C-->R utilities; notably R_set_factors() -> .set.factors() for caching also from R, not just in C

Revision 2889 - Directory Listing
Modified Thu Aug 8 21:06:22 2013 UTC (4 years, 4 months ago) by mmaechler
Provide  sparse solve() methods for <dgCMatrix> that work via LU decomp.
"Cheap" fix for the lu() -> sometimes/occasionally unsorted columns in resulting L / U matrix bug:
In C, have new  Csparse_sort2(.) version of Csparse_validate() and in 
R a .sortCsparse(.) using .Call(Csparse_sort, x) -- seems to work ok... but want tests and docu;
also can be quite a bit more efficient already in C; -- TODOs

Revision 2886 - Directory Listing
Modified Wed Jul 31 08:33:52 2013 UTC (4 years, 4 months ago) by mmaechler
new optional argument  conv.norm.type="I" 

Revision 2879 - Directory Listing
Modified Tue Jun 18 07:01:11 2013 UTC (4 years, 5 months ago) by mmaechler
use  lengthgets()  instead of SETLENGTH(): 
[=> advantage: names are dealt with automatically]

Revision 2868 - Directory Listing
Modified Sat Feb 2 19:38:06 2013 UTC (4 years, 10 months ago) by mmaechler
now *warn*, when Q is needed in the "struct.rank deficient" case

Revision 2867 - Directory Listing
Modified Sat Feb 2 18:31:28 2013 UTC (4 years, 10 months ago) by mmaechler
Schur(m) now also works for a traditional matrix m

Revision 2866 - Directory Listing
Modified Wed Jan 30 17:09:10 2013 UTC (4 years, 10 months ago) by mmaechler
correct #{arguments} for External Mmatrix

Revision 2864 - Directory Listing
Modified Tue Jan 29 21:45:16 2013 UTC (4 years, 10 months ago) by mmaechler
mini patch for "race condition" bug with parallel make: https://r-forge.r-project.org/tracker/?func=detail&atid=294&aid=1723&group_id=61]

Revision 2860 - Directory Listing
Modified Mon Dec 31 14:35:37 2012 UTC (4 years, 11 months ago) by mmaechler
(comments only)

Revision 2858 - Directory Listing
Modified Mon Dec 31 10:03:19 2012 UTC (4 years, 11 months ago) by mmaechler
be sure to obey 'dofree'  also in error(..) signalling cases.
(thanks to Henrik Friberg's notice)

Revision 2854 - Directory Listing
Modified Thu Nov 22 07:54:41 2012 UTC (5 years ago) by mmaechler
qr(<sparse>) --> <sparseQR> : finally address the structurally rank-deficient case where cs_sqr() produces "spurious" extra rows in Q i.e. V, and R; add checking code for that case

Revision 2853 - Directory Listing
Modified Thu Nov 22 07:52:08 2012 UTC (5 years ago) by mmaechler
provide fast C version and export  invPerm()

Revision 2851 - Directory Listing
Modified Mon Nov 12 14:17:09 2012 UTC (5 years, 1 month ago) by mmaechler
 as(<csr>, "dgCMatrix") works again; Matrix now *runs* in older R even if installed in R >= 2.15.2

Revision 2850 - Directory Listing
Modified Mon Oct 22 13:00:35 2012 UTC (5 years, 1 month ago) by mmaechler
an extra check needed for R-devel (2.16.0) on 32-bit Windows

Revision 2849 - Directory Listing
Modified Sat Oct 20 09:15:33 2012 UTC (5 years, 1 month ago) by mmaechler
cannot use R_SVN_REVISION (inside #if ..) yet

Revision 2848 - Directory Listing
Modified Fri Oct 19 15:17:02 2012 UTC (5 years, 1 month ago) by mmaechler
use R_SVN_REVISION (instead of less precise R_VERSION)

Revision 2846 - Directory Listing
Modified Thu Oct 18 22:08:32 2012 UTC (5 years, 1 month ago) by mmaechler
declare La_norm_type / La_rcond_type

Revision 2845 - Directory Listing
Modified Tue Oct 16 07:01:14 2012 UTC (5 years, 2 months ago) by mmaechler
update (before release)

Revision 2843 - Directory Listing
Modified Mon Oct 15 16:15:05 2012 UTC (5 years, 2 months ago) by mmaechler
using .External(Mmatrix, ...) instead of .Internal(matrix(...))

Revision 2834 - Directory Listing
Modified Mon Sep 3 10:30:03 2012 UTC (5 years, 3 months ago) by mmaechler
fix a "too early UNPROTECT()" from Andrew Runnalls

Revision 2830 - Directory Listing
Modified Fri Aug 31 23:31:32 2012 UTC (5 years, 3 months ago) by mmaechler
try disabling SparseSuite_time() "timer" by defining NTIMER

Revision 2817 - Directory Listing
Modified Sat Aug 11 23:41:46 2012 UTC (5 years, 4 months ago) by mmaechler
forceSymmetric(<non-square>) gives easier error msg

Revision 2814 - Directory Listing
Modified Tue Jul 24 14:02:28 2012 UTC (5 years, 4 months ago) by mmaechler
more Ops are checked and work; new is.finite() and is.infinite() methods (+ checks for them)

Revision 2811 - Directory Listing
Modified Mon Jul 16 15:50:31 2012 UTC (5 years, 5 months ago) by mmaechler
denseMatrix methods for  'diag<-' which preserve (uni)triangularity, symmetry,
etc and are fast via C *_setDiag() functions.
Further, more Ops, e.g. preserving symmetry for  <symmetric> o <diagonal>

Revision 2805 - Directory Listing
Modified Sat Jun 30 17:25:45 2012 UTC (5 years, 5 months ago) by mmaechler
more as(.,.) methods keep dimnames

Revision 2804 - Directory Listing
Modified Thu Jun 28 13:45:01 2012 UTC (5 years, 5 months ago) by dmbates
Patch for problem with definition of strdup.

Revision 2803 - Directory Listing
Modified Tue Jun 26 20:13:08 2012 UTC (5 years, 5 months ago) by dmbates
More tweaking Makefiles, etc.  This version will install on my system.

Revision 2802 - Directory Listing
Modified Tue Jun 26 18:38:59 2012 UTC (5 years, 5 months ago) by dmbates
Stay with the old organization

Revision 2799 - Directory Listing
Modified Wed Jun 20 17:35:50 2012 UTC (5 years, 5 months ago) by dmbates
Remove src/UFconfig directory

Revision 2798 - Directory Listing
Modified Wed Jun 20 17:17:57 2012 UTC (5 years, 5 months ago) by dmbates
SuiteSparse-4.0.0 (not yet compiling)

Revision 2797 - Directory Listing
Modified Wed Jun 20 15:31:41 2012 UTC (5 years, 5 months ago) by dmbates
Adjust script to location in Matrix/src/scripts

Revision 2796 - Directory Listing
Modified Tue Jun 19 22:32:37 2012 UTC (5 years, 5 months ago) by dmbates


Revision 2795 - Directory Listing
Modified Tue Jun 19 22:29:52 2012 UTC (5 years, 5 months ago) by dmbates
Create AMD/Lib

Revision 2794 - Directory Listing
Modified Tue Jun 19 22:27:37 2012 UTC (5 years, 5 months ago) by dmbates
Rename UFconfig to SuiteSparse_config

Revision 2793 - Directory Listing
Modified Tue Jun 19 22:25:35 2012 UTC (5 years, 5 months ago) by dmbates
Rename UFconfig to SuiteSparse_config

Revision 2792 - Directory Listing
Modified Tue Jun 19 22:23:32 2012 UTC (5 years, 5 months ago) by dmbates
Rename UFconfig to SuiteSparse_config, create AMD/Lib directory

Revision 2791 - Directory Listing
Modified Tue Jun 19 21:33:40 2012 UTC (5 years, 5 months ago) by dmbates
Modifications to scripts for SuiteSparse (not yet complete)

Revision 2790 - Directory Listing
Modified Tue Jun 19 19:39:30 2012 UTC (5 years, 5 months ago) by dmbates
CSparse from SuiteSparse 4.0.0 and modifications to scripts for this version.

Revision 2787 - Directory Listing
Modified Wed Jun 13 12:26:13 2012 UTC (5 years, 6 months ago) by mmaechler
ensure dimnames are kept in %*% and [t]crossprod() in all (?) cases.

Revision 2786 - Directory Listing
Modified Wed Jun 13 12:11:37 2012 UTC (5 years, 6 months ago) by mmaechler
remove "old" R_VERSION dependencies

Revision 2784 - Directory Listing
Modified Fri Jun 8 17:01:25 2012 UTC (5 years, 6 months ago) by mmaechler
update(Cholesky(.), <dgCMatrix>) now warns and coerces;
many small comments and some more docu for Cholesky() and update(); --> TODO

Revision 2783 - Directory Listing
Modified Wed Jun 6 06:53:52 2012 UTC (5 years, 6 months ago) by mmaechler
More docs/examples on chol()/Cholesky()
 new chk.s() "check dots" utility

Revision 2780 - Directory Listing
Modified Wed Apr 18 12:20:47 2012 UTC (5 years, 7 months ago) by mmaechler
new  updown() [interface to CHOLMOD_updown] for up-/down-dating a Cholesky decomposition

Revision 2776 - Directory Listing
Modified Fri Mar 30 16:38:10 2012 UTC (5 years, 8 months ago) by mmaechler
PROTECT()++ thanks to Andrew Runnalls

Revision 2772 - Directory Listing
Modified Wed Mar 7 13:47:37 2012 UTC (5 years, 9 months ago) by mmaechler
add missing PROTECT in  Csparse_diagN2U()

Revision 2770 - Directory Listing
Modified Mon Mar 5 13:41:23 2012 UTC (5 years, 9 months ago) by mmaechler
fix solve(<dtCMatrix>) seg.fault by using Calloc() instead of Alloca() .. hmm

Revision 2766 - Directory Listing
Modified Fri Feb 24 23:54:44 2012 UTC (5 years, 9 months ago) by mmaechler
plug memory leak (only in error case!) reported by Kasper Kristensen

Revision 2763 - Directory Listing
Modified Fri Feb 3 20:07:35 2012 UTC (5 years, 10 months ago) by mmaechler
(cosmetic): testing svn / R-forge

Revision 2759 - Directory Listing
Modified Wed Jan 18 19:47:32 2012 UTC (5 years, 10 months ago) by dmbates
Correct the calculation of nonzero indices for row-major sparse matrices.

Revision 2757 - Directory Listing
Modified Fri Jan 13 11:57:51 2012 UTC (5 years, 11 months ago) by mmaechler
finally got rid of remaining printf(); and updated patch files/scripts

Revision 2756 - Directory Listing
Modified Fri Jan 13 10:40:13 2012 UTC (5 years, 11 months ago) by mmaechler
revert 2751 (Rprintf) - will solve via cs.h

Revision 2755 - Directory Listing
Modified Fri Jan 13 09:38:48 2012 UTC (5 years, 11 months ago) by mmaechler
rm

Revision 2754 - Directory Listing
Modified Fri Jan 13 09:37:01 2012 UTC (5 years, 11 months ago) by mmaechler
make printf() be Rprintf()

Revision 2753 - Directory Listing
Modified Fri Jan 13 09:16:12 2012 UTC (5 years, 11 months ago) by mmaechler
disable printf() for AMD

Revision 2752 - Directory Listing
Modified Fri Jan 13 08:55:27 2012 UTC (5 years, 11 months ago) by mmaechler
use Rprintf, not printf

Revision 2751 - Directory Listing
Modified Fri Jan 13 08:55:12 2012 UTC (5 years, 11 months ago) by mmaechler
use Rprintf, not printf

Revision 2744 - Directory Listing
Modified Fri Dec 30 18:51:18 2011 UTC (5 years, 11 months ago) by mmaechler
Matrix_check_class_etc() has been in R-devel for a while now;
NAMESPACE imports for border line situation

Revision 2731 - Directory Listing
Modified Mon Oct 17 18:07:09 2011 UTC (6 years, 2 months ago) by dmbates
Free the general copy of a symmetric argument to Csparse_submatrix

Revision 2725 - Directory Listing
Modified Sat Oct 8 19:48:44 2011 UTC (6 years, 2 months ago) by mmaechler
cbind2() and rbind2() methods for the mix of sparse & dense

Revision 2723 - Directory Listing
Modified Fri Oct 7 12:41:20 2011 UTC (6 years, 2 months ago) by mmaechler
as_cholmod_triplet should also be callable - filling the quartet

Revision 2722 - Directory Listing
Modified Thu Oct 6 15:52:30 2011 UTC (6 years, 2 months ago) by mmaechler
doxygen "fixes"

Revision 2717 - Directory Listing
Modified Tue Oct 4 08:01:18 2011 UTC (6 years, 2 months ago) by mmaechler
ready for 1.0-0

Revision 2714 - Directory Listing
Modified Tue Sep 27 14:55:52 2011 UTC (6 years, 2 months ago) by mmaechler
improved error msgs

Revision 2713 - Directory Listing
Modified Sat Sep 17 10:17:24 2011 UTC (6 years, 3 months ago) by mmaechler
make Matrix_check_class_etc callable from other packages C code

Revision 2710 - Directory Listing
Modified Fri Sep 16 14:42:36 2011 UTC (6 years, 3 months ago) by mmaechler
define NPRINT -- so CHOLMOD should not print (to STDERR, etc) anymore.
after all, our error handler should get things

Revision 2707 - Directory Listing
Modified Sat Sep 3 14:51:03 2011 UTC (6 years, 3 months ago) by mmaechler
get rid of "set but unused" warnings from gcc 4.6.0

Revision 2700 - Directory Listing
Modified Fri Aug 12 20:53:54 2011 UTC (6 years, 4 months ago) by mmaechler
change the last (of three) instances where  REAL |-> LOGICAL 
hadn't been careful about NaN |-> NA
-- as in r2556 (by Brian Ripley -- triggered on Sparc Solaris)

Revision 2693 - Directory Listing
Modified Tue Aug 9 14:16:28 2011 UTC (6 years, 4 months ago) by mmaechler
do not use GNU-make-isms in Makefile

Revision 2692 - Directory Listing
Modified Mon Aug 8 18:38:02 2011 UTC (6 years, 4 months ago) by mmaechler
update+comments

Revision 2685 - Directory Listing
Modified Fri Aug 5 19:52:10 2011 UTC (6 years, 4 months ago) by mmaechler
mv inclusion of <stdint.h> to Mutils.h, so it is also seen from t_sparseVector.c

Revision 2684 - Directory Listing
Modified Fri Aug 5 15:17:26 2011 UTC (6 years, 4 months ago) by mmaechler
<Csparse>[..] <- val   now goes via .Call()

Revision 2683 - Directory Listing
Modified Fri Aug 5 09:49:49 2011 UTC (6 years, 4 months ago) by mmaechler
modularize sublibs {in order to shortcut 2-platform development}

Revision 2681 - Directory Listing
Modified Mon Aug 1 20:43:16 2011 UTC (6 years, 4 months ago) by mmaechler
Csparse_subassign() now also for dtCMatrix

Revision 2678 - Directory Listing
Modified Sat Jun 25 19:19:19 2011 UTC (6 years, 5 months ago) by mmaechler
finish: functionality of sparseVector.c now as "R_INLINE" in Mutils.h

Revision 2677 - Directory Listing
Modified Sat Jun 25 19:18:12 2011 UTC (6 years, 5 months ago) by mmaechler
finally a working C level Csparse_subassign() - to solve the memory-explode issue .. *BUT* it`s still too slow, even if I never remove but use drop0(.) in the end ... commit now before South America ... in case I get hit by a truck :-)

Revision 2673 - Directory Listing
Modified Fri May 20 16:19:18 2011 UTC (6 years, 6 months ago) by mmaechler
fix det(Matrix(0,1)) bug \\ misc.

Revision 2666 - Directory Listing
Modified Thu Apr 7 14:06:32 2011 UTC (6 years, 8 months ago) by mmaechler
update the "UFsparse_download.sh" script; need new SparseM for example

Revision 2663 - Directory Listing
Modified Wed Apr 6 07:03:09 2011 UTC (6 years, 8 months ago) by mmaechler
sparseVector subsetting in C (not yet used)

Revision 2662 - Directory Listing
Modified Wed Apr 6 07:01:41 2011 UTC (6 years, 8 months ago) by mmaechler
added sparseVector.o  target

Revision 2661 - Directory Listing
Modified Wed Apr 6 06:55:54 2011 UTC (6 years, 8 months ago) by mmaechler
use standard UFlong (instead of UFlong := int hack); updated CHOLMOD/SparseSuite Jan. -- version 0.9996875-0

Revision 2658 - Directory Listing
Modified Wed Mar 30 14:31:36 2011 UTC (6 years, 8 months ago) by dmbates
Install symbols before using them in defineVar.

Revision 2654 - Directory Listing
Modified Thu Feb 24 07:47:52 2011 UTC (6 years, 9 months ago) by mmaechler
get newest versions of CHOLMOD etc from Tim Davis` site

Revision 2653 - Directory Listing
Modified Wed Feb 23 14:44:37 2011 UTC (6 years, 9 months ago) by mmaechler
expand(lu(<non-square dense>)) now works

Revision 2647 - Directory Listing
Modified Mon Feb 21 10:57:51 2011 UTC (6 years, 9 months ago) by mmaechler
remainder of using "const" for valid[] ..

Revision 2646 - Directory Listing
Modified Mon Feb 21 10:57:49 2011 UTC (6 years, 9 months ago) by mmaechler
use "(static) const char*" for the valid[] strings in Matrix_check_class_*()

Revision 2645 - Directory Listing
Modified Mon Feb 21 10:57:47 2011 UTC (6 years, 9 months ago) by mmaechler
R >= 2.10.0: ==> no longer needing Matrix_make_named(); R >= 2.13.0 will have R_check_class_and_super()

Revision 2629 - Directory Listing
Modified Sat Dec 11 18:50:49 2010 UTC (7 years ago) by mmaechler
as last rev: crossprod(<ngCMatrix>, <dense>);  etc

Revision 2628 - Directory Listing
Modified Sat Dec 11 16:56:51 2010 UTC (7 years ago) by mmaechler
fix <ngCMatrix> %*% <dense> -- providing fast C-based coercions

Revision 2626 - Directory Listing
Modified Mon Nov 29 08:17:49 2010 UTC (7 years ago) by mmaechler
no need for triggering C++ as linker - for the time being

Revision 2615 - Directory Listing
Modified Tue Aug 24 12:30:35 2010 UTC (7 years, 3 months ago) by mmaechler
m_encodeInd(ij, ..): thinko from rev. 2614

Revision 2614 - Directory Listing
Modified Tue Aug 24 10:12:37 2010 UTC (7 years, 3 months ago) by mmaechler
m_encodeInd(ij, ..): better error message for non-matrix 'ij'

Revision 2592 - Directory Listing
Modified Sun Aug 1 19:51:14 2010 UTC (7 years, 4 months ago) by mmaechler
efficient x[ -i ] for sparse vectors; "Enhances" MatrixModels

Revision 2586 - Directory Listing
Modified Sun Jul 25 02:32:06 2010 UTC (7 years, 4 months ago) by mmaechler
Copied from: pkg/src revision 2580
move Matrix/ directory "down"

Revision 2556 - Directory Listing
Modified Mon Jul 5 16:58:27 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/src
bug fixes for "!=", thanks to Ruth & Brian Ripley

Revision 2543 - Directory Listing
Modified Sat May 22 11:10:18 2010 UTC (7 years, 6 months ago) by dmbates
Original Path: pkg/src
Add const_CHM_SP, etc. argument declarations

Revision 2540 - Directory Listing
Modified Tue May 18 08:53:43 2010 UTC (7 years, 7 months ago) by mmaechler
Original Path: pkg/src
rBind(<lsparse>, <lsparse>) now is <lsparse>

Revision 2530 - Directory Listing
Modified Thu Apr 8 15:07:00 2010 UTC (7 years, 8 months ago) by mmaechler
Original Path: pkg/src
update CHOLMOD etc from Tim Davis -- using src/scripts/UFsparse_download.sh and CSparse_install.sh

Revision 2529 - Directory Listing
Modified Wed Mar 31 14:41:33 2010 UTC (7 years, 8 months ago) by mmaechler
Original Path: pkg/src
lm.fit.sparse(x,y, w, *) (+ weights!) etc

Revision 2528 - Directory Listing
Modified Tue Mar 30 17:26:12 2010 UTC (7 years, 8 months ago) by mmaechler
Original Path: pkg/src
typo in r2527

Revision 2527 - Directory Listing
Modified Tue Mar 30 17:22:44 2010 UTC (7 years, 8 months ago) by mmaechler
Original Path: pkg/src
enable sparse.model.matrix( ~ 1)

Revision 2525 - Directory Listing
Modified Wed Mar 24 11:15:01 2010 UTC (7 years, 8 months ago) by mmaechler
Original Path: pkg/src
M[ij] indexing now works with non-integer numeric ij and checks better; other changes, see ChangeLog

Revision 2519 - Directory Listing
Modified Fri Feb 5 17:20:14 2010 UTC (7 years, 10 months ago) by mmaechler
Original Path: pkg/src
ore <sparse>[.,.] fixes, using cholmod_submatrix() now

Revision 2516 - Directory Listing
Modified Mon Feb 1 13:27:27 2010 UTC (7 years, 10 months ago) by mmaechler
Original Path: pkg/src
add a PROTECT() [hint from A.Runnalls]

Revision 2510 - Directory Listing
Modified Mon Dec 28 21:09:09 2009 UTC (7 years, 11 months ago) by dmbates
Original Path: pkg/src
Export cholmod_band_inplace

Revision 2509 - Directory Listing
Modified Mon Dec 28 21:07:40 2009 UTC (7 years, 11 months ago) by dmbates
Original Path: pkg/src
allow as_cholmod_sparse to contend with over-allocation

Revision 2508 - Directory Listing
Modified Thu Dec 24 09:47:57 2009 UTC (7 years, 11 months ago) by mmaechler
Original Path: pkg/src
Use Matrix-multiplication for sparse "[" for now

Revision 2507 - Directory Listing
Modified Tue Dec 22 21:11:49 2009 UTC (7 years, 11 months ago) by mmaechler
Original Path: pkg/src
many "abIndex" methods and tests ++ see ChangeLog

Revision 2497 - Directory Listing
Modified Sat Nov 14 21:36:25 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/src
put "abIndex" class in, even if very unfinished;
otherwise, too many changed files get in my way

Revision 2495 - Directory Listing
Modified Wed Nov 11 08:45:21 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/src
add missing PROTECT()

Revision 2494 - Directory Listing
Modified Mon Nov 2 11:55:36 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/src
cosmetic

Revision 2491 - Directory Listing
Modified Sat Oct 24 21:04:46 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/src
still *do* need the explicit diagU2N() workaround

Revision 2490 - Directory Listing
Modified Sat Oct 24 20:40:09 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/src
checkMatrix() does crossprod() now; also see ChangeLog

Revision 2488 - Directory Listing
Modified Sat Oct 24 20:29:18 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/src
dgeMatrix_LU(*, errr_Sing)

Revision 2487 - Directory Listing
Modified Tue Oct 20 13:51:02 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/src
two trivial typos

Revision 2486 - Directory Listing
Modified Tue Oct 6 09:35:15 2009 UTC (8 years, 2 months ago) by mmaechler
Original Path: pkg/src
revert cholmod_common access in *exported* cholmod error handler

Revision 2485 - Directory Listing
Modified Tue Oct 6 09:32:05 2009 UTC (8 years, 2 months ago) by mmaechler
Original Path: pkg/src
better adapt chol2inv definition to newer R`s implicit generic

Revision 2484 - Directory Listing
Modified Fri Oct 2 17:57:48 2009 UTC (8 years, 2 months ago) by dmbates
Original Path: pkg/src
Remove declarations of now-unused identifiers

Revision 2483 - Directory Listing
Modified Thu Oct 1 21:21:20 2009 UTC (8 years, 2 months ago) by dmbates
Original Path: pkg/src
New mechanism for saving and restoring the cholmod_common struct

Revision 2479 - Directory Listing
Modified Sat Sep 26 15:30:25 2009 UTC (8 years, 2 months ago) by dmbates
Original Path: pkg/src
Change CHM_(re)store_common to have the environment passed

Revision 2478 - Directory Listing
Modified Wed Sep 23 22:20:14 2009 UTC (8 years, 2 months ago) by dmbates
Original Path: pkg/src
Add CHM_(re)store_common to save and restore part of the cholmod_common struct.  Not yet working.

Revision 2473 - Directory Listing
Modified Mon Sep 21 08:34:14 2009 UTC (8 years, 2 months ago) by mmaechler
Original Path: pkg/src
some cleanup; notably the exported M_R_cholmod_error()

Revision 2468 - Directory Listing
Modified Wed Sep 16 14:41:39 2009 UTC (8 years, 3 months ago) by dmbates
Original Path: pkg/src
Add chol2inv method

Revision 2460 - Directory Listing
Modified Sat Aug 29 04:08:52 2009 UTC (8 years, 3 months ago) by dmbates
Original Path: pkg/src
Over-allocate memory by 1 double so the pointer is never NULL.  The CHOLMOD code checks for NULL pointers and throws an error, even when the vector has length 0.

Revision 2459 - Directory Listing
Modified Fri Aug 28 22:48:57 2009 UTC (8 years, 3 months ago) by dmbates
Original Path: pkg/src
Changes for memory protection but this version fails R CMD check.

Revision 2457 - Directory Listing
Modified Fri Aug 28 22:18:23 2009 UTC (8 years, 3 months ago) by dmbates
Original Path: pkg/src
Memory leak in xpt

Revision 2456 - Directory Listing
Modified Fri Aug 28 14:52:04 2009 UTC (8 years, 3 months ago) by mmaechler
Original Path: pkg/src
fix PROTECT_WITH_INDEX() use

Revision 2455 - Directory Listing
Modified Fri Aug 28 14:37:39 2009 UTC (8 years, 3 months ago) by mmaechler
Original Path: pkg/src
more PROTECT() {from Andrew Runnalls}; doxy

Revision 2453 - Directory Listing
Modified Fri Aug 28 14:32:25 2009 UTC (8 years, 3 months ago) by mmaechler
Original Path: pkg/src
renaming to an_NA_in_x {Aug.21}

Revision 2449 - Directory Listing
Modified Wed Jul 29 09:17:04 2009 UTC (8 years, 4 months ago) by mmaechler
Original Path: pkg/src
make use of Rf_mkNamed() [as from the very latest R-devel] when in R >= 2.10.0

Revision 2442 - Directory Listing
Modified Mon Jul 20 20:58:57 2009 UTC (8 years, 4 months ago) by mmaechler
Original Path: pkg/src
fix seg.fault after error in Cholesky(*, perm=FALSE)

Revision 2441 - Directory Listing
Modified Mon Jul 20 16:58:27 2009 UTC (8 years, 4 months ago) by mmaechler
Original Path: pkg/src
set CHOLMOD`s own print_function to NULL

Revision 2439 - Directory Listing
Modified Sat Jul 18 16:03:36 2009 UTC (8 years, 4 months ago) by mmaechler
Original Path: pkg/src
Cholesky(*, super = NA): fix "factors" caching

Revision 2418 - Directory Listing
Modified Fri Jul 10 20:26:43 2009 UTC (8 years, 5 months ago) by dmbates
Original Path: pkg/src
Updates to the destructive update of sparse Cholesky

Revision 2409 - Directory Listing
Modified Sat Jun 20 20:55:13 2009 UTC (8 years, 5 months ago) by dmbates
Original Path: pkg/src
chm_factor_update: Ensure an updated LL factor stays LL

Revision 2404 - Directory Listing
Modified Wed Jun 10 18:27:23 2009 UTC (8 years, 6 months ago) by dmbates
Original Path: pkg/src
Change value of set_factor to be the cached factor

Revision 2403 - Directory Listing
Modified Wed Jun 10 18:25:41 2009 UTC (8 years, 6 months ago) by dmbates
Original Path: pkg/src
Comment out unused dgCMatrix_lusol function

Revision 2401 - Directory Listing
Modified Wed Jun 10 17:19:40 2009 UTC (8 years, 6 months ago) by dmbates
Original Path: pkg/src
Re-arrange LU factorization to always use the cached value.

Revision 2399 - Directory Listing
Modified Tue Jun 9 22:57:25 2009 UTC (8 years, 6 months ago) by dmbates
Original Path: pkg/src
PROTECT the result from dgCMatrix_LU in dgCMatrix_matrix_solve

Revision 2392 - Directory Listing
Modified Fri Jun 5 10:34:37 2009 UTC (8 years, 6 months ago) by mmaechler
Original Path: pkg/src
use dngettext only in R 2.10.0; translations have both variants

Revision 2388 - Directory Listing
Modified Wed Jun 3 09:54:41 2009 UTC (8 years, 6 months ago) by mmaechler
Original Path: pkg/src
rm extraneous 's' (from May 28)

Revision 2387 - Directory Listing
Modified Fri May 29 12:50:34 2009 UTC (8 years, 6 months ago) by mmaechler
Original Path: pkg/src
fix up internationalization of (error/warning) messages

Revision 2379 - Directory Listing
Modified Mon May 25 08:38:30 2009 UTC (8 years, 6 months ago) by mmaechler
Original Path: pkg/src
For ease of *development*: comments to ease quick transformation of the file
    in one which saves recompilation in all subdirectories

Revision 2373 - Directory Listing
Modified Sat May 9 19:21:40 2009 UTC (8 years, 7 months ago) by mmaechler
Original Path: pkg/src
Matrix_check_*() slightly more logical  PROTECT() / UNPROTECT() .. 
does not solve the problems (completely).

Revision 2372 - Directory Listing
Modified Fri May 8 14:06:25 2009 UTC (8 years, 7 months ago) by mmaechler
Original Path: pkg/src
PROTECT()  "every SEXP in sight" inside the two  Matrix_check_class*(),
but this is still not quite sufficient

Revision 2371 - Directory Listing
Modified Thu May 7 20:48:03 2009 UTC (8 years, 7 months ago) by dmbates
Original Path: pkg/src
Add const in declaration (-Wall)

Revision 2370 - Directory Listing
Modified Thu May 7 17:15:34 2009 UTC (8 years, 7 months ago) by dmbates
Original Path: pkg/src
Remove unnecessary call to strdup whose result was not being freed

Revision 2364 - Directory Listing
Modified Sat Apr 18 23:32:30 2009 UTC (8 years, 7 months ago) by mmaechler
Original Path: pkg/src
"fix" for the problem that .M.classEnv is not found when Matrix is only loaded but not attached

Revision 2360 - Directory Listing
Modified Tue Apr 7 07:55:03 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/src
lu(*, warnSing)

Revision 2359 - Directory Listing
Modified Mon Apr 6 15:57:50 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/src
rid code of pre-2.9.0 -- part 3

Revision 2354 - Directory Listing
Modified Mon Mar 30 15:31:23 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/src
more robust MatrixClass(); in C, use methods:::classEnv() via wrapper

Revision 2352 - Directory Listing
Modified Wed Mar 25 10:42:22 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/src
use C-level Matrix_check_class_and_super() ... forgot one

Revision 2351 - Directory Listing
Modified Wed Mar 25 10:41:05 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/src
use C-level Matrix_check_class_and_super(); adapt R code (and checks!) that work with class names similarly, using new MatrixClass()

Revision 2348 - Directory Listing
Modified Mon Mar 23 16:50:14 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/src
Matrix_check_class_and_super() [+ 'const' for Matrix_make_named()]

Revision 2346 - Directory Listing
Modified Thu Mar 12 10:40:52 2009 UTC (8 years, 9 months ago) by mmaechler
Original Path: pkg/src
band(x, .,.) fixes, notably for dense x

Revision 2345 - Directory Listing
Modified Wed Mar 11 18:41:28 2009 UTC (8 years, 9 months ago) by mmaechler
Original Path: pkg/src
address remaining warnings in tests/Simple.R, see ChangeLog

Revision 2341 - Directory Listing
Modified Mon Mar 2 17:53:13 2009 UTC (8 years, 9 months ago) by mmaechler
Original Path: pkg/src
misc.cleanup; mostly related to "all NA sparse mat."; see ChangeLog

Revision 2339 - Directory Listing
Modified Mon Mar 2 17:50:23 2009 UTC (8 years, 9 months ago) by mmaechler
Original Path: pkg/src
AIX compilers need BLAS..UNDERSCORE; thanks to Kurt Hornik and Ei-ji Nakama

Revision 2338 - Directory Listing
Modified Fri Feb 13 16:08:32 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/src
add sh-script for dropping SPQR parts

Revision 2337 - Directory Listing
Modified Fri Feb 13 15:10:24 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/src
use  Matrix_with_SPQR

Revision 2336 - Directory Listing
Modified Fri Feb 13 15:07:27 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/src
#define and use  Matrix_with_SPQR

Revision 2327 - Directory Listing
Modified Wed Jan 28 08:46:07 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/src
miscellaneous; some relating to SPQR

Revision 2325 - Directory Listing
Modified Mon Jan 26 22:49:22 2009 UTC (8 years, 10 months ago) by dmbates
Original Path: pkg/src
Forgot a cs_free

Revision 2324 - Directory Listing
Modified Mon Jan 26 21:45:27 2009 UTC (8 years, 10 months ago) by dmbates
Original Path: pkg/src
Force sorted columns after expanding unit diagonal in Matrix_as_cs

Revision 2323 - Directory Listing
Modified Wed Jan 21 20:50:12 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/src
first step at dealing with NA in indices

Revision 2322 - Directory Listing
Modified Wed Jan 21 20:42:42 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/src
2nd steps towards an R - SPQR interface

Revision 2319 - Directory Listing
Modified Sun Jan 18 20:04:54 2009 UTC (8 years, 10 months ago) by dmbates
Original Path: pkg/src
Added an untested create_Csparse function

Revision 2316 - Directory Listing
Modified Fri Jan 16 17:40:10 2009 UTC (8 years, 11 months ago) by mmaechler
Original Path: pkg/src
replace GNU-make by "standard make" Makefile

Revision 2312 - Directory Listing
Modified Sat Jan 10 14:01:26 2009 UTC (8 years, 11 months ago) by mmaechler
Original Path: pkg/src
new sparseMatrix(): construct *sorted* Csparse from un-sorted input, using modify-in-place under the hood

Revision 2304 - Directory Listing
Modified Sun Oct 26 15:27:45 2008 UTC (9 years, 1 month ago) by dmbates
Original Path: pkg/src
Report an error on unsorted columns rather than sorting them

Revision 2299 - Directory Listing
Modified Fri Oct 17 16:07:38 2008 UTC (9 years, 2 months ago) by dmbates
Original Path: pkg/src
Compile only the UF_long version of SparseSuite but setting UF_long to be int

Revision 2298 - Directory Listing
Modified Fri Oct 17 13:45:12 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
AIX also need include <alloca.h>

Revision 2297 - Directory Listing
Modified Fri Oct 17 07:49:06 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
more Makevars & Makefile changes from Brian

Revision 2296 - Directory Listing
Modified Thu Oct 16 17:31:48 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
oops fix

Revision 2294 - Directory Listing
Modified Thu Oct 16 17:19:49 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
Makefile fixup script from Brian

Revision 2293 - Directory Listing
Modified Thu Oct 16 17:18:41 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
move sh- and make- "scripts" to subdirectory scripts/

Revision 2292 - Directory Listing
Modified Thu Oct 16 17:16:33 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
try non-(GNU-make) versions of Makefiles

Revision 2289 - Directory Listing
Modified Wed Oct 15 08:08:57 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
"Makevars instead of Makefile (w/o configure)"

Revision 2288 - Directory Listing
Modified Tue Oct 14 15:15:38 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
Makefile changes for parallel make

Revision 2287 - Directory Listing
Modified Tue Oct 14 15:13:56 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
new 'sublibs' target, and related changes to enable 'parallel make'

Revision 2286 - Directory Listing
Modified Tue Oct 14 15:12:19 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
save the patch file for the subdirectory */Makefile s - in case

Revision 2285 - Directory Listing
Modified Mon Oct 13 17:52:27 2008 UTC (9 years, 2 months ago) by dmbates
Original Path: pkg/src
Include the C string declarations.

Revision 2284 - Directory Listing
Modified Mon Oct 6 22:29:59 2008 UTC (9 years, 2 months ago) by dmbates
Original Path: pkg/src
Modifications for compilation under Windows

Revision 2281 - Directory Listing
Modified Sat Oct 4 03:19:14 2008 UTC (9 years, 2 months ago) by dmbates
Original Path: pkg/src
SparseSuiteQR interface

Revision 2279 - Directory Listing
Modified Fri Oct 3 09:15:54 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
prevent seg.fault from invalid object

Revision 2278 - Directory Listing
Modified Thu Oct 2 13:55:36 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
better Makefile thanks to Simon Urbanek

Revision 2276 - Directory Listing
Modified Thu Oct 2 01:56:28 2008 UTC (9 years, 2 months ago) by dmbates
Original Path: pkg/src
Add dgCMatrix_SPQR and modify other code to allow its compilation and linkage

Revision 2273 - Directory Listing
Modified Wed Oct 1 12:34:32 2008 UTC (9 years, 2 months ago) by dmbates
Original Path: pkg/src
Update SuiteSparse packages, adding SPQR

Revision 2272 - Directory Listing
Modified Wed Sep 24 17:13:45 2008 UTC (9 years, 2 months ago) by dmbates
Original Path: pkg/src
Update to version 2.2.2 of CSparse

Revision 2271 - Directory Listing
Modified Tue Sep 23 16:39:50 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
fix one more (minor) TODO

Revision 2268 - Directory Listing
Modified Mon Sep 22 15:17:12 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/src
less TODOs; notably coercion -> [dln]Matrix; diagonal arithmetic

Revision 2266 - Directory Listing
Modified Wed Sep 17 11:52:59 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/src
cosmetic

Revision 2261 - Directory Listing
Modified Thu Sep 11 08:08:45 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/src
cosmetic

Revision 2260 - Directory Listing
Modified Wed Sep 10 16:31:10 2008 UTC (9 years, 3 months ago) by dmbates
Original Path: pkg/src
Update doxygen comments

Revision 2247 - Directory Listing
Modified Mon Aug 25 16:56:00 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/src
lu(<sparse singular>) gives an error again

Revision 2239 - Directory Listing
Modified Mon Jul 28 19:26:40 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/src
make diagonalMatrix extend sparseM* instead dense*; dgCMatrix_qrsol(.,., order) {in hidden lm.fit.sparse()}

Revision 2238 - Directory Listing
Modified Fri Jul 25 08:04:22 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/src
get rid of superfluous 'return .. /* -Wall */' lines, producing warnings on Sunstudio cc

Revision 2237 - Directory Listing
Modified Fri Jul 25 06:55:42 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/src
two more solve() cases; tweaks related to diagMatrix

Revision 2236 - Directory Listing
Modified Wed Jul 23 16:48:14 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/src
more validObject() checks, and fixes for "over-allocated" i- and x-slots

Revision 2235 - Directory Listing
Modified Wed Jul 23 10:24:17 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/src
re-activate the Csparse_validate(x) feature of sorting x

Revision 2234 - Directory Listing
Modified Wed Jul 23 10:17:46 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/src
fix in Memcpy call :  s/nz/n+1/

Revision 2233 - Directory Listing
Modified Tue Jul 22 17:43:14 2008 UTC (9 years, 4 months ago) by dmbates
Original Path: pkg/src
sort columns more carefully in as_cholmod_sparse

Revision 2231 - Directory Listing
Modified Tue Jul 22 16:00:25 2008 UTC (9 years, 4 months ago) by dmbates
Original Path: pkg/src
check for sorted columns in as_cholmod_sparse instead of assuming it

Revision 2230 - Directory Listing
Modified Tue Jul 22 10:47:40 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/src
Matrix_as_cs( check_U = TRUE):  ans->p needs to be allocated; otherwise the
original R object 'x' is changed !

Revision 2228 - Directory Listing
Modified Mon Jul 21 21:27:38 2008 UTC (9 years, 4 months ago) by dmbates
Original Path: pkg/src
Use R_alloc for semi-permanent storage when expanding diagonal

Revision 2227 - Directory Listing
Modified Mon Jul 21 19:49:33 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/src
first cut of Matrix_as_cs(.,., check_Udiag) - still bugous

Revision 2223 - Directory Listing
Modified Fri Jul 18 23:04:48 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/src
build sparse_diagU2N() into functions underlying AS_CHM_*()

Revision 2220 - Directory Listing
Modified Thu Jul 17 21:37:21 2008 UTC (9 years, 5 months ago) by dmbates
Original Path: pkg/src
Correct number of columns for rhs in dtCMatrix_sparse_solve

Revision 2219 - Directory Listing
Modified Thu Jul 17 21:35:10 2008 UTC (9 years, 5 months ago) by dmbates
Original Path: pkg/src
eye->nz should be -1 for compressed column storage

Revision 2217 - Directory Listing
Modified Thu Jul 17 20:20:26 2008 UTC (9 years, 5 months ago) by dmbates
Original Path: pkg/src
Replace dtCMatrix_solve by more general dtCMatrix_sparse_solve and add new solve method

Revision 2216 - Directory Listing
Modified Thu Jul 17 20:19:29 2008 UTC (9 years, 5 months ago) by dmbates
Original Path: pkg/src
Utility csp_eye in case we want to fold Csparse_diagU2N functionality into Matrix_as_cs

Revision 2210 - Directory Listing
Modified Wed Jul 16 22:20:22 2008 UTC (9 years, 5 months ago) by dmbates
Original Path: pkg/src
Remove vestigial methods based on the parent array; new solve method for signature(a = "dtCMatrix", b = "sparseMatrix")

Revision 2208 - Directory Listing
Modified Sun Jul 13 15:51:45 2008 UTC (9 years, 5 months ago) by dmbates
Original Path: pkg/src
Revise wording in error messages

Revision 2207 - Directory Listing
Modified Mon Jul 7 22:34:52 2008 UTC (9 years, 5 months ago) by mmaechler
Original Path: pkg/src
M[...] <- "sparseVector" etc, see ChangeLog

Revision 2203 - Directory Listing
Modified Sat Jun 14 20:09:17 2008 UTC (9 years, 6 months ago) by mmaechler
Original Path: pkg/src
C based encodeInd() -> faster indexing; any()/all() for nsparse; printSpMatrix2(); show(<diag>)

Revision 2195 - Directory Listing
Modified Fri May 30 15:08:31 2008 UTC (9 years, 6 months ago) by dmbates
Original Path: pkg/src
Use Calloc not Alloca for potentially large allocations in dgeMatrix_exp

Revision 2183 - Directory Listing
Modified Thu Apr 24 10:58:51 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/src
slight change in class-definition of [d]diMatrix; better pos.definite checks for dpo* and dpp*

Revision 2181 - Directory Listing
Modified Thu Apr 24 09:14:58 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/src
fast special case n == 1

Revision 2178 - Directory Listing
Modified Thu Apr 24 06:31:40 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/src
deal with integer 'matrix' in crossprod

Revision 2175 - Directory Listing
Modified Wed Apr 23 11:23:50 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/src
more determinant(); MANY consistency cleanups, found by checkMatrix(); .. (see ChangeLog)

Revision 2166 - Directory Listing
Modified Wed Apr 2 15:06:02 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/src
move declaration such that old gcc does not complain

Revision 2161 - Directory Listing
Modified Sat Mar 29 14:08:25 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/src
make work with 2.7.0 version that do not have rcond

Revision 2157 - Directory Listing
Modified Tue Mar 25 15:00:01 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/src
BunchKaufman(); fix <ddi> o <numeric> bug; Version++

Revision 2156 - Directory Listing
Modified Tue Mar 25 09:26:59 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/src
trivial update of Csparse to version 2.2.1 (Nov.2007)

Revision 2155 - Directory Listing
Modified Sun Mar 23 16:41:02 2008 UTC (9 years, 8 months ago) by bates
Original Path: pkg/src
Correct the call to chm_factor_to_SEXP (wrong kind of free used).

Revision 2153 - Directory Listing
Modified Sat Mar 22 21:22:41 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/src
dsCMatrix_LDL_D() now also uses internal_chm_factor()

Revision 2151 - Directory Listing
Modified Thu Mar 20 23:31:22 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/src
several cosmetics

Revision 2148 - Directory Listing
Modified Thu Mar 20 21:29:57 2008 UTC (9 years, 8 months ago) by bates
Original Path: pkg/src
Cleaned up code in dsCMatrix.c; don't cache factorizations with Imult nonzero

Revision 2147 - Directory Listing
Modified Wed Mar 19 15:34:36 2008 UTC (9 years, 8 months ago) by bates
Original Path: pkg/src
Hidden function ldetL2up to evaluate log-determinant of updated Cholesky factor for a vector of multiples of the identity

Revision 2146 - Directory Listing
Modified Wed Mar 19 14:03:07 2008 UTC (9 years, 8 months ago) by bates
Original Path: pkg/src
Use CHOLMOD to copy factor in CHMfactor_update

Revision 2145 - Directory Listing
Modified Wed Mar 19 14:00:47 2008 UTC (9 years, 8 months ago) by bates
Original Path: pkg/src
Add Imult argument to Cholesky

Revision 2144 - Directory Listing
Modified Tue Mar 18 23:08:12 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
.symDiagonal(), is.na() and more diagonalMatrix "Ops"

Revision 2142 - Directory Listing
Modified Tue Mar 18 15:02:23 2008 UTC (9 years, 9 months ago) by bates
Original Path: pkg/src
update method for CHMfactor; change return type of exported C function chm_factor_update

Revision 2140 - Directory Listing
Modified Tue Mar 18 01:03:48 2008 UTC (9 years, 9 months ago) by bates
Original Path: pkg/src
Added chm_factor_update, documentation and tests

Revision 2138 - Directory Listing
Modified Mon Mar 17 23:23:30 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
update to CHOLMOD version 1.6 (Nov.2007)

Revision 2137 - Directory Listing
Modified Mon Mar 17 22:21:24 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
my fast determinant(<dsC..>) versions

Revision 2134 - Directory Listing
Modified Mon Mar 17 18:53:43 2008 UTC (9 years, 9 months ago) by bates
Original Path: pkg/src
Log-determinant of the parent matrix from a CHMfactor object as chm_factor_ldetL2; documentation and support

Revision 2127 - Directory Listing
Modified Fri Mar 7 14:08:04 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
fix the infamous expm() bug also in "Matrix" (duh!)

Revision 2125 - Directory Listing
Modified Fri Mar 7 07:58:26 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
diagN2U() for preserving (unit-)triangularity in sparse (triang.)matrix multiplication

Revision 2124 - Directory Listing
Modified Thu Mar 6 08:19:40 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
need  La_(norm|rcond)_type  definitions also for R-devel  {for now}

Revision 2121 - Directory Listing
Modified Tue Mar 4 22:01:33 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
+ forgotten Rversion.h

Revision 2120 - Directory Listing
Modified Tue Mar 4 21:44:41 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
use diagU2N in more places; also new Tsparse_diagU2N()

Revision 2119 - Directory Listing
Modified Tue Mar 4 21:44:04 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
use CALLDEF and RREGDEF macros

Revision 2118 - Directory Listing
Modified Tue Mar 4 21:42:55 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
remove unused dtTMatrix_as_dgCMatrix

Revision 2117 - Directory Listing
Modified Mon Mar 3 14:35:25 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
s/norm_type/La_norm_type/ in order to move to R-devel

Revision 2115 - Directory Listing
Modified Sat Feb 23 09:23:17 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
+ forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band allowing simplified methods;  Matrix() and many man/*Rd : replace many as(*, <specific>) by as(*, <virtual superclass>)

Revision 2114 - Directory Listing
Modified Mon Feb 18 17:15:41 2008 UTC (9 years, 9 months ago) by bates
Original Path: pkg/src
-Wall additions

Revision 2113 - Directory Listing
Modified Mon Feb 18 08:27:41 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
miscellaneous cleanup; typically indexing and coercion

Revision 2112 - Directory Listing
Modified Mon Feb 18 08:24:46 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/src
new symmpart(), skewpart()

Revision 2109 - Directory Listing
Modified Sat Jan 26 20:18:03 2008 UTC (9 years, 10 months ago) by maechler
Original Path: pkg/src
new .Call(Tsparse_to_tCsparse,*)

Revision 2106 - Directory Listing
Modified Wed Jan 23 09:36:04 2008 UTC (9 years, 10 months ago) by maechler
Original Path: pkg/src
+ "Schur" class and many more Schur methods

Revision 2104 - Directory Listing
Modified Sat Jan 12 16:09:01 2008 UTC (9 years, 11 months ago) by bates
Original Path: pkg/src
Documentation errors caught by doxygen

Revision 2100 - Directory Listing
Modified Wed Jan 2 17:47:09 2008 UTC (9 years, 11 months ago) by bates
Original Path: pkg/src
Corrected function documentation

Revision 2083 - Directory Listing
Modified Mon Oct 8 13:41:45 2007 UTC (10 years, 2 months ago) by maechler
Original Path: pkg/src
SHLIB_EXT also needed in some Debian circumstances

Revision 2061 - Directory Listing
Modified Sat Sep 1 20:37:11 2007 UTC (10 years, 3 months ago) by maechler
Original Path: pkg/src
make alloca working for Sun

Revision 2049 - Directory Listing
Modified Tue Aug 14 22:22:24 2007 UTC (10 years, 4 months ago) by bates
Original Path: pkg/src
Remove deprecated function writeHB and its methods; switch writeMM to use CHOLMOD code; repair readMM

Revision 2045 - Directory Listing
Modified Tue Aug 14 13:07:10 2007 UTC (10 years, 4 months ago) by bates
Original Path: pkg/src
declare alloca

Revision 2038 - Directory Listing
Modified Mon Aug 6 16:43:03 2007 UTC (10 years, 4 months ago) by bates
Original Path: pkg/src
Duplicate the contents of the RHS before Lapack call

Revision 2036 - Directory Listing
Modified Mon Aug 6 12:03:47 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/src
add more x

Revision 2025 - Directory Listing
Modified Thu Aug 2 08:48:44 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/src
R_cholmod_printf() instead of Rprintf()  just so pointers match

Revision 2019 - Directory Listing
Modified Wed Aug 1 15:44:06 2007 UTC (10 years, 4 months ago) by bates
Original Path: pkg/src
Change API for numeric_as_chm_dense and N_AS_CHM_DN

Revision 2018 - Directory Listing
Modified Wed Aug 1 15:22:05 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/src
fix <dge> %*% <dtr> + misc.cosmetics

Revision 2015 - Directory Listing
Modified Wed Jul 25 14:17:24 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/src
(mostly) patches from Brian re potential changes in R-devel

Revision 2007 - Directory Listing
Modified Thu Jul 19 19:45:48 2007 UTC (10 years, 4 months ago) by bates
Original Path: pkg/src
Export triplet_to_sparse, documentation, use typedefs

Revision 2005 - Directory Listing
Modified Wed Jul 18 14:46:20 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/src
norm() for sparse; systematic checking of norm() and all "Summary" methods

Revision 1986 - Directory Listing
Modified Tue Jul 10 19:30:28 2007 UTC (10 years, 5 months ago) by bates
Original Path: pkg/src
Fix a "thinko" in the new code for dgeMatrix_colsums

Revision 1974 - Directory Listing
Modified Mon Jul 9 20:45:14 2007 UTC (10 years, 5 months ago) by bates
Original Path: pkg/src
Untangle horrible code in dgeMatrix_colsums to fix a subtle bug (Kurt Hornik and Ingo Feinerer)

Revision 1973 - Directory Listing
Modified Mon Jul 9 19:43:42 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/src
"cleaned" dgeMatrix_colsums() - but did not solve the bug

Revision 1968 - Directory Listing
Modified Sat Jul 7 22:49:12 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/src
Rsparse validation methods; finally make use of slot_dup() macro; fix R_to_C (symmetric)

Revision 1965 - Directory Listing
Modified Sat Jul 7 20:06:05 2007 UTC (10 years, 5 months ago) by bates
Original Path: pkg/src
Include cholmod_matrixops.h for declaration of cholmod_symmetry

Revision 1960 - Directory Listing
Modified Fri Jul 6 16:54:43 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/src
merge 'branches/Matrix-APIchange' back into the trunk

Revision 1945 - Directory Listing
Modified Wed Jul 4 18:07:07 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/src
not dropping dimnames (notably of sparse matrices)

Revision 1921 - Directory Listing
Modified Sat Jun 23 18:08:17 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/src
colSums() etc update (fix for lgC*)

Revision 1920 - Directory Listing
Modified Sat Jun 23 09:43:30 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/src
use template instead of huge macro for [diln]gcMatrix_colSums

Revision 1917 - Directory Listing
Modified Thu Jun 21 21:32:39 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/src
update + comment

Revision 1911 - Directory Listing
Modified Tue Jun 19 16:16:58 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/src
colSums, ... rowMeans for all Matrices; notably sparse ones via [diln]gCMatrix_colSums C code

Revision 1908 - Directory Listing
Modified Mon Jun 18 16:14:06 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
Modified dgCMatrix_colSums for sparseVector result

Revision 1907 - Directory Listing
Modified Mon Jun 18 16:12:45 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
Added Matrix_lengthSym

Revision 1906 - Directory Listing
Modified Sat Jun 16 19:26:30 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/src
no longer use backquote (" ` ") in messages

Revision 1901 - Directory Listing
Modified Sat Jun 16 15:52:56 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
added dgCMatrix_colSums for [col,row][Sums,Means]

Revision 1895 - Directory Listing
Modified Fri Jun 15 18:19:23 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
added lm.fit.sparse (unexported), coercion of "factor" to dgCMatrix and dgCMatrix_cholsol

Revision 1893 - Directory Listing
Modified Thu Jun 14 10:46:10 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/src
more strict validity checking for Csparse

Revision 1884 - Directory Listing
Modified Thu Jun 7 08:51:52 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/src
modularize Makefile(.win)  [checked on Uwe`s server]

Revision 1882 - Directory Listing
Modified Wed Jun 6 14:18:12 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/src
a bit more sync between the two Makefiles

Revision 1879 - Directory Listing
Modified Tue Jun 5 17:10:33 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
Remove reference to the no longer available CCOLAMD

Revision 1876 - Directory Listing
Modified Tue Jun 5 16:53:04 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
Update to version 3.0.0 of SuiteSparse

Revision 1875 - Directory Listing
Modified Tue Jun 5 16:50:18 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
update to CSparse version 2.2.0

Revision 1874 - Directory Listing
Modified Tue Jun 5 16:49:30 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
add ./UFconfig to the include path for compilation

Revision 1873 - Directory Listing
Modified Tue Jun 5 16:48:45 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
Update to version 3.0.0 of SuiteSparse

Revision 1869 - Directory Listing
Modified Tue Jun 5 15:03:49 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
Modify for new organization of CSparse package

Revision 1867 - Directory Listing
Modified Mon Jun 4 17:13:02 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
Remove warnings after change to const char* CHAR

Revision 1862 - Directory Listing
Modified Sun Jun 3 14:42:03 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/src
Yet another cholmod export - cholmod_ssmult

Revision 1847 - Directory Listing
Modified Sat May 19 19:23:28 2007 UTC (10 years, 7 months ago) by bates
Original Path: pkg/src
Write 1-based, not 0-based, indices in writeMM

Revision 1844 - Directory Listing
Modified Wed May 16 20:40:34 2007 UTC (10 years, 7 months ago) by bates
Original Path: pkg/src
Added solve methods for CHMfactor class

Revision 1836 - Directory Listing
Modified Mon May 14 13:14:49 2007 UTC (10 years, 7 months ago) by maechler
Original Path: pkg/src
also remove zpotf2.f et al  from Makefile.win

Revision 1828 - Directory Listing
Modified Wed Apr 25 22:23:31 2007 UTC (10 years, 7 months ago) by bates
Original Path: pkg/src
Export another CHOLMOD function

Revision 1827 - Directory Listing
Modified Wed Apr 25 22:22:41 2007 UTC (10 years, 7 months ago) by bates
Original Path: pkg/src
Remove superfluous Lapack files

Revision 1808 - Directory Listing
Modified Thu Mar 29 21:59:20 2007 UTC (10 years, 8 months ago) by bates
Original Path: pkg/src
Consistency of bounds

Revision 1798 - Directory Listing
Modified Sat Mar 24 14:52:47 2007 UTC (10 years, 8 months ago) by maechler
Original Path: pkg/src
better dtC inversion from Kasper K

Revision 1787 - Directory Listing
Modified Fri Feb 16 20:02:19 2007 UTC (10 years, 10 months ago) by bates
Original Path: pkg/src
Prepare for 0.9975-11 release

Revision 1771 - Directory Listing
Modified Tue Feb 6 17:41:42 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/src
forgot free(.) in R_to_C; other cosmetic

Revision 1766 - Directory Listing
Modified Mon Feb 5 16:35:49 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/src
port Doug`s fix to R_to_CMatrix and reactivate .Call()s

Revision 1763 - Directory Listing
Modified Sun Feb 4 21:57:00 2007 UTC (10 years, 10 months ago) by bates
Original Path: pkg/src
Use strdup, not automatic character arrays

Revision 1761 - Directory Listing
Modified Sun Feb 4 19:33:36 2007 UTC (10 years, 10 months ago) by bates
Original Path: pkg/src
Fix a cut-and-paste error

Revision 1760 - Directory Listing
Modified Sat Feb 3 21:13:22 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/src
Rsparse coercions now all via R-level "workaround"; to and from  *virtual* rather than specific classes

Revision 1758 - Directory Listing
Modified Sat Feb 3 16:34:51 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/src
workaround platform-dependent segfault in R_to_CMatrix

Revision 1751 - Directory Listing
Modified Tue Jan 30 17:41:02 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/src
drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R

Revision 1750 - Directory Listing
Modified Mon Jan 29 21:10:53 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/src
more revisiting "FIXME"..

Revision 1747 - Directory Listing
Modified Mon Jan 29 20:17:33 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/src
many more coercions for diag(), "!", etc; see ChangeLog

Revision 1746 - Directory Listing
Modified Mon Jan 29 16:04:38 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/src
new DEPS.mkf + reminder on how to

Revision 1736 - Directory Listing
Modified Tue Jan 23 17:09:41 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/src
+ SET_Dimnames; more dimnames setting and other cosmetic

Revision 1725 - Directory Listing
Modified Wed Jan 17 08:01:10 2007 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/src
accomplished quite a few small FIXMEs; see ChangeLog

Revision 1716 - Directory Listing
Modified Sat Jan 6 02:01:24 2007 UTC (10 years, 11 months ago) by bates
Original Path: pkg/src
export cholmod_scale

Revision 1712 - Directory Listing
Modified Wed Dec 27 21:19:24 2006 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/src
use Lapack 3.1 version for zpot*.f

Revision 1711 - Directory Listing
Modified Wed Dec 27 11:23:41 2006 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/src
+ include

Revision 1710 - Directory Listing
Modified Tue Dec 26 15:57:06 2006 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/src
more "[<-" fixes; validity of triangular sparse

Revision 1708 - Directory Listing
Modified Fri Dec 22 19:53:37 2006 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/src
rbind2() / cbind2() methods fixes + new Auxiliaries

Revision 1703 - Directory Listing
Modified Fri Dec 15 10:16:51 2006 UTC (11 years ago) by bates
Original Path: pkg/src
Export cholmod_change_factor and cholmod_factor_to_sparse

Revision 1691 - Directory Listing
Modified Sun Dec 10 13:54:15 2006 UTC (11 years ago) by bates
Original Path: pkg/src
Convert LDL to LL before conversion to sparseMatrix; clean up docs

Revision 1688 - Directory Listing
Modified Sat Dec 9 00:29:45 2006 UTC (11 years ago) by bates
Original Path: pkg/src
export cholmod_analyze_p; new version

Revision 1686 - Directory Listing
Modified Mon Dec 4 16:20:46 2006 UTC (11 years ago) by bates
Original Path: pkg/src
Check Lapack error code in dgeMatrix_matrix_solve

Revision 1681 - Directory Listing
Modified Wed Nov 29 15:55:03 2006 UTC (11 years ago) by bates
Original Path: pkg/src
Check error code from dgetri in dgeMatrix_solve (Barry Rowlingson)

Revision 1675 - Directory Listing
Modified Tue Nov 7 17:10:51 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/src
better comment

Revision 1673 - Directory Listing
Modified Mon Nov 6 20:54:26 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/src
host of changes; mostly indexing(sub-set & -assign) for symmetric and [ cbind(i,j) ]

Revision 1666 - Directory Listing
Modified Sat Nov 4 17:47:31 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/src
updated to CSparse 2.0.3 (via our CSparse_install.sh)

Revision 1665 - Directory Listing
Modified Fri Nov 3 23:18:07 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/src
fully-sparse solve() for dsC; indexing & comparison fixes

Revision 1664 - Directory Listing
Modified Fri Nov 3 13:38:32 2006 UTC (11 years, 1 month ago) by bates
Original Path: pkg/src
Fixed typo

Revision 1663 - Directory Listing
Modified Thu Nov 2 18:22:11 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/src
oops -- forgot this update in last revision

Revision 1661 - Directory Listing
Modified Thu Nov 2 13:10:50 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/src
2nd round of cleanup for <sparse>_validate()

Revision 1660 - Directory Listing
Modified Thu Nov 2 11:05:35 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/src
tcrossprod(<Csp>, <Csp>); dimnames for [t]crossprod; validity now ensures correct length(Dimnames[[j]])

Revision 1659 - Directory Listing
Modified Wed Nov 1 17:50:15 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/src
extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

Revision 1657 - Directory Listing
Modified Wed Nov 1 16:29:53 2006 UTC (11 years, 1 month ago) by bates
Original Path: pkg/src
crossprod(<CsparseMatrix>,<CsparseMatrix>) added

Revision 1655 - Directory Listing
Modified Mon Oct 30 17:16:27 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/src
another set of fixes/improvements; the last prompted by Harri Kiiveri

Revision 1654 - Directory Listing
Modified Fri Oct 27 16:58:15 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/src
miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

Revision 1646 - Directory Listing
Modified Sun Oct 22 22:42:40 2006 UTC (11 years, 1 month ago) by bates
Original Path: pkg/src
Export yet another cholmod routine

Revision 1641 - Directory Listing
Modified Fri Oct 20 15:04:40 2006 UTC (11 years, 1 month ago) by bates
Original Path: pkg/src
Change cholmod to use Rprintf and R's error handler

Revision 1634 - Directory Listing
Modified Mon Oct 16 13:42:29 2006 UTC (11 years, 2 months ago) by bates
Original Path: pkg/src
Export cholmod_sort

Revision 1629 - Directory Listing
Modified Fri Oct 13 12:51:11 2006 UTC (11 years, 2 months ago) by bates
Original Path: pkg/src
minor corrections

Revision 1624 - Directory Listing
Modified Wed Oct 11 15:00:11 2006 UTC (11 years, 2 months ago) by bates
Original Path: pkg/src
Remove Harwell-Boeing format for writing

Revision 1618 - Directory Listing
Modified Fri Oct 6 15:44:01 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/src
Matrix(0, d,d) should also give sparse (not diagonal); general_to_symmetric; notably for lsC*; more coercions; first cut at Csparse_drop()

Revision 1613 - Directory Listing
Modified Wed Oct 4 22:41:49 2006 UTC (11 years, 2 months ago) by bates
Original Path: pkg/src
New release to export more CCallable functions

Revision 1598 - Directory Listing
Modified Fri Sep 29 09:39:34 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/src
comments & not_yet code

Revision 1595 - Directory Listing
Modified Thu Sep 28 22:32:23 2006 UTC (11 years, 2 months ago) by bates
Original Path: pkg/src
Add missing include file

Revision 1594 - Directory Listing
Modified Thu Sep 28 22:31:21 2006 UTC (11 years, 2 months ago) by bates
Original Path: pkg/src
Export more functions from cholmod for use in Zt_create

Revision 1591 - Directory Listing
Modified Thu Sep 28 15:28:20 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/src
validate tweaks for packed matrices

Revision 1589 - Directory Listing
Modified Wed Sep 27 15:57:12 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/src
*correct* (!) SUBDIRS

Revision 1575 - Directory Listing
Modified Mon Sep 18 14:47:40 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/src
check 'x' slot in l.CMatrix_validate

Revision 1574 - Directory Listing
Modified Mon Sep 18 13:28:50 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/src
comments only

Revision 1570 - Directory Listing
Modified Sat Sep 16 16:23:49 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
rename lcsc_to_matrix to ncsc_* and write new lcsc_*()

Revision 1568 - Directory Listing
Modified Sat Sep 16 15:17:27 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
update for "l"Matrix cholmod-handling

Revision 1564 - Directory Listing
Modified Thu Sep 14 15:52:48 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
fixup SUBDIRS

Revision 1563 - Directory Listing
Modified Thu Sep 14 15:52:32 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
omit 'NULL' SOURCES_BLAS

Revision 1560 - Directory Listing
Modified Thu Sep 14 06:54:18 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
comment more (-Wall)

Revision 1558 - Directory Listing
Modified Wed Sep 13 17:02:50 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Remove redundant validation checks

Revision 1555 - Directory Listing
Modified Wed Sep 13 14:47:28 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Move checks on column sorting of CsparseMatrix objects to Csparse_validate

Revision 1554 - Directory Listing
Modified Tue Sep 12 22:01:24 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Remove lsame.f and zherk.f - now part of R's BLAS

Revision 1553 - Directory Listing
Modified Tue Sep 12 22:00:13 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Conditionalize definition of SIZE_T_MAX to avoid warnings under Mac OS X (Tim will add this to the upstream sources)

Revision 1552 - Directory Listing
Modified Tue Sep 12 21:58:30 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
updates after removal of Metis, CAMD and CCOLAMD

Revision 1551 - Directory Listing
Modified Tue Sep 12 16:39:13 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
1st fix at "Compare"; other small fixes

Revision 1550 - Directory Listing
Modified Tue Sep 12 13:16:30 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
Memcopy: use (int *) in "l" case

Revision 1549 - Directory Listing
Modified Tue Sep 12 13:14:59 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
obvious fix

Revision 1548 - Directory Listing
Modified Mon Sep 11 22:13:07 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
new nMatrix and subclasses; lsparse change to have x slot; many consequences

Revision 1546 - Directory Listing
Modified Mon Sep 11 14:49:05 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Move the alloc_d**Matrix utility functions from the Matrix package to the lme4 package

Revision 1543 - Directory Listing
Modified Sat Sep 9 13:44:15 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
ignoring LDL = FALSE now fixed

Revision 1541 - Directory Listing
Modified Sat Sep 9 12:04:53 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
 fname instead of "fname"

Revision 1537 - Directory Listing
Modified Fri Sep 8 13:16:55 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Remove dependencies on triplet_to_col and its source files

Revision 1534 - Directory Listing
Modified Fri Sep 8 12:21:07 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Remove partitioning algorithms for fill-reducing permutation

Revision 1533 - Directory Listing
Modified Fri Sep 8 12:19:19 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
hide symbols with a pragma (using an __attribute__ may be better)

Revision 1528 - Directory Listing
Modified Thu Sep 7 03:49:23 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Cleanup

Revision 1523 - Directory Listing
Modified Wed Sep 6 22:33:39 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Cleanup

Revision 1517 - Directory Listing
Modified Wed Sep 6 13:34:03 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Cleanup

Revision 1515 - Directory Listing
Modified Tue Sep 5 22:13:15 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Update to version 1.2 of CHOLMOD and latest versions of its dependent packages

Revision 1514 - Directory Listing
Modified Tue Sep 5 20:15:56 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Moved to ../../inst/doc/UFsparse/AMD.txt

Revision 1512 - Directory Listing
Modified Tue Sep 5 10:08:20 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
add FLIBS

Revision 1511 - Directory Listing
Modified Tue Sep 5 09:12:44 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
remove UMFPACK and LDL also from Makefiles

Revision 1510 - Directory Listing
Modified Mon Sep 4 20:34:43 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Turns out that LDL and UMFPACK were not being used

Revision 1507 - Directory Listing
Modified Mon Sep 4 18:41:34 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Merging changes from Matrix-nolmer branch

Revision 1478 - Directory Listing
Modified Fri Sep 1 23:16:49 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
*** empty log message ***

Revision 1470 - Directory Listing
Modified Fri Sep 1 13:30:52 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Remove unused name in ddense_band

Revision 1466 - Directory Listing
Modified Wed Aug 30 03:35:53 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
housekeeping

Revision 1465 - Directory Listing
Modified Wed Aug 30 03:05:59 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
housekeeping

Revision 1464 - Directory Listing
Modified Wed Aug 30 03:05:06 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
housekeeping

Revision 1463 - Directory Listing
Modified Tue Aug 29 22:30:57 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Promotion of %*% and solve to RHS of ddenseMatrix

Revision 1461 - Directory Listing
Modified Tue Aug 29 16:17:27 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Define and use class_P and mMatrix_as_dgeMatrix

Revision 1458 - Directory Listing
Modified Tue Aug 29 00:04:48 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Remove vestigial classed argument for dsCMatrix_matrix_solve

Revision 1453 - Directory Listing
Modified Sun Aug 27 16:16:35 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Added triu, tril and band for ddenseMatrix objects.

Revision 1451 - Directory Listing
Modified Sat Aug 26 17:25:57 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Added initial version of dgeMatrix_band but may change design

Revision 1449 - Directory Listing
Modified Sat Aug 26 13:00:36 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Remove sections of code that are no longer used

Revision 1448 - Directory Listing
Modified Sat Aug 26 03:29:36 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Move methods to the CsparseMatrix class

Revision 1447 - Directory Listing
Modified Fri Aug 25 20:38:36 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

Revision 1441 - Directory Listing
Modified Thu Aug 24 21:59:49 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.

Revision 1440 - Directory Listing
Modified Thu Aug 24 18:34:18 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Use dup_mMatrix_as_dgeMatrix

Revision 1438 - Directory Listing
Modified Thu Aug 24 18:23:36 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Replaced R_ldl etc. by CHOLMOD functions

Revision 1437 - Directory Listing
Modified Thu Aug 24 18:23:11 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Replaced R_ldl etc. by CHOLMOD functions

Revision 1436 - Directory Listing
Modified Thu Aug 24 18:22:39 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Use dup_mMatrix_as_dgeMatrix

Revision 1433 - Directory Listing
Modified Thu Aug 24 18:19:36 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Replaced by CHOLMOD functions

Revision 1432 - Directory Listing
Modified Thu Aug 24 16:21:18 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
eliminate classed argument from dup_mM*() and dependencies

Revision 1430 - Directory Listing
Modified Wed Aug 23 22:13:34 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Paring down dependencies

Revision 1428 - Directory Listing
Modified Wed Aug 23 21:32:30 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Disable chol methods for lsCMatrix class temporarily; Comment out old code in src/lsCMatrix.[ch]

Revision 1427 - Directory Listing
Modified Wed Aug 23 21:29:22 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Add Cholesky generic and method for dsCMatrix.  Use CHOLMOD for chol().

Revision 1426 - Directory Listing
Modified Wed Aug 23 21:27:04 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Ensure 'factors' slot exists in result of dgeMatrix_crossprod (may need to do this in other places).

Revision 1425 - Directory Listing
Modified Wed Aug 23 21:25:32 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

Revision 1424 - Directory Listing
Modified Wed Aug 23 14:26:19 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
comments; cosmetic

Revision 1421 - Directory Listing
Modified Tue Aug 22 22:50:38 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Comment out vestigial functions

Revision 1419 - Directory Listing
Modified Tue Aug 22 22:49:17 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
use diag_P and uplo_P macros

Revision 1418 - Directory Listing
Modified Tue Aug 22 22:47:37 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Comment out vestigial functions

Revision 1417 - Directory Listing
Modified Tue Aug 22 22:46:07 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Use CHOLMOD for dsCMatrix_chol and dsCMatrix_matrix_solve.

Revision 1416 - Directory Listing
Modified Tue Aug 22 22:44:14 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Move check_class to Mutils.h and some bug fixes

Revision 1415 - Directory Listing
Modified Tue Aug 22 18:06:54 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Misunderstood effect of make_d_matrix_triangular and make_d_matrix_symmetric.  Now fixed.  Use _NOT_A_CLASS_ instead of dmatrix for the name of the class that should not occur.

Revision 1413 - Directory Listing
Modified Tue Aug 22 17:25:24 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
register dup_mMatrix_as_dgeMatrix for coercions.

Revision 1412 - Directory Listing
Modified Tue Aug 22 17:23:39 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
updated for general types of classed Matrices, matrices or numeric or logical vectors.

Revision 1410 - Directory Listing
Modified Tue Aug 22 01:00:03 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Use dup_mMatrix_as_dgeMatrix

Revision 1409 - Directory Listing
Modified Tue Aug 22 00:57:22 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
update validation tests, fix -Wall warnings

Revision 1407 - Directory Listing
Modified Mon Aug 21 15:24:47 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
rename class "LU" to "denseLU" and make "LU" virtual

Revision 1404 - Directory Listing
Modified Mon Aug 21 14:38:50 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Fix memory leak caught by valgrind.

Revision 1399 - Directory Listing
Modified Sun Aug 20 16:14:07 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Fix thinko in sparseQR_resid_fitted

Revision 1397 - Directory Listing
Modified Sun Aug 20 03:24:10 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Check length of q before trying to store it

Revision 1396 - Directory Listing
Modified Sun Aug 20 03:17:19 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted

Revision 1395 - Directory Listing
Modified Sun Aug 20 03:15:25 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/src
Added dup_mMatrix_as_dgeMatrix utility

Revision 1394 - Directory Listing
Modified Sat Aug 19 12:16:16 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/src
add comment on why Rdefines.h

Revision 1393 - Directory Listing
Modified Fri Aug 18 17:00:10 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/src
using R_VERSION (useful more generally) - does not help

Revision 1386 - Directory Listing
Modified Thu Aug 17 22:30:40 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Remove code that is no longer used

Revision 1385 - Directory Listing
Modified Thu Aug 17 22:30:01 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Added solve methods for dgCMatrix and documentation

Revision 1384 - Directory Listing
Modified Thu Aug 17 13:59:21 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Update to version 2.0.1 of Tim Davis's CSparse library

Revision 1383 - Directory Listing
Modified Thu Aug 17 13:57:53 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
add sparse LU and QR decompositions

Revision 1382 - Directory Listing
Modified Wed Aug 16 16:34:27 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/src
new script for CSparse updating

Revision 1381 - Directory Listing
Modified Wed Aug 16 03:17:34 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Repaired Matrix_cs_as_SEXP, cosmetic changes in dgCMatrix_QR

Revision 1380 - Directory Listing
Modified Tue Aug 15 22:31:30 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

Revision 1375 - Directory Listing
Modified Tue Aug 15 18:21:49 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/src
eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general

Revision 1371 - Directory Listing
Modified Mon Aug 14 21:08:58 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Utilities Csparse_to_logical and Csparse_symmetric_to_general

Revision 1369 - Directory Listing
Modified Mon Aug 14 18:54:04 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

Revision 1367 - Directory Listing
Modified Sat Aug 12 17:33:07 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Generalize conversions

Revision 1366 - Directory Listing
Modified Sat Aug 12 17:31:39 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Generalize conversions

Revision 1363 - Directory Listing
Modified Thu Aug 10 18:49:06 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Adjust glmer_init for S4SXP

Revision 1360 - Directory Listing
Modified Tue Aug 8 17:29:03 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
crossprod and tcrossprod for TsparseMatrix

Revision 1353 - Directory Listing
Modified Tue Aug 8 14:54:12 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
tcrossprod result has stype = -1 (perhaps this should change).

Revision 1352 - Directory Listing
Modified Mon Aug 7 18:31:12 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Set stype in C function Csparse_crossprod and avoid R-level conversions

Revision 1342 - Directory Listing
Modified Tue Aug 1 20:26:45 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
hatTrace and warnings about boundary convergence

Revision 1336 - Directory Listing
Modified Mon Jul 31 23:05:04 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/src
Add hatTrace function

Revision 1331 - Directory Listing
Modified Sat Jul 22 17:59:53 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/src
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

Revision 1330 - Directory Listing
Modified Fri Jul 21 08:28:18 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/src
pass verbose argument to (gl)mer_MCMCsamp() and use it in C code

Revision 1323 - Directory Listing
Modified Mon Jul 17 18:34:45 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/src
Add coersion from CHMfactor to sparseMatrix

Revision 1318 - Directory Listing
Modified Mon Jul 17 13:06:55 2006 UTC (11 years, 5 months ago) by maechler
Original Path: pkg/src
dsTMatrix_as_dgTMatrix(): do not copy the diag TWICE

Revision 1317 - Directory Listing
Modified Tue Jul 11 22:02:10 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/src
Fix the problem of applying INTEGER to the x slot of the value.

Revision 1315 - Directory Listing
Modified Mon Jul 10 16:08:05 2006 UTC (11 years, 5 months ago) by maechler
Original Path: pkg/src
miscellaneous small things, including extended tests; see also ChangeLog

Revision 1314 - Directory Listing
Modified Mon Jul 10 15:23:48 2006 UTC (11 years, 5 months ago) by maechler
Original Path: pkg/src
add lgCMatrix_diag()

Revision 1310 - Directory Listing
Modified Thu Jul 6 15:27:14 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/src
Remove definitions of unused identifiers

Revision 1309 - Directory Listing
Modified Thu Jul 6 15:25:55 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/src
mcmcsamp for glmer objects

Revision 1308 - Directory Listing
Modified Thu Jul 6 15:25:21 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/src
mcmcsamp for glmer objects

Revision 1307 - Directory Listing
Modified Thu Jul 6 15:16:45 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/src
Correction in pedigree_inbreeding (which is not currently being used or fully tested)

Revision 1296 - Directory Listing
Modified Sat Jun 10 18:06:33 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/src
Re-aligned deviance column in mcmcsamp output (and no longer use index of -1); added calculations of mer_hat_trace

Revision 1294 - Directory Listing
Modified Thu Jun 8 16:06:02 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/src
Many changes in mcmcsample and other places

Revision 1284 - Directory Listing
Modified Sat May 27 20:01:11 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/src
More careful checks in subbars and friends, code for calculating inbreeding coefficients directly from the pedigree

Revision 1283 - Directory Listing
Modified Sat May 27 19:51:01 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/src
Add isNested and for an identity permutation for nested grouping factors

Revision 1282 - Directory Listing
Modified Wed May 24 17:00:12 2006 UTC (11 years, 6 months ago) by maechler
Original Path: pkg/src
eliminate a few old "FIXME"s (and add a new one :-)

Revision 1279 - Directory Listing
Modified Tue May 23 08:01:11 2006 UTC (11 years, 6 months ago) by maechler
Original Path: pkg/src
make compilable

Revision 1278 - Directory Listing
Modified Mon May 22 22:30:11 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/src
Begin isNested

Revision 1277 - Directory Listing
Modified Mon May 22 19:16:12 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/src
Add an implementation of mer_denom_df

Revision 1275 - Directory Listing
Modified Mon May 22 18:58:08 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/src
Compile the check module for CHOLMOD

Revision 1273 - Directory Listing
Modified Mon May 22 18:56:23 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/src
Copy colcount in CHOLMOD supernodal factorization

Revision 1272 - Directory Listing
Modified Sat May 20 11:34:18 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/src
Initial denom_df attempt

Revision 1271 - Directory Listing
Modified Thu May 18 06:47:09 2006 UTC (11 years, 7 months ago) by maechler
Original Path: pkg/src
some  "sparse <-> graph"  updates

Revision 1267 - Directory Listing
Modified Tue May 16 19:12:13 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/src
single argument [t]crossprod now returns a symmetric matrix

Revision 1265 - Directory Listing
Modified Mon May 15 22:36:59 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/src
Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

Revision 1262 - Directory Listing
Modified Sun Apr 30 15:40:39 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/src
Add special solve method for unit upper triangular matrices

Revision 1261 - Directory Listing
Modified Sun Apr 30 15:39:44 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/src
Add chol method for pedigree objects

Revision 1256 - Directory Listing
Modified Wed Apr 19 14:19:29 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/src
nz component of cs structure should be -1 for a compressed column-oriented matrix

Revision 1252 - Directory Listing
Modified Sat Apr 15 13:47:09 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/src
Remove redundant #include "cs.h" directives.

Revision 1251 - Directory Listing
Modified Sat Apr 15 13:08:26 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/src
Add CSparse-based solve methods for dtCMatrix class

Revision 1250 - Directory Listing
Modified Sat Apr 15 13:01:24 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/src
Add CSparse library and utilities

Revision 1248 - Directory Listing
Modified Thu Apr 13 22:05:22 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/src
C code for inverse of sparse, unit, lower triangular matrices (pattern only at present)

Revision 1243 - Directory Listing
Modified Sun Apr 9 00:02:26 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/src
Added qqmath method for ranef.lmer and postVar for ranef methods

Revision 1236 - Directory Listing
Modified Thu Mar 23 15:16:17 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/src
Propagate DimNames in dsyMatrix_as_dspMatrix

Revision 1231 - Directory Listing
Modified Sat Mar 18 17:41:34 2006 UTC (11 years, 9 months ago) by bates
Original Path: pkg/src
Trivial change in documentation of a function

Revision 1230 - Directory Listing
Modified Thu Mar 16 20:03:41 2006 UTC (11 years, 9 months ago) by bates
Original Path: pkg/src
Fix dpotrf call for BLAS under Mac OS X

Revision 1223 - Directory Listing
Modified Tue Mar 7 11:06:46 2006 UTC (11 years, 9 months ago) by maechler
Original Path: pkg/src
lmer(): dropped non-sensical 'x' and 'y' arguments

Revision 1219 - Directory Listing
Modified Wed Feb 22 08:21:09 2006 UTC (11 years, 9 months ago) by maechler
Original Path: pkg/src
use R_ARCH for R-devel

Revision 1218 - Directory Listing
Modified Mon Feb 20 22:47:20 2006 UTC (11 years, 9 months ago) by bates
Original Path: pkg/src
Used cholmod_vertcat and cholmod_horzcat for cbind2 and rbind2 in the dsparseMatrix virtual class

Revision 1213 - Directory Listing
Modified Tue Feb 7 23:44:07 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Fix case of cbind(successes, failures) for lmer fitting a GLMM (see Changelog)

Revision 1209 - Directory Listing
Modified Wed Jan 25 23:42:57 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Use coersion for transpose of dtCMatrix class

Revision 1208 - Directory Listing
Modified Wed Jan 25 15:19:29 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Move dtTMatrix_to_dtCMatrix to CHOLMOD code

Revision 1206 - Directory Listing
Modified Tue Jan 24 23:02:36 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Initialize result of dgeMatrix_crossprod

Revision 1205 - Directory Listing
Modified Tue Jan 24 21:03:04 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Fix trivial memory leaks

Revision 1204 - Directory Listing
Modified Tue Jan 24 17:48:18 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Fix trivial memory leak

Revision 1200 - Directory Listing
Modified Mon Jan 23 16:01:20 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/src
make*_(triangular|symmetric) : now for ldense* as well

Revision 1196 - Directory Listing
Modified Sun Jan 22 14:52:05 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
fix valgrind-detected memory leak

Revision 1195 - Directory Listing
Modified Sun Jan 22 14:16:38 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Be more conservative by running cholmod_sort before cholmod_nnz

Revision 1194 - Directory Listing
Modified Sun Jan 22 14:16:04 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Fixing memory leaks

Revision 1193 - Directory Listing
Modified Sat Jan 21 21:43:13 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Free memory allocated in csc_tcrossprod

Revision 1191 - Directory Listing
Modified Fri Jan 20 19:47:10 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Use cholmod_copy in csc_tcrossprod

Revision 1190 - Directory Listing
Modified Fri Jan 20 19:46:38 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Clean up documentation

Revision 1187 - Directory Listing
Modified Thu Jan 19 22:10:55 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/src
fix that other old bug that crept into 2nd last fix

Revision 1186 - Directory Listing
Modified Thu Jan 19 22:06:38 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/src
+ "{"

Revision 1185 - Directory Listing
Modified Thu Jan 19 22:02:53 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/src
restitute cholmod_common declaration to setting 0.99-6

Revision 1180 - Directory Listing
Modified Thu Jan 19 00:43:37 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/src
Over to Martin for release 0.995-2

Revision 1177 - Directory Listing
Modified Wed Jan 18 07:35:10 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/src
ALL_CFLAGS += -O2

Revision 1176 - Directory Listing
Modified Wed Jan 18 07:31:41 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/src
correct LAPACK_LIBS (didn't change all in r2189)

Revision 1175 - Directory Listing
Modified Tue Jan 17 23:41:36 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/src
Munging the data frame

Revision 1174 - Directory Listing
Modified Mon Jan 16 20:03:48 2006 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/src
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings

Revision 1167 - Directory Listing
Modified Sun Jan 15 21:13:54 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/src
Removing rcond slot from Matrix objects

Revision 1164 - Directory Listing
Modified Sat Jan 14 23:40:42 2006 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/src
new dMatrix_validate and dense_nonpacked_validate

Revision 1162 - Directory Listing
Modified Fri Jan 13 23:47:38 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/src
Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

Revision 1158 - Directory Listing
Modified Fri Jan 13 13:13:09 2006 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/src
Linking change for R-devel (windows), thanks to BDR

Revision 1156 - Directory Listing
Modified Thu Jan 12 23:39:56 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/src
Remove redundant registration of dspMatrix_trf; incorporate wts and wrkres slots in mer class

Revision 1151 - Directory Listing
Modified Thu Jan 12 07:31:55 2006 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/src
use "$(MAKE)", not "make" in Makefiles; needed eg on *BSD for "gmake"

Revision 1143 - Directory Listing
Modified Thu Jan 12 03:17:24 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/src
Switch to supernodal Cholesky representation of mer objects

Revision 1142 - Directory Listing
Modified Thu Jan 12 03:10:29 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/src
Remove dgBCMatrix.[ch] and dependencies

Revision 1141 - Directory Listing
Modified Thu Jan 12 03:02:46 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/src
Change malloc to Calloc in chm_common.c and correspondingly free to Free there and elsewhere

Revision 1119 - Directory Listing
Modified Sat Jan 7 19:52:37 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/src
Fix due to Peter Dalgaard for segfault with multiple non-nested grouping factors; Version 0.99-5

Revision 1101 - Directory Listing
Modified Thu Dec 29 20:05:37 2005 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/src
dgeMatrix_matrix_crossprod(*, trans)

Revision 1098 - Directory Listing
Modified Thu Dec 29 11:38:59 2005 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/src
some 2-argument-tcrossprod methods (and test svn)

Revision 1067 - Directory Listing
Modified Mon Nov 28 16:27:29 2005 UTC (12 years ago) by bates
Original Path: pkg/src
Added crossprod method for Csparse and dense

Revision 1059 - Directory Listing
Modified Wed Nov 23 22:20:13 2005 UTC (12 years ago) by bates
Original Path: pkg/src
Matrix multiplication and coersion at higher level

Revision 1053 - Directory Listing
Modified Mon Nov 14 22:21:04 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Release 0.99-2

Revision 1048 - Directory Listing
Modified Sat Nov 12 16:44:04 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Test for both BLAS_LIBS and LAPACK_LIBS

Revision 1047 - Directory Listing
Modified Sat Nov 12 12:35:55 2005 UTC (12 years, 1 month ago) by maechler
Original Path: pkg/src
revert to original (-r1820)

Revision 1046 - Directory Listing
Modified Sat Nov 12 12:07:53 2005 UTC (12 years, 1 month ago) by maechler
Original Path: pkg/src
lsame.f needed for z*.f - only if not BLAS_LIBS

Revision 1041 - Directory Listing
Modified Fri Nov 11 21:45:50 2005 UTC (12 years, 1 month ago) by maechler
Original Path: pkg/src
use $(.)

Revision 1033 - Directory Listing
Modified Wed Nov 9 22:39:33 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
typo

Revision 1032 - Directory Listing
Modified Wed Nov 9 17:55:53 2005 UTC (12 years, 1 month ago) by maechler
Original Path: pkg/src
need for "extern" (by Brian)

Revision 1031 - Directory Listing
Modified Wed Nov 9 17:50:06 2005 UTC (12 years, 1 month ago) by maechler
Original Path: pkg/src
using malloc & free & variable "dofree"

Revision 1030 - Directory Listing
Modified Wed Nov 9 17:48:24 2005 UTC (12 years, 1 month ago) by maechler
Original Path: pkg/src
Windows "make" extensions (based on Brian`s)

Revision 1029 - Directory Listing
Modified Wed Nov 9 15:26:22 2005 UTC (12 years, 1 month ago) by maechler
Original Path: pkg/src
use free() to clean up after  as_cholmod_*() since these use malloc() - as in Brian`s patch

Revision 1026 - Directory Listing
Modified Tue Nov 8 23:12:38 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Moving CHOLMOD User Guide

Revision 1025 - Directory Listing
Modified Tue Nov 8 23:11:59 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Moving CHOLMOD User Guide

Revision 1024 - Directory Listing
Modified Tue Nov 8 23:09:13 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
New version of Makefile.win

Revision 1023 - Directory Listing
Modified Tue Nov 8 23:07:36 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Remove entire UFconfig directory

Revision 1022 - Directory Listing
Modified Tue Nov 8 20:49:59 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Modifying CHOLMOD Makefiles and directories

Revision 1021 - Directory Listing
Modified Tue Nov 8 19:40:59 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Removing unused directory

Revision 1020 - Directory Listing
Modified Tue Nov 8 19:40:36 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Removing unused directory

Revision 1019 - Directory Listing
Modified Tue Nov 8 19:28:07 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src


Revision 1018 - Directory Listing
Modified Tue Nov 8 19:27:47 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src


Revision 1017 - Directory Listing
Modified Tue Nov 8 19:17:19 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src


Revision 1016 - Directory Listing
Modified Tue Nov 8 19:13:56 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Removing the test matrix directory

Revision 1014 - Directory Listing
Modified Tue Nov 8 18:21:28 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Moving AMD docs to inst/doc

Revision 1013 - Directory Listing
Modified Tue Nov 8 13:33:44 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
Use Calloc/Free, not malloc/Free

Revision 989 - Directory Listing
Modified Tue Oct 25 17:39:26 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/src
munging the Makefiles

Revision 984 - Directory Listing
Modified Tue Oct 11 18:08:46 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Tidying up

Revision 983 - Directory Listing
Modified Tue Oct 11 15:19:20 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Remove references to Pattern.[ch]

Revision 982 - Directory Listing
Modified Tue Oct 11 15:18:23 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Remove references to Pattern.[ch]

Revision 980 - Directory Listing
Modified Tue Oct 11 14:11:44 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Remove Pattern sources that are no longer needed

Revision 979 - Directory Listing
Modified Tue Oct 11 00:02:45 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Added a FIXME - will fix later

Revision 978 - Directory Listing
Modified Mon Oct 10 13:54:09 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
More mer2 modifications

Revision 977 - Directory Listing
Modified Fri Oct 7 22:14:47 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
mer2_initial

Revision 975 - Directory Listing
Modified Fri Oct 7 20:18:14 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
comment

Revision 971 - Directory Listing
Modified Fri Oct 7 15:40:21 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
add BLAS zherk.f because it's not (yet) in R

Revision 970 - Directory Listing
Modified Fri Oct 7 14:20:23 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Added a factorization in mer2_create so the permutation could be applied to Z'X and Z'y

Revision 969 - Directory Listing
Modified Thu Oct 6 23:34:20 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Permutation of Z'X and Z'y in mer2_factor

Revision 968 - Directory Listing
Modified Thu Oct 6 23:33:25 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
nrow, not ncol

Revision 967 - Directory Listing
Modified Thu Oct 6 03:07:23 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
More updates on lmer - still not quite correct

Revision 966 - Directory Listing
Modified Thu Oct 6 03:06:40 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Routines missing from the lapack module sources

Revision 964 - Directory Listing
Modified Mon Oct 3 20:35:52 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
new and better error mesage when info

Revision 963 - Directory Listing
Modified Mon Oct 3 01:44:56 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Modifications to mer2

Revision 960 - Directory Listing
Modified Sat Oct 1 20:10:45 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
cosmetic

Revision 957 - Directory Listing
Modified Sat Oct 1 20:08:04 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
check return value from cholmod_aat()   {fix seg.fault}

Revision 956 - Directory Listing
Modified Fri Sep 30 17:28:00 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...

Revision 955 - Directory Listing
Modified Thu Sep 29 19:32:14 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
duh: LIB was not a name

Revision 952 - Directory Listing
Modified Wed Sep 28 19:19:19 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
packed_to_full_(double|int) and full_to_packed_*

Revision 951 - Directory Listing
Modified Wed Sep 28 12:42:51 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
use uplo_P() and diag_P() macros instead of *_value() functions

Revision 950 - Directory Listing
Modified Wed Sep 28 12:42:11 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
+ include

Revision 945 - Directory Listing
Modified Wed Sep 28 08:54:28 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
+ logical dense matrices; more coercions

Revision 944 - Directory Listing
Modified Wed Sep 28 08:54:00 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
fix longstanding typo; new dsT*_as_dgT*

Revision 943 - Directory Listing
Modified Wed Sep 28 08:52:22 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
+ uplo_value(), diag_value()

Revision 940 - Directory Listing
Modified Tue Sep 27 00:50:35 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

Revision 932 - Directory Listing
Modified Mon Sep 19 23:04:52 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Updated DEPS.mkf and some include files

Revision 930 - Directory Listing
Modified Mon Sep 19 21:29:37 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
corrected error message

Revision 928 - Directory Listing
Modified Mon Sep 19 21:10:59 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
crossprod and tcrossprod for Tsparse

Revision 927 - Directory Listing
Modified Mon Sep 19 21:09:49 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Fixed a thinko picked up by the compiler

Revision 926 - Directory Listing
Modified Mon Sep 19 21:08:53 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Keep -Wall quiet

Revision 925 - Directory Listing
Modified Mon Sep 19 19:01:31 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/src
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more  "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

Revision 923 - Directory Listing
Modified Sun Sep 18 23:41:45 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
More progress on incorporating CHOLMOD - still not passing CMD check

Revision 922 - Directory Listing
Modified Sun Sep 18 16:33:54 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/src
Added CHOLMOD-based C functions.  Still need methods defined in R and some error checking

Revision 921 - Directory Listing
Modified Sat Sep 17 14:27:41 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Sparse Matrix methods using CHOLMOD inside ifdef blocks

Revision 920 - Directory Listing
Modified Fri Sep 16 19:36:51 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Some CHOLMOD utilities

Revision 919 - Directory Listing
Modified Fri Sep 16 17:27:06 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/src
new compressed_non_0_ij()

Revision 917 - Directory Listing
Modified Thu Sep 15 18:03:55 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Document changes

Revision 916 - Directory Listing
Modified Thu Sep 15 17:52:59 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Actually needed the Check module

Revision 915 - Directory Listing
Modified Thu Sep 15 17:45:23 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Removing unneeded directories

Revision 914 - Directory Listing
Modified Thu Sep 15 17:41:38 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Removing unneeded directories

Revision 913 - Directory Listing
Modified Thu Sep 15 17:38:18 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
No need for xerbla in R package

Revision 912 - Directory Listing
Modified Thu Sep 15 14:53:55 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Adding CHOLMOD and related source packages

Revision 903 - Directory Listing
Modified Wed Sep 7 20:43:18 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Remove unnecessary declaration

Revision 901 - Directory Listing
Modified Tue Sep 6 01:26:11 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Add "start" argument to lmer

Revision 896 - Directory Listing
Modified Sat Sep 3 21:57:18 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/src
more consistency in validation checks

Revision 895 - Directory Listing
Modified Sat Sep 3 21:56:35 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/src
cosmetic, comment

Revision 894 - Directory Listing
Modified Sat Sep 3 21:55:38 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/src
comments

Revision 890 - Directory Listing
Modified Thu Sep 1 17:18:08 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/src
add triangularMatrix_validate and symmetric* to C code and make (re!)use of it - not quite everywhere?

Revision 888 - Directory Listing
Modified Thu Sep 1 13:46:21 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
New simulate method for lmer objects

Revision 885 - Directory Listing
Modified Tue Aug 30 20:54:55 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/src
fix typo in non-validity text

Revision 883 - Directory Listing
Modified Tue Aug 30 14:38:04 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Doxygen documentation for C function

Revision 879 - Directory Listing
Modified Tue Aug 30 14:35:05 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Added simulate generic and method

Revision 878 - Directory Listing
Modified Sun Aug 28 13:57:39 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
Add simulate method for lmer

Revision 876 - Directory Listing
Modified Sat Aug 27 22:50:57 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/src
clean up conversion of graphNEL to sparseMatrix

Revision 874 - Directory Listing
Modified Sat Aug 27 21:27:51 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/src
prepare graphNEL coercion both for directed and undir.

Revision 866 - Directory Listing
Modified Fri Aug 19 16:58:26 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/src
new lcrc_to_matrix code

Revision 862 - Directory Listing
Modified Thu Aug 18 21:31:07 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Coercion method for graphNEL to sparseMatrix class

Revision 852 - Directory Listing
Modified Tue Aug 16 17:52:16 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Move readHB and readMM to R code and allow the use of connections

Revision 846 - Directory Listing
Modified Wed Aug 10 22:08:35 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Release 0.98-3

Revision 841 - Directory Listing
Modified Tue Aug 9 14:21:32 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Remove second declaration of IOHBterminate

Revision 840 - Directory Listing
Modified Mon Aug 8 16:16:17 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Avoid problems with trying to write to string constants.

Revision 838 - Directory Listing
Modified Mon Aug 8 14:59:38 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
writeHarwellBoeing and writeMatrixMarket routines

Revision 835 - Directory Listing
Modified Mon Aug 8 13:33:18 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Add writeHB and writeMM methods and generic

Revision 825 - Directory Listing
Modified Sun Aug 7 15:22:33 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Harwell-Boeing and MatrixMarket formats

Revision 824 - Directory Listing
Modified Sat Aug 6 20:01:51 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Allow mcmcsamp on transformed parameters

Revision 820 - Directory Listing
Modified Wed Jul 27 23:07:04 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Version 0.98-1

Revision 818 - Directory Listing
Modified Tue Jul 26 22:46:14 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
updates on lmer_MCMCsamp

Revision 816 - Directory Listing
Modified Tue Jul 26 12:36:10 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Working version of lmer_MCMCsamp - may have chisq in wrong place when sampling sigmasqr

Revision 815 - Directory Listing
Modified Sun Jul 24 23:53:40 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Added lmer_MCMCsamp to the C sources

Revision 814 - Directory Listing
Modified Thu Jul 21 23:05:52 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Working version of the glmmMCMC producing an mcmc object

Revision 813 - Directory Listing
Modified Thu Jul 21 16:41:42 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
New sampling for glmerMCMC but intermediates are not appropriately PROTECTed

Revision 812 - Directory Listing
Modified Thu Jul 21 14:59:04 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/src
Added an rWishart function, which should later be moved to the stats package

Revision 808 - Directory Listing
Modified Mon Jul 11 15:05:40 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Release 0.97-3

Revision 806 - Directory Listing
Modified Fri Jul 8 15:38:43 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Preliminary version of glmmMCMC

Revision 805 - Directory Listing
Modified Fri Jul 8 03:47:35 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
More work on glmer_ranef_update - still not complete

Revision 804 - Directory Listing
Modified Thu Jul 7 20:05:47 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Preparing for glmmMCMC

Revision 803 - Directory Listing
Modified Thu Jul 7 19:09:49 2005 UTC (12 years, 5 months ago) by murdoch
Original Path: pkg/src
Get include files from R_HOME/include in Windows

Revision 802 - Directory Listing
Modified Wed Jul 6 23:55:39 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
got glmer_fixed_update working

Revision 801 - Directory Listing
Modified Wed Jul 6 16:24:33 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Updates for release 0.97-2

Revision 800 - Directory Listing
Modified Tue Jul 5 00:38:09 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Clean up

Revision 796 - Directory Listing
Modified Mon Jul 4 14:57:28 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Added utilities vecSum and vecIncrement

Revision 795 - Directory Listing
Modified Mon Jul 4 14:56:57 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Added AGQ for glmer class

Revision 790 - Directory Listing
Modified Sat Jul 2 20:57:08 2005 UTC (12 years, 5 months ago) by maechler
Original Path: pkg/src
emacs-helping comment

Revision 787 - Directory Listing
Modified Thu Jun 30 16:59:12 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Still modifying glmer_devAGQ

Revision 786 - Directory Listing
Modified Tue Jun 28 13:58:41 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Developing AGQ but still not right

Revision 785 - Directory Listing
Modified Sun Jun 26 16:22:56 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Conditional modes now ok for MCMC - still need sampling methods

Revision 784 - Directory Listing
Modified Sun Jun 26 03:42:21 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
More work on MCMC (still incomplete)

Revision 783 - Directory Listing
Modified Sun Jun 26 03:41:37 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Reinstate check on number of arguments

Revision 782 - Directory Listing
Modified Fri Jun 24 23:06:33 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Adding MCMC capability (currently incomplete)

Revision 781 - Directory Listing
Modified Fri Jun 24 15:38:43 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/src
Further development on AGQ and MCMC for glmm models

Revision 779 - Directory Listing
Modified Wed Jun 15 15:52:19 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Adding AGQ (but not yet correct)

Revision 778 - Directory Listing
Modified Tue Jun 14 04:05:54 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Non-working version - needs adjustment of deviance by multiplicative factor

Revision 777 - Directory Listing
Modified Tue Jun 14 04:02:57 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
release 0.96-2

Revision 776 - Directory Listing
Modified Mon Jun 13 19:45:04 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Setting up for AGQ

Revision 775 - Directory Listing
Modified Mon Jun 13 01:22:28 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Factoring C code in preparation for AGQ

Revision 774 - Directory Listing
Modified Fri Jun 10 18:40:54 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Moving devLaplace calculations to C code

Revision 773 - Directory Listing
Modified Thu Jun 9 18:30:33 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Adding flag to skip fixed-effects terms (for use with generalized linear or nonlinear models)

Revision 772 - Directory Listing
Modified Thu Jun 9 16:57:55 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Prepare for release 0.96-1

Revision 766 - Directory Listing
Modified Tue Jun 7 23:03:34 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Isolating and cleaning up the mer, lmer, and glmer functions

Revision 765 - Directory Listing
Modified Tue Jun 7 23:03:19 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Keep -Wall quiet

Revision 764 - Directory Listing
Modified Mon Jun 6 16:03:07 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Keep -Wall quiet

Revision 762 - Directory Listing
Modified Mon Jun 6 15:52:23 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Keep -Wall quiet

Revision 761 - Directory Listing
Modified Mon Jun 6 15:51:24 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Use mer objects; Replace REML slot by method slot

Revision 758 - Directory Listing
Modified Mon Jun 6 15:46:28 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Fix matrix multiplication methods

Revision 753 - Directory Listing
Modified Sun May 29 02:15:35 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Release 0.95-11

Revision 749 - Directory Listing
Modified Fri May 20 03:17:14 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/src
Release 0.95-10

Revision 748 - Directory Listing
Modified Thu May 19 21:29:33 2005 UTC (12 years, 6 months ago) by deepayan
Original Path: pkg/src
fixed typos

Revision 747 - Directory Listing
Modified Thu May 19 17:43:42 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Incorrect version but I want to transfer it

Revision 746 - Directory Listing
Modified Wed May 18 17:03:17 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Corrected determination of slot sizes for multiple non-nested grouping factors

Revision 745 - Directory Listing
Modified Tue May 17 18:34:27 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Fold bCrosstab.[ch] into lmer.[ch]

Revision 743 - Directory Listing
Modified Tue May 17 17:45:52 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Fold bCrosstab.[ch] into lmer.[ch]

Revision 742 - Directory Listing
Modified Tue May 17 17:45:24 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Fold bCrosstab.[ch] into lmer.[ch]

Revision 741 - Directory Listing
Modified Tue May 17 17:44:02 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
collapse some constructions in the code

Revision 740 - Directory Listing
Modified Tue May 17 17:42:35 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Last update before removing these files

Revision 739 - Directory Listing
Modified Tue May 17 17:42:04 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Adding logical sparse matrix methods

Revision 738 - Directory Listing
Modified Tue May 17 17:25:31 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Added Matrix_expand_pointers (callable from R) and moved utility for duplicating slots

Revision 737 - Directory Listing
Modified Tue May 17 17:21:38 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Adding logical sparse matrix methods

Revision 736 - Directory Listing
Modified Tue May 17 17:21:04 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Adding logical sparse matrix methods

Revision 733 - Directory Listing
Modified Tue May 17 17:18:30 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Adding logical sparse matrix methods

Revision 732 - Directory Listing
Modified Tue May 17 17:18:14 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Adding logical sparse matrix methods

Revision 728 - Directory Listing
Modified Sat May 14 00:21:17 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Preparing for release 0.95-10

Revision 726 - Directory Listing
Modified Thu May 12 14:59:04 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Release 0.95-9

Revision 725 - Directory Listing
Modified Tue May 10 14:50:39 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Release 0.95-8 with bug fix for sparse symmetric solve

Revision 723 - Directory Listing
Modified Tue May 10 01:42:05 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
More logical sparse matrix methods

Revision 718 - Directory Listing
Modified Mon May 9 01:24:35 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Getting ready for a release

Revision 714 - Directory Listing
Modified Fri May 6 23:52:34 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/src
Added colSums and friends for dgeMatrix class

Revision 711 - Directory Listing
Modified Thu May 5 04:12:44 2005 UTC (12 years, 7 months ago) by deepayan
Original Path: pkg/src
Updates related to Laplace approximation

Revision 709 - Directory Listing
Modified Tue May 3 16:08:26 2005 UTC (12 years, 7 months ago) by deepayan
Original Path: pkg/src
changes related to Laplace approximation, including new function to compute parts of the deviance in C code, which doesn't currently work

Revision 705 - Directory Listing
Modified Fri Apr 29 14:42:39 2005 UTC (12 years, 7 months ago) by deepayan
Original Path: pkg/src
additions related to the Laplace approximation in glmm lmer models

Revision 700 - Directory Listing
Modified Mon Apr 18 20:21:04 2005 UTC (12 years, 8 months ago) by maechler
Original Path: pkg/src
-Wall

Revision 694 - Directory Listing
Modified Mon Apr 18 17:11:32 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/src
Give a warning, not an error, for detection of exact singularity in the LU decomposition

Revision 692 - Directory Listing
Modified Mon Apr 18 14:34:33 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/src
Release 0.95-6

Revision 688 - Directory Listing
Modified Sat Apr 2 13:18:16 2005 UTC (12 years, 8 months ago) by maechler
Original Path: pkg/src
no need for \ in %*% in error message

Revision 686 - Directory Listing
Modified Thu Mar 31 21:19:35 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/src
Create "fallback" methods for any kind of numeric, dense matrix

Revision 683 - Directory Listing
Modified Thu Mar 31 17:10:16 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/src
Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class

Revision 681 - Directory Listing
Modified Thu Mar 31 00:14:36 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/src
Repaired a thinko in the lmer_fitted function

Revision 679 - Directory Listing
Modified Wed Mar 30 14:42:36 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/src
Rename expand_column_pointers to expand_cmpPt (expand compressed pointers)

Revision 677 - Directory Listing
Modified Mon Mar 28 14:03:32 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/src
Added dgRMatrix methods and documentation

Revision 675 - Directory Listing
Modified Sat Mar 26 11:16:05 2005 UTC (12 years, 8 months ago) by maechler
Original Path: pkg/src
export csc_tcrossprod - and add examples & test for tcrossprod()

Revision 655 - Directory Listing
Modified Wed Mar 16 16:37:05 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
eliminate extraneous declaration for "-Wall"

Revision 654 - Directory Listing
Modified Wed Mar 16 16:18:33 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Generalize matrix multiplication and solve methods

Revision 653 - Directory Listing
Modified Wed Mar 16 16:17:43 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
include permutation in expand method for LU

Revision 652 - Directory Listing
Modified Wed Mar 16 01:08:36 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Updates to multiplication and other methods

Revision 649 - Directory Listing
Modified Tue Mar 15 00:59:38 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Validate function stubs for pBunchKaufman and pCholesky classes

Revision 648 - Directory Listing
Modified Tue Mar 15 00:58:37 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Zero the unused triangle in the Cholesky decomposition

Revision 643 - Directory Listing
Modified Tue Mar 15 00:50:48 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Adding many methods for the dsyMatrix class

Revision 639 - Directory Listing
Modified Tue Mar 15 00:44:02 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Coercions and methods for dppMatrix and dspMatrix classes

Revision 637 - Directory Listing
Modified Tue Mar 15 00:41:24 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Coercions and methods for dppMatrix and dspMatrix classes

Revision 635 - Directory Listing
Modified Tue Mar 15 00:40:26 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Coercions and methods for dppMatrix and dspMatrix classes

Revision 633 - Directory Listing
Modified Sun Mar 13 21:01:15 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
comments

Revision 631 - Directory Listing
Modified Sun Mar 13 04:34:52 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Add BunchKaufman factorization

Revision 629 - Directory Listing
Modified Thu Mar 10 19:00:57 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Fix dgeMatrix_dtpMatrix_mm and add test

Revision 628 - Directory Listing
Modified Thu Mar 10 17:57:47 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
more  %*% methods; some dimnames in C (untested); checks extended

Revision 622 - Directory Listing
Modified Mon Mar 7 12:45:59 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Wrong number of args in lmer_update_mm

Revision 614 - Directory Listing
Modified Sat Mar 5 21:14:43 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
L <-> U for transpose

Revision 613 - Directory Listing
Modified Sat Mar 5 21:13:40 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
+ Matrix_DimnamesSym

Revision 605 - Directory Listing
Modified Fri Mar 4 17:29:02 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
do not Calloc()/Free() in "good" case of check_scalar_string()

Revision 604 - Directory Listing
Modified Fri Mar 4 17:27:51 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
check for integer 'x'

Revision 603 - Directory Listing
Modified Fri Mar 4 12:53:01 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Define %*% method for dtpMatrix and matrix properly

Revision 599 - Directory Listing
Modified Fri Mar 4 03:49:53 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Added C function lmer_fitted

Revision 597 - Directory Listing
Modified Thu Mar 3 19:58:59 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Methods and coercions for the dtpMatrix class

Revision 592 - Directory Listing
Modified Thu Mar 3 05:16:50 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Clean up *_validate functions

Revision 591 - Directory Listing
Modified Thu Mar 3 05:16:09 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
C functions for dtpMatrix class

Revision 589 - Directory Listing
Modified Wed Mar 2 19:53:53 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
more coercions

Revision 588 - Directory Listing
Modified Wed Mar 2 18:19:51 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
shorten csc_components_transpose to csc_compTr

Revision 587 - Directory Listing
Modified Wed Mar 2 18:19:15 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
dsTMatrix_as_dsCMatrix

Revision 586 - Directory Listing
Modified Tue Mar 1 14:55:03 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
more "-Wall" dummy init.s

Revision 585 - Directory Listing
Modified Tue Mar 1 14:54:38 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
typo in SelectQueue[o]neWay; comment

Revision 582 - Directory Listing
Modified Mon Feb 28 18:15:21 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Internationalization and localization

Revision 576 - Directory Listing
Modified Sat Feb 26 18:18:30 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
prevent segfault {but not "nicely"}

Revision 575 - Directory Listing
Modified Sat Feb 26 18:07:35 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/src
use "(.)" against "-Wall" warning

Revision 572 - Directory Listing
Modified Fri Feb 25 14:11:54 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Inlined function declarations moved within the conditional expression

Revision 565 - Directory Listing
Modified Tue Feb 22 01:15:45 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Clean up documentation errors exposed by doxygen

Revision 564 - Directory Listing
Modified Sat Feb 19 03:25:17 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Fix compiler warnings

Revision 563 - Directory Listing
Modified Sat Feb 19 02:08:36 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Clean up warnings from compiler

Revision 560 - Directory Listing
Modified Fri Feb 18 14:29:53 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Argument list for cscb_trsm

Revision 559 - Directory Listing
Modified Fri Feb 18 14:29:03 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/src
Changes for non-trivial cscb-trsm

Revision 557 - Directory Listing
Modified Thu Feb 17 01:18:02 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Coercions and methods for the dsTMatrix class

Revision 556 - Directory Listing
Modified Wed Feb 16 20:49:44 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Non-trivial cscb_ldl case

Revision 555 - Directory Listing
Modified Wed Feb 16 20:49:16 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
cosmetic changes - reformating

Revision 554 - Directory Listing
Modified Wed Feb 16 13:43:45 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
clean up logic

Revision 553 - Directory Listing
Modified Wed Feb 16 13:43:17 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
clean up long lines

Revision 551 - Directory Listing
Modified Tue Feb 15 22:28:03 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
triangular, triplet sparse matrices

Revision 546 - Directory Listing
Modified Tue Feb 15 22:09:12 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Methods and coercions for the dtTMatrix class

Revision 543 - Directory Listing
Modified Sat Feb 12 13:37:46 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Changes for non-nested vector-valued random effects

Revision 536 - Directory Listing
Modified Thu Feb 10 08:15:12 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
rearranging utility functions in the C code

Revision 534 - Directory Listing
Modified Tue Feb 8 08:59:31 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/src
use mkString(); "uplo" and "diag" must be uppercase

Revision 531 - Directory Listing
Modified Mon Feb 7 11:04:53 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Include the $(SUBSTAMP) target

Revision 526 - Directory Listing
Modified Mon Feb 7 10:50:20 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Include a dependence of the LIB target on the OBJS

Revision 525 - Directory Listing
Modified Mon Feb 7 10:49:20 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Force a call to Make lib in the subdirectories whenever the SHLIB
target is built.  Right now this isn't working properly.

Revision 496 - Directory Listing
Modified Fri Feb 4 18:14:08 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/src
- get rid of two extraneous declarations
- use the SWAP(.) macro {as in other places}

Revision 495 - Directory Listing
Modified Thu Feb 3 18:48:31 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Initial implementation of the Schur generic

Revision 493 - Directory Listing
Modified Thu Feb 3 18:47:20 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Move the make_named function to Mutils as Matrix_make_named

Revision 492 - Directory Listing
Modified Thu Feb 3 14:24:03 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Getting package to pass CMD check

Revision 491 - Directory Listing
Modified Wed Feb 2 19:40:26 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
renaming and rearranging classes

Revision 490 - Directory Listing
Modified Wed Feb 2 19:13:42 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
renaming and rearranging classes

Revision 488 - Directory Listing
Modified Wed Feb 2 19:11:51 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
renaming and rearranging classes

Revision 485 - Directory Listing
Modified Wed Feb 2 17:20:55 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
renaming and rearranging classes

Revision 482 - Directory Listing
Modified Wed Feb 2 15:37:31 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
renaming and rearranging classes

Revision 479 - Directory Listing
Modified Wed Feb 2 14:52:26 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Renaming and reorganizing classes

Revision 478 - Directory Listing
Modified Wed Feb 2 14:33:51 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Renaming and reorganizing classes

Revision 476 - Directory Listing
Modified Wed Feb 2 11:51:24 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Change name of slot from factorization to factors

Revision 466 - Directory Listing
Modified Sat Jan 29 14:14:31 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Add an externally accessible entry point to lmer_Crosstab

Revision 465 - Directory Listing
Modified Sat Jan 29 14:14:01 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Add an externally accessible entry point to lmer_Crosstab

Revision 464 - Directory Listing
Modified Sat Jan 29 14:12:53 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Clean up Lind calculation

Revision 463 - Directory Listing
Modified Sat Jan 29 14:11:34 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Make make clean cleaner

Revision 461 - Directory Listing
Modified Sat Jan 29 14:09:38 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Add expm function

Revision 451 - Directory Listing
Modified Sun Jan 23 10:05:53 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
New coercion method for cscBlocked objects

Revision 448 - Directory Listing
Modified Fri Jan 21 21:59:45 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Release 0.8-23

Revision 447 - Directory Listing
Modified Fri Jan 21 12:17:56 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Change char flags to cblas enum types

Revision 445 - Directory Listing
Modified Wed Jan 19 19:06:24 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Off-diagonals from L, not ZZpO

Revision 444 - Directory Listing
Modified Wed Jan 19 19:05:15 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Off-diagonals from L, not ZZpO

Revision 443 - Directory Listing
Modified Wed Jan 19 11:28:00 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Remove references to the Linv slot.  Change to the extended parent
pairs.  Extensive changes in lmer_invert.  These still probably have
errors but this check in is to provide a checkpoint.

Revision 442 - Directory Listing
Modified Wed Jan 19 11:25:39 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
Remove any references to Linv.  Rewrite routines to use a solution
from L rather than multiplication by the inverse.  Change calling
sequences to use the Parent array.  Change the parent arrays to
extended parent pairs.

Revision 441 - Directory Listing
Modified Wed Jan 19 11:22:07 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
See if use of cblas would be a good idea

Revision 439 - Directory Listing
Modified Wed Jan 19 11:20:32 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/src
See if use of cblas would be a good idea

Revision 438 - Directory Listing
Modified Mon Jan 17 12:48:32 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Remove mistaken transpose

Revision 437 - Directory Listing
Modified Mon Jan 17 12:47:29 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Remove Linv references

Revision 434 - Directory Listing
Modified Thu Jan 13 19:36:12 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Added and modified many functions to do solutions rather than inversions.

Revision 432 - Directory Listing
Modified Thu Jan 13 19:34:37 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Define the AZERO macro

Revision 431 - Directory Listing
Modified Thu Jan 13 19:34:03 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Use the AZERO macro

Revision 430 - Directory Listing
Modified Thu Jan 13 19:32:26 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Add definitions of cscb_trsm and cscb_trcbsm

Revision 429 - Directory Listing
Modified Thu Jan 13 19:31:10 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Many changes with respect to the representation and calculation steps.

Revision 425 - Directory Listing
Modified Wed Jan 5 15:26:34 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
decrement when counting down

Revision 424 - Directory Listing
Modified Wed Jan 5 13:50:30 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Minor typos

Revision 422 - Directory Listing
Modified Tue Jan 4 23:45:15 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Check in prior to leaving for Zuerich

Revision 417 - Directory Listing
Modified Mon Jan 3 19:14:22 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Change to the lmer representation

Revision 415 - Directory Listing
Modified Mon Jan 3 19:05:11 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Change to the lmer representation

Revision 412 - Directory Listing
Modified Tue Dec 28 15:06:55 2004 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src


Revision 410 - Directory Listing
Modified Tue Dec 28 14:51:42 2004 UTC (12 years, 11 months ago) by bates
Original Path: pkg/src
Working on the lmer classes

Revision 397 - Directory Listing
Modified Thu Dec 16 19:15:32 2004 UTC (13 years ago) by bates
Original Path: pkg/src
Add arguments to ssclme_to_lme

Revision 390 - Directory Listing
Modified Tue Dec 14 19:58:55 2004 UTC (13 years ago) by bates
Original Path: pkg/src
Add a coercion for tripletMatrix to matrix

Revision 387 - Directory Listing
Modified Mon Dec 13 16:00:04 2004 UTC (13 years ago) by bates
Original Path: pkg/src
Keep -Wall happy

Revision 386 - Directory Listing
Modified Mon Dec 13 15:59:24 2004 UTC (13 years ago) by bates
Original Path: pkg/src
Fix bug in multivariate/multiple groups case

Revision 379 - Directory Listing
Modified Sat Dec 11 13:48:29 2004 UTC (13 years ago) by bates
Original Path: pkg/src
make -Wall happy

Revision 378 - Directory Listing
Modified Sat Dec 11 13:47:45 2004 UTC (13 years ago) by bates
Original Path: pkg/src
make -Wall happy

Revision 377 - Directory Listing
Modified Sat Dec 11 13:46:42 2004 UTC (13 years ago) by bates
Original Path: pkg/src
make -Wall happy

Revision 376 - Directory Listing
Modified Sat Dec 11 13:44:01 2004 UTC (13 years ago) by bates
Original Path: pkg/src
declaration of R_alloc

Revision 373 - Directory Listing
Modified Sun Dec 5 13:54:32 2004 UTC (13 years ago) by bates
Original Path: pkg/src
Fixed nested scalar r.e., multivariate bug still outstanding

Revision 372 - Directory Listing
Modified Sun Dec 5 13:53:29 2004 UTC (13 years ago) by bates
Original Path: pkg/src
R-specific versions of ldl

Revision 371 - Directory Listing
Modified Sun Dec 5 13:52:25 2004 UTC (13 years ago) by bates
Original Path: pkg/src
R-specific versions of ldl

Revision 370 - Directory Listing
Modified Sun Dec 5 13:52:06 2004 UTC (13 years ago) by bates
Original Path: pkg/src
R-specific versions of ldl

Revision 369 - Directory Listing
Modified Sun Dec 5 13:51:27 2004 UTC (13 years ago) by bates
Original Path: pkg/src
R-specific versions of ldl

Revision 368 - Directory Listing
Modified Sun Dec 5 13:50:54 2004 UTC (13 years ago) by bates
Original Path: pkg/src
R-specific versions of ldl

Revision 367 - Directory Listing
Modified Sun Dec 5 13:50:43 2004 UTC (13 years ago) by bates
Original Path: pkg/src
R-specific versions of ldl

Revision 366 - Directory Listing
Modified Sun Dec 5 13:49:51 2004 UTC (13 years ago) by bates
Original Path: pkg/src
R-specific versions of ldl

Revision 359 - Directory Listing
Modified Sat Nov 27 17:58:23 2004 UTC (13 years ago) by bates
Original Path: pkg/src
Add a call to ldl_numeric to obtain row indices of diagonal blocks of L

Revision 358 - Directory Listing
Modified Sat Nov 27 17:57:19 2004 UTC (13 years ago) by bates
Original Path: pkg/src
separate suboperations from Parent_inverse

Revision 357 - Directory Listing
Modified Sat Nov 27 17:56:13 2004 UTC (13 years ago) by bates
Original Path: pkg/src
silly typo

Revision 356 - Directory Listing
Modified Sat Nov 27 01:45:39 2004 UTC (13 years ago) by bates
Original Path: pkg/src
Add block updates in bCrosstab_convert

Revision 355 - Directory Listing
Modified Sat Nov 27 01:45:01 2004 UTC (13 years ago) by bates
Original Path: pkg/src
Make Parent_inverse visible in include file

Revision 354 - Directory Listing
Modified Sat Nov 27 01:44:15 2004 UTC (13 years ago) by bates
Original Path: pkg/src
Extract dependencies to an include file

Revision 351 - Directory Listing
Modified Tue Nov 23 15:40:28 2004 UTC (13 years ago) by bates
Original Path: pkg/src
Move include file to C sources so the .h file can be included without pulling in a bunch of other stuff

Revision 347 - Directory Listing
Modified Tue Nov 23 15:37:58 2004 UTC (13 years ago) by bates
Original Path: pkg/src
add blocked crosstabulations

Revision 345 - Directory Listing
Modified Tue Nov 23 15:35:55 2004 UTC (13 years ago) by bates
Original Path: pkg/src
keep valgrind happy

Revision 343 - Directory Listing
Modified Mon Nov 15 23:29:28 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Fix on uninitialized value

Revision 342 - Directory Listing
Modified Mon Nov 15 13:55:52 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Updates for factorization name and default value

Revision 341 - Directory Listing
Modified Fri Nov 12 21:20:14 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Use Matrix_rcondSym

Revision 340 - Directory Listing
Modified Fri Nov 12 21:19:39 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Add syrk code

Revision 339 - Directory Listing
Modified Fri Nov 12 21:19:19 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Add syrk code

Revision 338 - Directory Listing
Modified Fri Nov 12 21:17:36 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Initialize all slots

Revision 332 - Directory Listing
Modified Fri Nov 12 21:04:36 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
initialize all slots in a NEW_OBJECT

Revision 329 - Directory Listing
Modified Fri Nov 12 21:01:19 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Keep symbols and filenames consistent

Revision 328 - Directory Listing
Modified Sat Nov 6 18:05:00 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Keep Makefile.win in sync with Makefile

Revision 311 - Directory Listing
Modified Wed Oct 27 21:41:02 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Keep -Wall happy

Revision 310 - Directory Listing
Modified Wed Oct 27 21:40:08 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
add a blas-like routine

Revision 309 - Directory Listing
Modified Wed Oct 27 21:40:02 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
add a blas-like routine

Revision 308 - Directory Listing
Modified Wed Oct 27 21:39:44 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
cosmetic changes

Revision 307 - Directory Listing
Modified Wed Oct 27 21:38:58 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Changes for check on Debian dgesdd

Revision 306 - Directory Listing
Modified Wed Oct 27 21:38:33 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
Changes for check on Debian dgesdd

Revision 305 - Directory Listing
Modified Wed Oct 27 21:36:19 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
updates and downdates

Revision 304 - Directory Listing
Modified Wed Oct 27 21:35:13 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/src
lmeRep_invert now applies to multiple, nested grouping factors

Revision 301 - Directory Listing
Modified Sun Oct 17 05:06:04 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/src
transfer to another computer

Revision 300 - Directory Listing
Modified Tue Oct 12 15:44:15 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/src
Adding lmeRep_L_sm and support routines

Revision 299 - Directory Listing
Modified Fri Oct 8 14:48:06 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/src
Only positions, not counts, from crossproduct

Revision 298 - Directory Listing
Modified Fri Oct 8 13:47:20 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/src
added validate functions

Revision 297 - Directory Listing
Modified Mon Oct 4 17:13:42 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/src
Add registration of .Call functions

Revision 296 - Directory Listing
Modified Mon Oct 4 17:13:29 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/src
Add registration of .Call functions

Revision 291 - Directory Listing
Modified Sun Oct 3 21:51:33 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/src
Release 0.8-15

Revision 282 - Directory Listing
Modified Sat Oct 2 15:03:47 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/src
Bug fixes in 0.8-14

Revision 280 - Directory Listing
Modified Mon Sep 13 12:32:23 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/src
minor format change

Revision 275 - Directory Listing
Modified Fri Sep 3 18:55:14 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/src
New storage format - currently works for single grouping factor

Revision 274 - Directory Listing
Modified Thu Sep 2 23:14:51 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/src
Interim version of lmeRep - not yet complete

Revision 272 - Directory Listing
Modified Thu Sep 2 23:14:00 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/src
Add cscBlocked, tweak lmeRep

Revision 268 - Directory Listing
Modified Tue Aug 31 19:13:33 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/src
New version

Revision 264 - Directory Listing
Modified Mon Aug 30 13:24:53 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/src
Initial lmeRep_update_mm modifications for multiple grouping factors

Revision 263 - Directory Listing
Modified Thu Aug 26 16:01:35 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/src
extending lmeRep to multiple nested grouping factors

Revision 257 - Directory Listing
Modified Tue Aug 24 02:08:08 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/src
Remove taucs, add lmeRep, new release

Revision 255 - Directory Listing
Modified Fri Aug 20 16:27:15 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/src
Add the lmeRep class

Revision 250 - Directory Listing
Modified Tue Aug 17 16:50:27 2004 UTC (13 years, 4 months ago) by bates
Original Path: pkg/src
cleanup in EMsteps_verbose_print

Revision 247 - Directory Listing
Modified Mon Jul 12 17:41:57 2004 UTC (13 years, 5 months ago) by bates
Original Path: pkg/src
Combine ssclme_coef and ssclme_coefUnc, ssclme_coefGets and ssclme_coefGetsUnc.  Reorganize gradient code in preparation for Hessian calculations.

Revision 245 - Directory Listing
Modified Mon Jul 12 12:46:54 2004 UTC (13 years, 5 months ago) by bates
Original Path: pkg/src
Remove warnings, new release, change gradient calculation method

Revision 241 - Directory Listing
Modified Wed Jul 7 18:23:11 2004 UTC (13 years, 5 months ago) by bates
Original Path: pkg/src
Remove pdMat classes

Revision 238 - Directory Listing
Modified Fri Jul 2 14:36:08 2004 UTC (13 years, 5 months ago) by bates
Original Path: pkg/src
Updated Hessian method to symmetrize the result

Revision 237 - Directory Listing
Modified Thu Jul 1 03:20:33 2004 UTC (13 years, 5 months ago) by bates
Original Path: pkg/src
Added stub of a Hessian generic and methods.

Revision 209 - Directory Listing
Modified Thu Jun 3 18:22:56 2004 UTC (13 years, 6 months ago) by bates
Original Path: pkg/src
Combine the two ldl_symbolic routines

Revision 184 - Directory Listing
Modified Sun May 30 22:38:37 2004 UTC (13 years, 6 months ago) by bates
Original Path: pkg/src
Experiments with projecting

Revision 176 - Directory Listing
Modified Fri May 28 13:23:44 2004 UTC (13 years, 6 months ago) by bates
Original Path: pkg/src
Adding documentation - cleaning up code

Revision 174 - Directory Listing
Modified Wed May 19 16:45:00 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
remove unused variable

Revision 168 - Directory Listing
Modified Wed May 19 16:18:48 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Multiple factors with some ni > 1

Revision 166 - Directory Listing
Modified Sat May 15 12:59:43 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Accurate EM iteration count

Revision 164 - Directory Listing
Modified Fri May 14 21:00:04 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Moving utilities to Matrix package

Revision 159 - Directory Listing
Modified Sun May 9 22:06:53 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Remove storage of L-inverse

Revision 158 - Directory Listing
Modified Sun May 9 17:06:12 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
maxLI=0 option works

Revision 157 - Directory Listing
Modified Sun May 9 14:26:36 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
More attempts at the bVar calculation

Revision 153 - Directory Listing
Modified Fri May 7 19:35:35 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Add routines to project and ldl_symbolic the ctab

Revision 150 - Directory Listing
Modified Tue May 4 22:52:19 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Confused conflicts in checkins

Revision 149 - Directory Listing
Modified Tue May 4 22:30:39 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Previous to changing permutation method

Revision 148 - Directory Listing
Modified Mon May 3 12:49:17 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Rearranging code to isolate Metis includes

Revision 146 - Directory Listing
Modified Sat May 1 20:27:04 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Yet another permutation calculation method

Revision 143 - Directory Listing
Modified Fri Apr 30 20:33:01 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Permutations and update_mm

Revision 127 - Directory Listing
Modified Sun Apr 25 18:06:27 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Remove useLast argument

Revision 125 - Directory Listing
Modified Sun Apr 25 11:59:37 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
gradients missing when deviance missing

Revision 122 - Directory Listing
Modified Fri Apr 23 22:06:08 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Change ssclme_variances call

Revision 115 - Directory Listing
Modified Wed Apr 21 22:37:28 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
updated ssclme_collapse

Revision 114 - Directory Listing
Modified Wed Apr 21 20:45:22 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Added ssclme_collapse

Revision 113 - Directory Listing
Modified Tue Apr 20 17:34:49 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Correction for gradient and EMsteps

Revision 111 - Directory Listing
Modified Tue Apr 20 15:46:04 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Release 0.8-5

Revision 108 - Directory Listing
Modified Mon Apr 19 17:44:22 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/src
Logic error in ssclme_update_mm

Revision 106 - Directory Listing
Modified Mon Apr 19 00:48:02 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
More work on gradient (still not correct)

Revision 105 - Directory Listing
Modified Sun Apr 18 22:12:10 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Added gradient, consistent order of parameters

Revision 104 - Directory Listing
Modified Sun Apr 18 19:21:57 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
analytic gradient except for unconstrained, multidimensional case

Revision 101 - Directory Listing
Modified Sun Apr 18 14:59:53 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Add gradient calculation

Revision 100 - Directory Listing
Modified Sat Apr 17 17:03:59 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
First cut at gradient

Revision 97 - Directory Listing
Modified Sat Apr 17 16:57:42 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Cleanup of header file

Revision 93 - Directory Listing
Modified Fri Apr 16 21:19:40 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
New method of choosing between ties

Revision 86 - Directory Listing
Modified Thu Apr 15 21:40:17 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Allow useLast option in sscCrosstab_groupedPerm

Revision 85 - Directory Listing
Modified Thu Apr 15 20:50:57 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Working version of sscCrosstab_groupedPerm but about to do surgery on it

Revision 83 - Directory Listing
Modified Thu Apr 15 02:51:07 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Working version of sscCrosstab_groupedPerm - still needs work

Revision 82 - Directory Listing
Modified Wed Apr 14 23:20:06 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Updates to sscCrosstab_groupedPerm

Revision 77 - Directory Listing
Modified Wed Apr 14 20:44:19 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
New (experimental) groupedPerm

Revision 76 - Directory Listing
Modified Wed Apr 14 20:43:40 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
ssclme_EMsteps miscalculation

Revision 75 - Directory Listing
Modified Wed Apr 14 20:43:06 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Fix Makefile.win

Revision 74 - Directory Listing
Modified Wed Apr 14 16:37:24 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Original version of sscCrosstab_groupedPerm is about to be dismembered

Revision 73 - Directory Listing
Modified Tue Apr 13 15:53:38 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
R version of fill-reducing permutation

Revision 71 - Directory Listing
Modified Mon Apr 12 22:08:52 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Release 0.8-3 to fix Makefile.win

Revision 70 - Directory Listing
Modified Mon Apr 12 12:10:01 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Adding coercions - fixing bugs

Revision 57 - Directory Listing
Modified Tue Apr 6 22:09:52 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Minor change for VarCorr

Revision 52 - Directory Listing
Modified Tue Apr 6 02:54:14 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Lack of inclusion picked up by -Wall

Revision 50 - Directory Listing
Modified Tue Apr 6 02:27:37 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Removing explicit umfpack code

Revision 47 - Directory Listing
Modified Tue Apr 6 02:25:00 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Move triplet_to_col from umfpack

Revision 45 - Directory Listing
Modified Mon Apr 5 01:06:55 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Added ssclme_variances

Revision 43 - Directory Listing
Modified Tue Mar 30 23:26:33 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
remove unnecessarily complicated C code for coercion (better done in R code)

Revision 34 - Directory Listing
Modified Mon Mar 29 01:49:38 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Correct column of b[[i]] in _fitted

Revision 28 - Directory Listing
Modified Sun Mar 28 17:06:05 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Added ssclme_fitted function

Revision 22 - Directory Listing
Modified Sat Mar 27 18:17:00 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Dimensions of b-related values, dimnames

Revision 21 - Directory Listing
Modified Sat Mar 27 00:06:02 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Changing dimensions in bVar and returned value from _ranef

Revision 19 - Directory Listing
Modified Tue Mar 23 23:29:55 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Allow unconstrained coefficients

Revision 11 - Directory Listing
Modified Tue Mar 23 13:15:04 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Change name of C function ssclme_EMsteps

Revision 10 - Directory Listing
Added Mon Mar 22 20:20:05 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/src
Initial import

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