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Revision 3241 - Directory Listing
Modified Fri Nov 10 22:28:05 2017 UTC (4 weeks, 6 days ago) by mmaechler
make `depCtrl` default slightly worse (!) so it does not produce a misleading NOTE in CRAN's precheck

Revision 3240 - Directory Listing
Modified Fri Nov 10 16:40:35 2017 UTC (5 weeks ago) by mmaechler
fix chk.s() so it behaves fine with R-devel svn c73699

Revision 3239 - Directory Listing
Modified Fri Nov 10 15:48:19 2017 UTC (5 weeks ago) by mmaechler
use Authors@R; "solve(-m)"; update TODO

Revision 3232 - Directory Listing
Modified Mon Sep 4 15:23:18 2017 UTC (3 months, 1 week ago) by mmaechler
fast crossprod() and kronecker() methods for <indMatrix, indMatrix>

Revision 3226 - Directory Listing
Modified Mon Aug 21 16:00:06 2017 UTC (3 months, 3 weeks ago) by mmaechler
fix `c > 0` for "derived" class Matrix `c`

Revision 3223 - Directory Listing
Modified Tue Aug 8 16:45:10 2017 UTC (4 months, 1 week ago) by mmaechler
finally use methods option "ambiguousMethodSelection" to get rid of method dispatch ambiguity notes --- ready for CRAN

Revision 3222 - Directory Listing
Modified Tue Aug 8 16:33:52 2017 UTC (4 months, 1 week ago) by mmaechler
export .trDiagonal()

Revision 3220 - Directory Listing
Modified Sat Aug 5 12:33:48 2017 UTC (4 months, 1 week ago) by mmaechler
.Matrix.avoiding.as.matrix <- FALSE (and make it work!)

Revision 3219 - Directory Listing
Modified Sat Aug 5 11:48:00 2017 UTC (4 months, 1 week ago) by mmaechler
new .asmatrix() -- trying to deprecate as.matrix() via .Matrix.avoiding.as.matrix <- TRUE --- but this will not be released
this gives WARNING (undocumented "svn") in R < 3.5.0(= R-devel)

Revision 3218 - Directory Listing
Modified Tue Jun 20 21:24:18 2017 UTC (5 months, 3 weeks ago) by mmaechler
rankMatrix(matrix(0, *)) now gives 0 as it should

Revision 3217 - Directory Listing
Modified Sat Apr 29 18:44:08 2017 UTC (7 months, 2 weeks ago) by mmaechler
TODO about sparse.model.matrix() bugs

Revision 3211 - Directory Listing
Modified Wed Mar 8 11:01:35 2017 UTC (9 months, 1 week ago) by mmaechler
which() methods: now obeying `useNames=TRUE` [and not needing .local() wrapper

Revision 3210 - Directory Listing
Modified Wed Mar 8 09:09:49 2017 UTC (9 months, 1 week ago) by mmaechler
tweaks + examples for c.sparseVector()

Revision 3209 - Directory Listing
Modified Tue Mar 7 21:52:35 2017 UTC (9 months, 1 week ago) by mmaechler
new c.sparseVector() [S3 method, also usable directly]; fix sp2vec() {last commit}

Revision 3208 - Directory Listing
Modified Tue Mar 7 18:37:39 2017 UTC (9 months, 1 week ago) by mmaechler
+ sparseVector() without `x`

Revision 3206 - Directory Listing
Modified Thu Feb 9 16:23:17 2017 UTC (10 months ago) by mmaechler
norm(x,..) now calls base::norm when x is a traditional matrix, and allows  type="2" also for our methods, calling svd() via new (hidden) norm2().

Revision 3204 - Directory Listing
Modified Tue Feb 7 11:17:03 2017 UTC (10 months, 1 week ago) by mmaechler
indexing of sparseMatrix with NA-containing logical: error instead of segfault; 
TODO!; as(<diagonal>, "dense*"), cosmetic

Revision 3203 - Directory Listing
Modified Tue Jan 31 15:46:36 2017 UTC (10 months, 1 week ago) by mmaechler
Ops work now work e.g. for  table() + Matrix()

Revision 3195 - Directory Listing
Modified Wed Nov 23 11:08:45 2016 UTC (12 months, 3 weeks ago) by mmaechler
rep(<Matrix>, *);  subsetting sparseVectors, etc

Revision 3193 - Directory Listing
Modified Fri Sep 30 13:00:01 2016 UTC (14 months, 2 weeks ago) by mmaechler
0-length and 0-length matrix behavior with <Ops> now compatible to R (devel) 3.4.0

Revision 3192 - Directory Listing
Modified Tue Sep 27 13:23:32 2016 UTC (14 months, 2 weeks ago) by mmaechler
cosmetic; intermediate release Version 1.2-7.2

Revision 3191 - Directory Listing
Modified Tue Sep 27 13:22:15 2016 UTC (14 months, 2 weeks ago) by mmaechler
+ class "numericVector" and  class union  "Mnumeric"
-- both *not* exported (yet)

Revision 3189 - Directory Listing
Modified Sat Sep 10 16:04:28 2016 UTC (15 months ago) by mmaechler
document unsuccessful attempt to "working" c()

Revision 3185 - Directory Listing
Modified Sat Aug 27 10:11:27 2016 UTC (15 months, 2 weeks ago) by mmaechler
update for releasing 1.2-7

Revision 3184 - Directory Listing
Modified Sat Aug 27 10:08:32 2016 UTC (15 months, 2 weeks ago) by mmaechler
KhatriRao(X,Y) for all-0-arguments

Revision 3183 - Directory Listing
Modified Fri Aug 19 15:47:35 2016 UTC (15 months, 3 weeks ago) by mmaechler
bandSparse() : now return "triangularMatrix" whenever obvious

Revision 3180 - Directory Listing
Modified Wed Aug 3 09:23:22 2016 UTC (16 months, 1 week ago) by mmaechler
once-per-session deprecation warning for cBind() / rBind()

Revision 3178 - Directory Listing
Modified Sat Jun 4 13:46:12 2016 UTC (18 months, 1 week ago) by mmaechler
sparse.model.matrix: "sync" with current  model.matrix.default()

Revision 3174 - Directory Listing
Modified Wed Apr 27 21:19:38 2016 UTC (19 months, 2 weeks ago) by mmaechler
Version 1.2-6: fix wrong warnings from 1.2-5

Revision 3172 - Directory Listing
Modified Thu Apr 14 16:01:45 2016 UTC (20 months ago) by mmaechler
oops; cut/n/paste thinko

Revision 3171 - Directory Listing
Modified Thu Apr 14 15:35:02 2016 UTC (20 months ago) by mmaechler
get ready for R 3.3.0 -- one "long index" bug fix postponed!!

Revision 3169 - Directory Listing
Modified Thu Apr 14 15:13:58 2016 UTC (20 months ago) by mmaechler
isSymmetric() update from "R-devel"

Revision 3167 - Directory Listing
Modified Sat Apr 9 21:52:14 2016 UTC (20 months ago) by mmaechler
- fix  Diagonal(.) %*%  0-extent dense
- fast isSymmetric(<dense asymmetric large>)
- isSymmetric() now works for  "indMatrix"

Revision 3165 - Directory Listing
Modified Tue Apr 5 07:39:08 2016 UTC (20 months, 1 week ago) by mmaechler
JMC has deprecated 'representation' for 3.0.0 end of 2012 ..
--> high time we use 'slots' and 'contains' only

Revision 3158 - Directory Listing
Modified Tue Jan 26 10:45:46 2016 UTC (22 months, 2 weeks ago) by mmaechler
sparseMatrix(...., triangular ..); docu updates

Revision 3154 - Directory Listing
Modified Mon Nov 16 14:58:47 2015 UTC (2 years ago) by mmaechler
change as.vector() from [two-argument] multi dispatch to single dispatch (so it works with current R-devel) - thanks to patch from Michael Lawrence

Revision 3153 - Directory Listing
Modified Mon Nov 16 14:38:14 2015 UTC (2 years ago) by mmaechler
more printSpMatrix2() changes and minimal documentation;
NB: probably tobe improved in the future

Revision 3151 - Directory Listing
Modified Fri Nov 13 12:42:35 2015 UTC (2 years, 1 month ago) by mmaechler
use `%||%` {as seen in `covr` package} instead of `if.NULL()`

Revision 3149 - Directory Listing
Modified Wed Nov 11 11:32:05 2015 UTC (2 years, 1 month ago) by mmaechler
(belongs to 3148)

Revision 3148 - Directory Listing
Modified Wed Nov 11 11:31:20 2015 UTC (2 years, 1 month ago) by mmaechler
cbind2(), rbind2() for matrices with NA`s now work

Revision 3146 - Directory Listing
Modified Thu Oct 8 15:52:08 2015 UTC (2 years, 2 months ago) by mmaechler
rename hidden .solve.sparse.dgC() to .solve.dgC.lu() *and* export

Revision 3143 - Directory Listing
Modified Wed Sep 2 21:29:32 2015 UTC (2 years, 3 months ago) by mmaechler
export MatrixClass() - and use e.g., in "Math", fixing bug in n.CMatrix treatment for "extended" class; similarly fix as(<>, *) for that case

Revision 3138 - Directory Listing
Modified Wed Aug 12 15:43:29 2015 UTC (2 years, 4 months ago) by mmaechler
get rid of all  setIs(..) -- which __ALL__ where "if(FALSE)"d

Revision 3128 - Directory Listing
Modified Tue Jun 2 08:08:16 2015 UTC (2 years, 6 months ago) by mmaechler
open version 1.2-2; now names( colSums() ) are as in "base"

Revision 3123 - Directory Listing
Modified Sat May 30 15:54:44 2015 UTC (2 years, 6 months ago) by mmaechler
new .fixupDimnames(), used in sparseMatrix(), "initialize", etc

Revision 3120 - Directory Listing
Modified Fri May 29 14:51:08 2015 UTC (2 years, 6 months ago) by mmaechler
fix crossprod(<matrix>, Diagonal(<n>)) and many such cases; also "dtrMatrix" ones.
 => also fix Matrix(<named diag>) losing dimnames.
Pretty systematic testing of matrix products including dimnames

Revision 3115 - Directory Listing
Modified Tue May 19 16:34:46 2015 UTC (2 years, 6 months ago) by mmaechler
lu() and qr() now keep dimnames, i.e. propagate them to the factorization, at least for sparse Matrices; not quite ok for sparseQR yet

Revision 3114 - Directory Listing
Modified Tue May 19 16:33:13 2015 UTC (2 years, 6 months ago) by mmaechler
new C utilities dim_validate(), Dim_validate() and  dimNames_validate();
MatrixFactorization class gets `Dimnames`;
new MatrixFactorization_validate();
save install()ed symbols for "beta" and "V"

Revision 3113 - Directory Listing
Modified Tue May 19 16:13:32 2015 UTC (2 years, 6 months ago) by mmaechler
using lengths() {with a pre-3.2.0 substitute definition}

Revision 3112 - Directory Listing
Modified Tue May 19 16:10:33 2015 UTC (2 years, 6 months ago) by mmaechler
dimnames(<compMatrix>) <- V  now cleans `factors` cache slot

Revision 3109 - Directory Listing
Modified Mon May 11 13:55:18 2015 UTC (2 years, 7 months ago) by mmaechler
image(.) now does forward `...` to methods.

Revision 3104 - Directory Listing
Modified Fri May 8 06:46:18 2015 UTC (2 years, 7 months ago) by mmaechler
as.vector(<sparseVector>) etc via S3 (I say "hack")

Revision 3100 - Directory Listing
Modified Tue May 5 12:51:33 2015 UTC (2 years, 7 months ago) by mmaechler
fix the other two bugs (from P.Ralph) "<dgT>[] <- "

Revision 3099 - Directory Listing
Modified Mon May 4 15:09:25 2015 UTC (2 years, 7 months ago) by mmaechler
fix the  x[] <- <sparse>  bug found by Peter Ralph

Revision 3098 - Directory Listing
Modified Mon May 4 08:57:17 2015 UTC (2 years, 7 months ago) by mmaechler
drop explicit generic for toeplitz()

Revision 3095 - Directory Listing
Modified Fri Apr 3 21:05:49 2015 UTC (2 years, 8 months ago) by mmaechler
define the new "intermediate" hidden virtual classes as classUnion - 
so packages such as quadruped can use "Matrix" in its own classUnion without warning

Revision 3092 - Directory Listing
Modified Thu Apr 2 10:56:59 2015 UTC (2 years, 8 months ago) by mmaechler
more using of ..2dge() and anyNA(); 
testing %&% in test-tools  checkMatrix()

Revision 3091 - Directory Listing
Modified Thu Apr 2 10:17:59 2015 UTC (2 years, 8 months ago) by mmaechler
%&% :  <sparseVector> methods

Revision 3089 - Directory Listing
Modified Thu Apr 2 08:40:30 2015 UTC (2 years, 8 months ago) by mmaechler
cBind / rBind   for R >= 3.2.0 :  
Deprecation warnings only if Matrix.warn/Matrix.verbose option is set.

Revision 3088 - Directory Listing
Modified Thu Apr 2 08:29:03 2015 UTC (2 years, 8 months ago) by mmaechler
as(*, "nMatrix") now is allowed also for dense matrices with NA`s

Revision 3085 - Directory Listing
Modified Wed Apr 1 15:30:42 2015 UTC (2 years, 8 months ago) by mmaechler
also belongs to r3084

Revision 3084 - Directory Listing
Modified Wed Apr 1 14:54:53 2015 UTC (2 years, 8 months ago) by mmaechler
rename nC2d/nC2l to .nC2d / .nC2l and export

Revision 3083 - Directory Listing
Modified Wed Apr 1 14:46:57 2015 UTC (2 years, 8 months ago) by mmaechler
.C2nC() low-level; export

Revision 3079 - Directory Listing
Modified Tue Mar 31 15:29:43 2015 UTC (2 years, 8 months ago) by mmaechler
full (hope ! ;-) support for [t]crossprod(*, boolArith=TRUE)

Revision 3075 - Directory Listing
Modified Mon Mar 30 10:21:58 2015 UTC (2 years, 8 months ago) by mmaechler
rsparseMatrix(*, rand.x=NULL) now creates a random pattern matrix

Revision 3072 - Directory Listing
Modified Fri Mar 27 15:10:48 2015 UTC (2 years, 8 months ago) by mmaechler
advances in boolean arithmetic matrix products: 
%&% and [t]crossprod(*, boolArith = *)

Revision 3069 - Directory Listing
Modified Thu Mar 26 10:00:49 2015 UTC (2 years, 8 months ago) by mmaechler
Fixed FIXME: Csparse o dense - matrix products: now *all*  t() happen in C,
partly thanks to our new  chm_transpose_dense() function.
Csparse o Csparse : now have `boolArith` argument {not entirely finished}
New %&% : Boolean Arithmetic Matrix products      {not entirely finished}
C level: <sparse pattern> o <sparse numeric> : now return numeric "by default" / pattern "on demand"

Revision 3066 - Directory Listing
Modified Thu Mar 19 14:27:05 2015 UTC (2 years, 8 months ago) by mmaechler
rbind2(<dense>, <dense>) use new C R_rbind_vector()

Revision 3065 - Directory Listing
Modified Thu Mar 19 11:45:28 2015 UTC (2 years, 8 months ago) by mmaechler
fix rbind2() bug which was introduced with rev 3052, 5 days ago

Revision 3064 - Directory Listing
Modified Tue Mar 17 10:49:42 2015 UTC (2 years, 9 months ago) by mmaechler
drop the "skinny" restriction in indMatrix

Revision 3059 - Directory Listing
Modified Mon Mar 16 17:40:18 2015 UTC (2 years, 9 months ago) by mmaechler
export and speedup  uniqTsparse(); also export anyDuplicatedT()
Improve the documentation about "non-unique Tsparse" matrices etc.
next Version: 1.2-0

Revision 3058 - Directory Listing
Modified Mon Mar 16 17:37:51 2015 UTC (2 years, 9 months ago) by mmaechler
fix crossprod(<indMatrix>) thanks to Harm Jan Boonstra @ Statistics NL

Revision 3055 - Directory Listing
Modified Sat Mar 14 21:12:03 2015 UTC (2 years, 9 months ago) by mmaechler
symmetric Matrices -- allow to have dimnames list(NULL, <names>) or list(<names>, NULL) 
and print correctly and are coerced correctly to general matrices etc.
More use of new  stopifnotValid() in tests/

Revision 3052 - Directory Listing
Modified Sat Mar 14 20:52:14 2015 UTC (2 years, 9 months ago) by mmaechler
cbind2(), rbind2() new checks [part of a set of commits]

Revision 3051 - Directory Listing
Modified Sat Mar 14 12:14:06 2015 UTC (2 years, 9 months ago) by mmaechler
t(.) should transpose dimnames, even for symmetric matrices

Revision 3048 - Directory Listing
Modified Mon Mar 2 09:52:32 2015 UTC (2 years, 9 months ago) by mmaechler
deprecating cBind()/rBind() for R >= 3.2.0

Revision 3046 - Directory Listing
Modified Mon Feb 16 14:40:37 2015 UTC (2 years, 9 months ago) by mmaechler
eliminate unused assignments (from "R-devel CMD check")

Revision 3045 - Directory Listing
Modified Mon Feb 16 14:39:35 2015 UTC (2 years, 9 months ago) by mmaechler
use '...' in all [cr]bind2() methods -- getting rid of most  .local()s

Revision 3033 - Directory Listing
Modified Fri Jan 16 15:47:57 2015 UTC (2 years, 10 months ago) by mmaechler
export a wrapper of the dgCMatrix_cholsol and dgCMatrix_qrsol C functions used in package MatrixModels

Revision 3031 - Directory Listing
Modified Fri Jan 16 15:44:17 2015 UTC (2 years, 10 months ago) by mmaechler
want to use anyNA() in our code, even for R < 3.1.0	{should test}

Revision 3030 - Directory Listing
Modified Fri Jan 16 14:55:43 2015 UTC (2 years, 10 months ago) by mmaechler
- Fix validity messages
- Michael L: Patch the initialize() method for "sparseVector" such that it works both in
  current R and in current R-devel

Revision 3027 - Directory Listing
Modified Sat Jan 10 19:32:47 2015 UTC (2 years, 11 months ago) by mmaechler
.solve.sparse.dgC(): better error msg when b[] is of wrong length / dimension

Revision 3023 - Directory Listing
Modified Sat Dec 20 22:29:49 2014 UTC (2 years, 11 months ago) by mmaechler
tril() and triu() now return correct uplo (if at all)

Revision 3020 - Directory Listing
Modified Tue Oct 14 16:14:02 2014 UTC (3 years, 2 months ago) by mmaechler
dimnames(), notably names(dimnames()) -- primarily in connection with symmpart(), skewpart() and forceSymmetric()

Revision 3018 - Directory Listing
Modified Sat Oct 11 17:52:10 2014 UTC (3 years, 2 months ago) by mmaechler
Fix remaining parts of R-(3.2.0) compatible behavior of matrix products (%*%, [t]crossprod) -- including previous bug of wrong m %*% v in one case

Revision 3017 - Directory Listing
Modified Sat Oct 11 17:49:38 2014 UTC (3 years, 2 months ago) by mmaechler
fix R-forge bug #2556 -- names(dimnames(<sp>[i,j]))

Revision 3015 - Directory Listing
Modified Tue Oct 7 10:56:03 2014 UTC (3 years, 2 months ago) by mmaechler
as(<matrix>, "triangularMatrix") via new mat2tri();
isTriangular() now has optional `upper = NA` also in the *generic*

Revision 3013 - Directory Listing
Modified Tue Oct 7 08:24:12 2014 UTC (3 years, 2 months ago) by mmaechler
revert 3012: .local() stays

Revision 3012 - Directory Listing
Modified Tue Oct 7 07:19:09 2014 UTC (3 years, 2 months ago) by mmaechler
add '...' to the major isTri*() utilities --> so .local() is not needed 
in the corresponding isTriangular() methods.

Revision 3010 - Directory Listing
Modified Mon Oct 6 16:59:57 2014 UTC (3 years, 2 months ago) by mmaechler
fixing R-forge Matrix bug #5933 (matrix-matrix prod with 0-extents)
R-(3.2.0) compatible behavior of matrix products (%*%, [t]crossprod), now at least for
sparseVectors

Revision 3009 - Directory Listing
Modified Mon Oct 6 13:49:41 2014 UTC (3 years, 2 months ago) by mmaechler
deprecate rSparseMatrix() from "test-tools"

Revision 3002 - Directory Listing
Modified Mon Sep 1 15:31:40 2014 UTC (3 years, 3 months ago) by mmaechler
cosmetic

Revision 3000 - Directory Listing
Modified Tue Aug 12 10:29:50 2014 UTC (3 years, 4 months ago) by mmaechler
"Math" and "Summary" methods now put in one (newly created) file; more tests for these..

Revision 2999 - Directory Listing
Modified Tue Aug 12 10:28:26 2014 UTC (3 years, 4 months ago) by mmaechler
fix/speed up coercions from/to symmetric/triangular

Revision 2998 - Directory Listing
Modified Tue Aug 12 10:27:15 2014 UTC (3 years, 4 months ago) by mmaechler
changes & fixes to %*%, crossprod(),.. notably for diagonal matrices

Revision 2996 - Directory Listing
Modified Thu Aug 7 18:44:26 2014 UTC (3 years, 4 months ago) by mmaechler
do validity checks using  dense_nonpacked_validate directly

Revision 2993 - Directory Listing
Modified Sat Jun 14 16:21:38 2014 UTC (3 years, 6 months ago) by mmaechler
crossprod() and kronecker() where wrong for some <indMatrix>; fix from Fabian Scheibl

Revision 2992 - Directory Listing
Modified Sat Jun 14 15:50:25 2014 UTC (3 years, 6 months ago) by mmaechler
chk.s() improvements

Revision 2991 - Directory Listing
Modified Sat Jun 14 15:49:51 2014 UTC (3 years, 6 months ago) by mmaechler
more info in Matrix.msg()

Revision 2990 - Directory Listing
Modified Thu May 8 10:31:52 2014 UTC (3 years, 7 months ago) by mmaechler
fix crossprod(<vec>, <dsyMatrix>) bug, sent from David Ruegamer, LMU.
Keep dimnames in (some more of) such products

Revision 2989 - Directory Listing
Modified Mon Apr 28 20:32:22 2014 UTC (3 years, 7 months ago) by mmaechler
pass 'tol' down to solve(*,*) in   (dgCMatrix, dsparseMatrix)  method

Revision 2987 - Directory Listing
Modified Sat Apr 26 19:14:30 2014 UTC (3 years, 7 months ago) by mmaechler
new rsparsematrix() {with 'encoding trick'} for random sparse matrices;  
m_encodeInd[2]?() gains new argument 'orig_1'

Revision 2986 - Directory Listing
Modified Sat Apr 12 22:21:14 2014 UTC (3 years, 8 months ago) by mmaechler
.set.factors(x, *) now also works when 'x' has no 'factors' slot

Revision 2984 - Directory Listing
Modified Sat Apr 12 21:37:37 2014 UTC (3 years, 8 months ago) by mmaechler
chol(), Cholesky() {and some remnant rcond()...} updates, thanks to Roger Bivand`s questions

Revision 2980 - Directory Listing
Modified Thu Mar 27 09:30:57 2014 UTC (3 years, 8 months ago) by mmaechler
collect translators (for e-mail); not using "dtrMatrices" for better translations

Revision 2978 - Directory Listing
Modified Wed Mar 26 18:17:09 2014 UTC (3 years, 8 months ago) by mmaechler
using .hasSlot() is faster than checking for "compMatrix"

Revision 2977 - Directory Listing
Modified Wed Mar 26 18:16:16 2014 UTC (3 years, 8 months ago) by mmaechler
better translatable messages (modified suggestions of Lukasz Daniel) + his polish translations

Revision 2975 - Directory Listing
Modified Mon Mar 24 17:46:07 2014 UTC (3 years, 8 months ago) by mmaechler
workaround fact that R`s  DispatchOrEval() {in coerce.c`s do_anyNA()} 
fails to dispatch for "xMatrix" (even when that would be exported as class)

Revision 2970 - Directory Listing
Modified Wed Mar 12 18:44:33 2014 UTC (3 years, 9 months ago) by mmaechler
fix ylim default computation buglet in image(<sparse>)

Revision 2966 - Directory Listing
Modified Tue Mar 4 07:35:12 2014 UTC (3 years, 9 months ago) by mmaechler
cosmetic; options(warn=1) in tests; ready for CRAN

Revision 2964 - Directory Listing
Modified Wed Jan 29 09:52:48 2014 UTC (3 years, 10 months ago) by mmaechler
two more cases where all.equal(*, tol=) has to use 'tolerance'

Revision 2963 - Directory Listing
Modified Wed Jan 29 09:52:18 2014 UTC (3 years, 10 months ago) by mmaechler
finally activate  anyNA() for R >= 3.1.0 (instead of " > " !)

Revision 2960 - Directory Listing
Modified Tue Jan 28 15:34:21 2014 UTC (3 years, 10 months ago) by mmaechler
A few things at once:
1) all.equal(*,..): "tolerance" instead of "tol";  "check.attributes"
2) All matrix products (%*%, [t]crossprod) in one new *.Rd file: man/matrix-products.Rd
3) R/products.R : Extend matrix products (and consistency tests) 
   a. to work with sparseVectors, 
   b. to correctly work in some cases they did not
   c. to be faster in other cases

Revision 2959 - Directory Listing
Modified Mon Jan 20 16:24:19 2014 UTC (3 years, 10 months ago) by mmaechler
new .dsy2mat(), .dxCmat(), .T2Cmat(); faster as(<dtCmatrix>, "matrix")

Revision 2954 - Directory Listing
Modified Sat Dec 28 15:36:45 2013 UTC (3 years, 11 months ago) by mmaechler
docu cosmetics

Revision 2952 - Directory Listing
Modified Mon Dec 23 21:21:45 2013 UTC (3 years, 11 months ago) by mmaechler
rankMatrix(*, method="qr.R") also for dense.. is "better" as it seems scale independent

Revision 2950 - Directory Listing
Modified Mon Dec 23 19:52:35 2013 UTC (3 years, 11 months ago) by mmaechler
M [negative indices] <- value; 
and an occasional bug in <sparseM>[cbind(i,j)]

Revision 2949 - Directory Listing
Modified Mon Dec 23 14:09:05 2013 UTC (3 years, 11 months ago) by mmaechler
nicer default behavior of image(<Matrix>, xlim, ylim)

Revision 2948 - Directory Listing
Modified Sat Dec 21 22:27:07 2013 UTC (3 years, 11 months ago) by mmaechler
work around R-devel`s new false positive "Note"

Revision 2947 - Directory Listing
Modified Sat Dec 21 11:39:57 2013 UTC (3 years, 11 months ago) by mmaechler
rankMatrix(.., tol= .) tolerance now *relative* in all cases

Revision 2945 - Directory Listing
Modified Thu Dec 19 13:52:00 2013 UTC (3 years, 11 months ago) by mmaechler
new check.gT2sT(); 
clean up in check.gT2tT(); 
more use of all0(.); 
some more coercions of n..Matrix

Revision 2943 - Directory Listing
Modified Thu Dec 19 13:48:24 2013 UTC (3 years, 11 months ago) by mmaechler
replTmat(): careful dealing for case of x = "nsparseMatrix", 
	    notably with   value = NA

Revision 2942 - Directory Listing
Modified Thu Dec 19 13:47:11 2013 UTC (3 years, 11 months ago) by mmaechler
- replCmat(): also work with nsparse
- allow i = "Matrix" (in addition to "matrix")

Revision 2939 - Directory Listing
Modified Tue Dec 17 10:25:54 2013 UTC (3 years, 11 months ago) by mmaechler
sparseMatrix(): new  use.last.ij  argument

Revision 2938 - Directory Listing
Modified Mon Dec 16 22:51:12 2013 UTC (3 years, 11 months ago) by mmaechler
all0() and any0() now via .Call(R_all0,..)

Revision 2937 - Directory Listing
Modified Mon Dec 16 10:38:02 2013 UTC (4 years ago) by mmaechler
use rep_len(.) [with wrapper for R < 3.0.0]

Revision 2934 - Directory Listing
Modified Mon Dec 2 15:56:50 2013 UTC (4 years ago) by mmaechler
T2graph() and graph2T() export old functionality explicitly; 
tweaks in  <graph>  <->  <sparseMatrix>  conversions.  Notably,
as(<graph>, <Matrix>) now more often returns an "n..Matrix" (0/1 pattern), instead of a numeric 
sparse Matrix with all x = 1.

Revision 2933 - Directory Listing
Modified Sun Nov 24 16:02:10 2013 UTC (4 years ago) by mmaechler
rankMatrix(); method="qr" as it is not related to LINPACK for the important case of sparse x:  It now uses *tol* to count non-zero entries in diag(R)

Revision 2932 - Directory Listing
Modified Sun Nov 24 15:38:09 2013 UTC (4 years ago) by mmaechler
qr.coef(), qr.fitted, and qr.resid also work with sparse RHS y

Revision 2931 - Directory Listing
Modified Mon Oct 28 08:25:44 2013 UTC (4 years, 1 month ago) by mmaechler
fix rownames (X <-> Y)

Revision 2930 - Directory Listing
Modified Mon Oct 21 10:02:21 2013 UTC (4 years, 1 month ago) by mmaechler
Version 1.1-0: as have C API change; class union "numIndex" is unused (and can harm, as it is not exported

Revision 2927 - Directory Listing
Modified Sat Sep 28 18:50:51 2013 UTC (4 years, 2 months ago) by mmaechler
Matrix 1.0-16: *no* "Depends", just "Imports"

Revision 2926 - Directory Listing
Modified Sat Sep 28 16:37:11 2013 UTC (4 years, 2 months ago) by mmaechler
fix 'x.dense' definition:  a traditional (non-Matrix) matrix is also dense !!

Revision 2923 - Directory Listing
Modified Thu Sep 26 16:38:00 2013 UTC (4 years, 2 months ago) by mmaechler
export fac2sparse() and fac2Sparse(), after adding new giveCsparse option

Revision 2922 - Directory Listing
Modified Thu Sep 26 16:36:49 2013 UTC (4 years, 2 months ago) by mmaechler
slightly cleaner use of local di2tT

Revision 2921 - Directory Listing
Modified Mon Sep 23 20:36:59 2013 UTC (4 years, 2 months ago) by mmaechler
dpoMatrix -> corMatrix: use cache and set cache also from R level

Revision 2916 - Directory Listing
Modified Mon Sep 16 14:09:40 2013 UTC (4 years, 2 months ago) by mmaechler
new .SuiteSparse_version()

Revision 2912 - Directory Listing
Modified Sat Sep 14 17:09:49 2013 UTC (4 years, 3 months ago) by mmaechler
also fix the r2910-related solve(<dsC.>, <dense>) bug; more testing if(doExtras), "As" example as *.rda

Revision 2910 - Directory Listing
Modified Fri Sep 13 15:42:07 2013 UTC (4 years, 3 months ago) by mmaechler
now we have fixed the long standing underlying solve(<dsC>)-bug,
we also revert the 1.0-13 __ 1.0-14 stop-gap fix from yesterday

Revision 2909 - Directory Listing
Modified Fri Sep 13 12:51:21 2013 UTC (4 years, 3 months ago) by mmaechler
regression checks for the long-time undetected solve(<dsC..>, *) bug

Revision 2908 - Directory Listing
Modified Fri Sep 13 12:50:06 2013 UTC (4 years, 3 months ago) by mmaechler
solve.dsC.dC(): long-lasting undetected bug: We forget the Q in P'LUQ
-------------  --> now use .solve.sparse.dgC() anyway

Revision 2907 - Directory Listing
Modified Thu Sep 12 22:22:41 2013 UTC (4 years, 3 months ago) by mmaechler
partly revert the solve(<sparse>, .) changes

Revision 2906 - Directory Listing
Modified Thu Sep 12 22:22:09 2013 UTC (4 years, 3 months ago) by mmaechler
all.equal() no longer returns c("TRUE", "...difference..")

Revision 2904 - Directory Listing
Modified Tue Sep 10 19:43:53 2013 UTC (4 years, 3 months ago) by mmaechler
export isDiagonal() and isTriangular(): other package like to use them

Revision 2901 - Directory Listing
Modified Tue Sep 10 10:45:25 2013 UTC (4 years, 3 months ago) by mmaechler
new  Csparse_to_vector() in C --> faster as(*, "vector") methods

Revision 2900 - Directory Listing
Modified Wed Sep 4 08:30:53 2013 UTC (4 years, 3 months ago) by mmaechler
generalize "indMatrix" to allow "0 samples"; colSums() etc; rbind2().
A  %*% tweak for <ldense> o <lsparse>

Revision 2899 - Directory Listing
Modified Tue Sep 3 13:31:16 2013 UTC (4 years, 3 months ago) by mmaechler
pMatrix -> matrix  now from indMatrix method

Revision 2898 - Directory Listing
Modified Mon Sep 2 15:48:30 2013 UTC (4 years, 3 months ago) by mmaechler
3 new C-->R utilities; notably R_set_factors() -> .set.factors() for caching also from R, not just in C

Revision 2896 - Directory Listing
Modified Sun Sep 1 18:50:16 2013 UTC (4 years, 3 months ago) by mmaechler
use local variable rather than  dontCheck()

Revision 2894 - Directory Listing
Modified Thu Aug 29 20:10:08 2013 UTC (4 years, 3 months ago) by mmaechler
indMatrix - related updates; notably MatrixClass() was "wrong"

Revision 2893 - Directory Listing
Modified Thu Aug 29 20:09:06 2013 UTC (4 years, 3 months ago) by mmaechler
fix two buglets:
- had "perm" instead of "index";
- tabulate() needs nbin = <.> in some cases

Revision 2892 - Directory Listing
Modified Thu Aug 29 09:58:34 2013 UTC (4 years, 3 months ago) by mmaechler
new indMatrix class from Fabian Scheibl

Revision 2891 - Directory Listing
Modified Fri Aug 16 14:09:01 2013 UTC (4 years, 4 months ago) by mmaechler
determinant(<dpoMatrix>) now goes via chol(), i.e. also just using an existing (cached) Cholesky factor

Revision 2890 - Directory Listing
Modified Thu Aug 15 17:34:48 2013 UTC (4 years, 4 months ago) by mmaechler
- fix thinko at at end of solve.sparse.dgC()
- add 'tol' to solve.dgC() and the dependent solve() methods

Revision 2889 - Directory Listing
Modified Thu Aug 8 21:06:22 2013 UTC (4 years, 4 months ago) by mmaechler
Provide  sparse solve() methods for <dgCMatrix> that work via LU decomp.
"Cheap" fix for the lu() -> sometimes/occasionally unsorted columns in resulting L / U matrix bug:
In C, have new  Csparse_sort2(.) version of Csparse_validate() and in 
R a .sortCsparse(.) using .Call(Csparse_sort, x) -- seems to work ok... but want tests and docu;
also can be quite a bit more efficient already in C; -- TODOs

Revision 2886 - Directory Listing
Modified Wed Jul 31 08:33:52 2013 UTC (4 years, 4 months ago) by mmaechler
new optional argument  conv.norm.type="I" 

Revision 2885 - Directory Listing
Modified Fri Jul 26 20:49:21 2013 UTC (4 years, 4 months ago) by mmaechler
solve(<sparse> a, <sparse> b): now if a is symmetric, compute *sparse* result

Revision 2882 - Directory Listing
Modified Thu Jul 4 13:52:42 2013 UTC (4 years, 5 months ago) by mmaechler
using  dontCheck(.)  for latest CRAN checks .. 
but it seems, in vain, for the moment

Revision 2881 - Directory Listing
Modified Wed Jul 3 10:14:19 2013 UTC (4 years, 5 months ago) by mmaechler
provide anyNA(.) methods, for R >= 3.1.0

Revision 2880 - Directory Listing
Modified Wed Jul 3 10:13:08 2013 UTC (4 years, 5 months ago) by mmaechler
rankMatrix(): method="qr.." no longer needs sval --> even more useful for large sparse

Revision 2877 - Directory Listing
Modified Wed May 8 20:59:04 2013 UTC (4 years, 7 months ago) by mmaechler
fix "M[] <- v" bug for unitriangular M

Revision 2876 - Directory Listing
Modified Wed May 8 20:57:08 2013 UTC (4 years, 7 months ago) by mmaechler
cosmetic

Revision 2875 - Directory Listing
Modified Tue May 7 13:26:35 2013 UTC (4 years, 7 months ago) by mmaechler
new KhatriRao()

Revision 2872 - Directory Listing
Modified Tue Mar 26 15:38:09 2013 UTC (4 years, 8 months ago) by mmaechler
translation updates via tools::update_pkg_po(); test output; cosmetic

Revision 2871 - Directory Listing
Modified Tue Mar 26 15:24:42 2013 UTC (4 years, 8 months ago) by mmaechler
re-add a space lost by Lukasz (easier translatable) patches

Revision 2867 - Directory Listing
Modified Sat Feb 2 18:31:28 2013 UTC (4 years, 10 months ago) by mmaechler
Schur(m) now also works for a traditional matrix m

Revision 2865 - Directory Listing
Modified Wed Jan 30 11:14:48 2013 UTC (4 years, 10 months ago) by mmaechler
new utility  is.null.DN() - also used for Matrix construction

Revision 2863 - Directory Listing
Modified Mon Dec 31 20:21:11 2012 UTC (4 years, 11 months ago) by mmaechler
more easily translatable message - "as" from Lukasz Daniel (e: Dec.12, 2012)

Revision 2862 - Directory Listing
Modified Mon Dec 31 14:38:40 2012 UTC (4 years, 11 months ago) by mmaechler
cosmetic; more qr(<rank deficient>) examples

Revision 2857 - Directory Listing
Modified Fri Dec 28 08:57:10 2012 UTC (4 years, 11 months ago) by mmaechler
use "domain = NA" wherever  gettextf() is used in stop/warning/message

Revision 2856 - Directory Listing
Modified Sat Dec 8 20:30:52 2012 UTC (5 years ago) by mmaechler
as(., "dsCMatrix")  -- deprecation *every* time

Revision 2855 - Directory Listing
Modified Fri Dec 7 07:44:54 2012 UTC (5 years ago) by mmaechler
new isSeq(i, n) ( <==> identical(i, 0:n) ) primitive; qr.qy(qq,y) now returns "vector" when y is one

Revision 2854 - Directory Listing
Modified Thu Nov 22 07:54:41 2012 UTC (5 years ago) by mmaechler
qr(<sparse>) --> <sparseQR> : finally address the structurally rank-deficient case where cs_sqr() produces "spurious" extra rows in Q i.e. V, and R; add checking code for that case

Revision 2853 - Directory Listing
Modified Thu Nov 22 07:52:08 2012 UTC (5 years ago) by mmaechler
provide fast C version and export  invPerm()

Revision 2852 - Directory Listing
Modified Sun Nov 18 16:58:18 2012 UTC (5 years ago) by mmaechler
finally *activate* the sparseQR validity method that Doug wrote in Aug.2006 (!)

Revision 2851 - Directory Listing
Modified Mon Nov 12 14:17:09 2012 UTC (5 years, 1 month ago) by mmaechler
 as(<csr>, "dgCMatrix") works again; Matrix now *runs* in older R even if installed in R >= 2.15.2

Revision 2845 - Directory Listing
Modified Tue Oct 16 07:01:14 2012 UTC (5 years, 2 months ago) by mmaechler
update (before release)

Revision 2843 - Directory Listing
Modified Mon Oct 15 16:15:05 2012 UTC (5 years, 2 months ago) by mmaechler
using .External(Mmatrix, ...) instead of .Internal(matrix(...))

Revision 2841 - Directory Listing
Modified Fri Oct 5 23:42:48 2012 UTC (5 years, 2 months ago) by mmaechler
man "toeplitz" entry for "old R" versions

Revision 2840 - Directory Listing
Modified Fri Oct 5 22:18:37 2012 UTC (5 years, 2 months ago) by mmaechler
.sparseDiagonal() & solve() tweaks (which were not really necessary, but should slightly speed up

Revision 2837 - Directory Listing
Modified Mon Sep 10 21:46:15 2012 UTC (5 years, 3 months ago) by mmaechler
toeplitz(<sparseVector>);  more use of  paste0 ()

Revision 2835 - Directory Listing
Modified Wed Sep 5 08:59:22 2012 UTC (5 years, 3 months ago) by mmaechler
use attr<- instead of  .Call("R_set_slot", .. PACKAGE="methods")

Revision 2833 - Directory Listing
Modified Mon Sep 3 07:34:21 2012 UTC (5 years, 3 months ago) by mmaechler
allow writeMM("~/...")

Revision 2832 - Directory Listing
Modified Sat Sep 1 22:10:51 2012 UTC (5 years, 3 months ago) by mmaechler
fix "sparseMatrix" / "numeric"  inefficiency; new sparseVector() constructor

Revision 2822 - Directory Listing
Modified Tue Aug 21 20:42:19 2012 UTC (5 years, 3 months ago) by mmaechler
stop() messages made translatable

Revision 2820 - Directory Listing
Modified Mon Aug 20 14:06:23 2012 UTC (5 years, 3 months ago) by mmaechler
make arithmetic (and "Ops") considerably more efficient for large diagonal matrices {thanks to a report by Harold Doran}

Revision 2818 - Directory Listing
Modified Sat Aug 11 23:42:49 2012 UTC (5 years, 4 months ago) by mmaechler
fix "Summary" methods, and nnzero() for "non-uniqueT" matrices

Revision 2814 - Directory Listing
Modified Tue Jul 24 14:02:28 2012 UTC (5 years, 4 months ago) by mmaechler
more Ops are checked and work; new is.finite() and is.infinite() methods (+ checks for them)

Revision 2813 - Directory Listing
Modified Wed Jul 18 16:02:38 2012 UTC (5 years, 4 months ago) by mmaechler
check considerably more "Ops" - and fix, notably for "diagonalMatrix"

Revision 2811 - Directory Listing
Modified Mon Jul 16 15:50:31 2012 UTC (5 years, 5 months ago) by mmaechler
denseMatrix methods for  'diag<-' which preserve (uni)triangularity, symmetry,
etc and are fast via C *_setDiag() functions.
Further, more Ops, e.g. preserving symmetry for  <symmetric> o <diagonal>

Revision 2807 - Directory Listing
Modified Sat Jun 30 17:28:42 2012 UTC (5 years, 5 months ago) by mmaechler
new pack(); more unpack() methods

Revision 2806 - Directory Listing
Modified Sat Jun 30 17:27:38 2012 UTC (5 years, 5 months ago) by mmaechler
Many  <op>  now preserve  symmetric and triangular  matrices

Revision 2800 - Directory Listing
Modified Mon Jun 25 07:32:50 2012 UTC (5 years, 5 months ago) by mmaechler
validity for "corMatrix" {failed when sd was NA; happened in lme4 non-convergence}

Revision 2789 - Directory Listing
Modified Tue Jun 19 16:20:32 2012 UTC (5 years, 5 months ago) by mmaechler
update(<Cholesky>, non-symmetric) restored to previous behavior; more docu and tests

Revision 2788 - Directory Listing
Modified Wed Jun 13 19:05:16 2012 UTC (5 years, 6 months ago) by mmaechler
make use of the increased "smartness" of dgeMatrix_matrix_crossprod()

Revision 2787 - Directory Listing
Modified Wed Jun 13 12:26:13 2012 UTC (5 years, 6 months ago) by mmaechler
ensure dimnames are kept in %*% and [t]crossprod() in all (?) cases.

Revision 2784 - Directory Listing
Modified Fri Jun 8 17:01:25 2012 UTC (5 years, 6 months ago) by mmaechler
update(Cholesky(.), <dgCMatrix>) now warns and coerces;
many small comments and some more docu for Cholesky() and update(); --> TODO

Revision 2783 - Directory Listing
Modified Wed Jun 6 06:53:52 2012 UTC (5 years, 6 months ago) by mmaechler
More docs/examples on chol()/Cholesky()
 new chk.s() "check dots" utility

Revision 2780 - Directory Listing
Modified Wed Apr 18 12:20:47 2012 UTC (5 years, 7 months ago) by mmaechler
new  updown() [interface to CHOLMOD_updown] for up-/down-dating a Cholesky decomposition

Revision 2778 - Directory Listing
Modified Mon Apr 16 19:04:10 2012 UTC (5 years, 8 months ago) by mmaechler
more use of paste0()

Revision 2777 - Directory Listing
Modified Mon Apr 16 19:01:52 2012 UTC (5 years, 8 months ago) by mmaechler
fix the sparseMatrix(*, symmetric=TRUE) bug that Terry found

Revision 2775 - Directory Listing
Modified Fri Mar 16 07:40:54 2012 UTC (5 years, 9 months ago) by mmaechler
version requiring  R >= 2.15.0

Revision 2773 - Directory Listing
Modified Thu Mar 15 14:24:52 2012 UTC (5 years, 9 months ago) by mmaechler
made sparse2int.R()  recursion-free which helps only little for sparse.model.matrix() high-interaction factors

Revision 2770 - Directory Listing
Modified Mon Mar 5 13:41:23 2012 UTC (5 years, 9 months ago) by mmaechler
fix solve(<dtCMatrix>) seg.fault by using Calloc() instead of Alloca() .. hmm

Revision 2769 - Directory Listing
Modified Sat Mar 3 15:30:26 2012 UTC (5 years, 9 months ago) by mmaechler
sparse.model.matrix(*, verbose) {and cleanup of old stuff}

Revision 2767 - Directory Listing
Modified Mon Feb 27 22:20:34 2012 UTC (5 years, 9 months ago) by mmaechler
<sparseMatrix> o <numeric> fixed Florent`s bug

Revision 2765 - Directory Listing
Modified Tue Feb 21 17:30:39 2012 UTC (5 years, 9 months ago) by mmaechler
mini cleanup before release

Revision 2764 - Directory Listing
Modified Fri Feb 17 19:58:29 2012 UTC (5 years, 9 months ago) by mmaechler
fix  -Diagonal(3)

Revision 2744 - Directory Listing
Modified Fri Dec 30 18:51:18 2011 UTC (5 years, 11 months ago) by mmaechler
Matrix_check_class_etc() has been in R-devel for a while now;
NAMESPACE imports for border line situation

Revision 2741 - Directory Listing
Modified Fri Dec 9 10:38:51 2011 UTC (6 years ago) by mmaechler
.bdiag(<all "lMatrix">) now works too

Revision 2740 - Directory Listing
Modified Fri Dec 9 10:37:08 2011 UTC (6 years ago) by mmaechler
use new base::paste0 when it's available

Revision 2738 - Directory Listing
Modified Fri Nov 4 21:37:07 2011 UTC (6 years, 1 month ago) by mmaechler
no longer assignInNamespace when R >= 2.15.0

Revision 2736 - Directory Listing
Modified Sat Oct 22 21:41:13 2011 UTC (6 years, 1 month ago) by mmaechler
add  qr.qt?y(<sparseQR>, <sparseMatrix>) methods for Terry

Revision 2735 - Directory Listing
Modified Sat Oct 22 20:29:27 2011 UTC (6 years, 1 month ago) by mmaechler
rankMatrix(x, "qr..") for sparse -- part 2

Revision 2734 - Directory Listing
Modified Sat Oct 22 20:07:02 2011 UTC (6 years, 1 month ago) by mmaechler
rankMatrix(x, "qr..") for sparse  x

Revision 2733 - Directory Listing
Modified Sat Oct 22 19:54:53 2011 UTC (6 years, 1 month ago) by mmaechler
mention options("Matrix.quiet" = TRUE) for qr.R()

Revision 2725 - Directory Listing
Modified Sat Oct 8 19:48:44 2011 UTC (6 years, 2 months ago) by mmaechler
cbind2() and rbind2() methods for the mix of sparse & dense

Revision 2724 - Directory Listing
Modified Sat Oct 8 13:48:54 2011 UTC (6 years, 2 months ago) by mmaechler
drop pre-R-2.12.0 code

Revision 2713 - Directory Listing
Modified Sat Sep 17 10:17:24 2011 UTC (6 years, 3 months ago) by mmaechler
make Matrix_check_class_etc callable from other packages C code

Revision 2712 - Directory Listing
Modified Sat Sep 17 09:56:13 2011 UTC (6 years, 3 months ago) by mmaechler
solve(<dsC>) -- now use LU if cholmod LDL failed

Revision 2709 - Directory Listing
Modified Thu Sep 15 20:37:56 2011 UTC (6 years, 3 months ago) by mmaechler
chol(<Tsparse>) fix

Revision 2708 - Directory Listing
Modified Thu Sep 15 10:07:32 2011 UTC (6 years, 3 months ago) by mmaechler
bandSparse(*, giveCsparse=TRUE) - option to return Tsparse, ditto for sparseMatrix()

Revision 2695 - Directory Listing
Modified Tue Aug 9 19:43:57 2011 UTC (6 years, 4 months ago) by mmaechler
make sure assignInNamspace is "there"

Revision 2694 - Directory Listing
Modified Tue Aug 9 15:09:14 2011 UTC (6 years, 4 months ago) by mmaechler
rm .onLoad() - never used as shadowed by the one in zzz.R

Revision 2693 - Directory Listing
Modified Tue Aug 9 14:16:28 2011 UTC (6 years, 4 months ago) by mmaechler
do not use GNU-make-isms in Makefile

Revision 2691 - Directory Listing
Modified Mon Aug 8 08:56:24 2011 UTC (6 years, 4 months ago) by mmaechler
replace s/FIXME/"FIXME"/

Revision 2688 - Directory Listing
Modified Sat Aug 6 15:33:33 2011 UTC (6 years, 4 months ago) by mmaechler
 "[<-" : now also replTmat calls into Csparse_subassign for large replacement region

Revision 2686 - Directory Listing
Modified Fri Aug 5 21:09:48 2011 UTC (6 years, 4 months ago) by mmaechler
add head(<sparseVector>, n) and tail(..) and use it, removing two FIXME`s

Revision 2684 - Directory Listing
Modified Fri Aug 5 15:17:26 2011 UTC (6 years, 4 months ago) by mmaechler
<Csparse>[..] <- val   now goes via .Call()

Revision 2681 - Directory Listing
Modified Mon Aug 1 20:43:16 2011 UTC (6 years, 4 months ago) by mmaechler
Csparse_subassign() now also for dtCMatrix

Revision 2680 - Directory Listing
Modified Fri Jul 29 14:34:57 2011 UTC (6 years, 4 months ago) by mmaechler
support 'useRaster' argument for image() methods

Revision 2679 - Directory Listing
Modified Wed Jul 27 17:27:12 2011 UTC (6 years, 4 months ago) by mmaechler
nearPD(*, ensureSymmetry) - allowing a small speedup

Revision 2677 - Directory Listing
Modified Sat Jun 25 19:18:12 2011 UTC (6 years, 5 months ago) by mmaechler
finally a working C level Csparse_subassign() - to solve the memory-explode issue .. *BUT* it`s still too slow, even if I never remove but use drop0(.) in the end ... commit now before South America ... in case I get hit by a truck :-)

Revision 2676 - Directory Listing
Modified Sat Jun 25 19:14:05 2011 UTC (6 years, 5 months ago) by mmaechler
define S3 methods for as.array(), as.matrix() & as.vector()  *instead* of writing into base NS

Revision 2674 - Directory Listing
Modified Fri Jun 10 21:56:20 2011 UTC (6 years, 6 months ago) by mmaechler
fix <non-constant-Diagonal> %*% <dsCMatrix>

Revision 2673 - Directory Listing
Modified Fri May 20 16:19:18 2011 UTC (6 years, 6 months ago) by mmaechler
fix det(Matrix(0,1)) bug \\ misc.

Revision 2671 - Directory Listing
Modified Fri May 20 16:17:58 2011 UTC (6 years, 6 months ago) by mmaechler
sparseMatrix(*, symmetric)

Revision 2661 - Directory Listing
Modified Wed Apr 6 06:55:54 2011 UTC (6 years, 8 months ago) by mmaechler
use standard UFlong (instead of UFlong := int hack); updated CHOLMOD/SparseSuite Jan. -- version 0.9996875-0

Revision 2652 - Directory Listing
Modified Wed Feb 23 14:03:33 2011 UTC (6 years, 9 months ago) by mmaechler
simple solve(Pmatrix, A) methods

Revision 2651 - Directory Listing
Modified Wed Feb 23 14:02:32 2011 UTC (6 years, 9 months ago) by mmaechler
reset "factors" slot in t()

Revision 2650 - Directory Listing
Modified Mon Feb 21 10:57:56 2011 UTC (6 years, 9 months ago) by mmaechler
fix bug in  M[i,j] <- v for cases with *repeated* entries in j

Revision 2648 - Directory Listing
Modified Mon Feb 21 10:57:53 2011 UTC (6 years, 9 months ago) by mmaechler
sparseVector now with *sorted* i-slot

Revision 2644 - Directory Listing
Modified Mon Feb 21 10:57:45 2011 UTC (6 years, 9 months ago) by mmaechler
print/format sparse Matrix: fix align="right" and improve docu

Revision 2636 - Directory Listing
Modified Fri Jan 7 07:42:12 2011 UTC (6 years, 11 months ago) by mmaechler
after 17 months, get rid of API-change warning in determinant(<CHMfactor>)

Revision 2635 - Directory Listing
Modified Tue Jan 4 16:20:50 2011 UTC (6 years, 11 months ago) by mmaechler
nearPD(): better error message for all negative E.V.

Revision 2634 - Directory Listing
Modified Sat Dec 18 16:52:33 2010 UTC (6 years, 11 months ago) by mmaechler
get rid of model.Matrix() {stub to pkg "MatrixModels"}

Revision 2633 - Directory Listing
Modified Sun Dec 12 21:23:17 2010 UTC (7 years ago) by mmaechler
cosmetics from checkUsagePackage()

Revision 2629 - Directory Listing
Modified Sat Dec 11 18:50:49 2010 UTC (7 years ago) by mmaechler
as last rev: crossprod(<ngCMatrix>, <dense>);  etc

Revision 2628 - Directory Listing
Modified Sat Dec 11 16:56:51 2010 UTC (7 years ago) by mmaechler
fix <ngCMatrix> %*% <dense> -- providing fast C-based coercions

Revision 2627 - Directory Listing
Modified Mon Dec 6 14:33:15 2010 UTC (7 years ago) by mmaechler
Matrix(): adapted to new .Internal(matrix)

Revision 2620 - Directory Listing
Modified Sat Oct 9 07:27:05 2010 UTC (7 years, 2 months ago) by mmaechler
+ graph:: 

Revision 2618 - Directory Listing
Modified Sat Sep 11 20:49:41 2010 UTC (7 years, 3 months ago) by mmaechler
misc. (cosmetic) - preparing release

Revision 2616 - Directory Listing
Modified Tue Aug 24 16:15:00 2010 UTC (7 years, 3 months ago) by mmaechler
sparse.model.matrix(): drop.unused.levels = *FALSE* / printSpMatrix() using FormatSpMatrix() and that is modularized

Revision 2613 - Directory Listing
Modified Thu Aug 12 20:51:08 2010 UTC (7 years, 4 months ago) by mmaechler
(fix space in "..." warnings)

Revision 2612 - Directory Listing
Modified Wed Aug 11 20:33:46 2010 UTC (7 years, 4 months ago) by mmaechler
Schur(<dgCMatrix>) no works

Revision 2611 - Directory Listing
Modified Tue Aug 10 20:02:02 2010 UTC (7 years, 4 months ago) by mmaechler
eliminate pre-R-2.10.0 clauses

Revision 2608 - Directory Listing
Modified Tue Aug 10 08:23:48 2010 UTC (7 years, 4 months ago) by mmaechler
need to drop "@factors" when matrix is changed

Revision 2594 - Directory Listing
Modified Wed Aug 4 12:58:14 2010 UTC (7 years, 4 months ago) by dmbates
Fix name resolution problem exposed by example from Florent Duyme.

Revision 2592 - Directory Listing
Modified Sun Aug 1 19:51:14 2010 UTC (7 years, 4 months ago) by mmaechler
efficient x[ -i ] for sparse vectors; "Enhances" MatrixModels

Revision 2590 - Directory Listing
Modified Wed Jul 28 20:21:55 2010 UTC (7 years, 4 months ago) by mmaechler
add a model.Matrix() "proxy" - for back-compatibility

Revision 2588 - Directory Listing
Modified Mon Jul 26 10:06:18 2010 UTC (7 years, 4 months ago) by mmaechler
new package "MatrixModels" split off Matrix - for modelMatrix(), prediction & response Modules, etc

Revision 2586 - Directory Listing
Modified Sun Jul 25 02:32:06 2010 UTC (7 years, 4 months ago) by mmaechler
Copied from: pkg/R revision 2580
move Matrix/ directory "down"

Revision 2580 - Directory Listing
Modified Fri Jul 23 13:15:41 2010 UTC (7 years, 4 months ago) by mmaechler
Original Path: pkg/R
allow "useInv" for rcond(<sparseMatrix>)

Revision 2572 - Directory Listing
Modified Sat Jul 17 16:54:41 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
formula(<Model); other minor cleanup

Revision 2571 - Directory Listing
Modified Fri Jul 16 17:00:54 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
do.defaults(.., nonMatched.action = c("stop" ...))

Revision 2570 - Directory Listing
Modified Fri Jul 16 15:56:52 2010 UTC (7 years, 5 months ago) by dmbates
Original Path: pkg/R
Added a do.defaults function

Revision 2569 - Directory Listing
Modified Fri Jul 16 15:04:45 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
IRLS() tweaks; update( <glm4> ); "Model" mother class

Revision 2568 - Directory Listing
Modified Thu Jul 15 15:26:03 2010 UTC (7 years, 5 months ago) by dmbates
Original Path: pkg/R
Simplify IRLS logic, at the cost of somewhat less accurate results

Revision 2566 - Directory Listing
Modified Tue Jul 13 14:22:26 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
IRLS(): more convergence crit. checking.  s/glm1/glm4/

Revision 2565 - Directory Listing
Modified Mon Jul 12 16:32:48 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
"glpModel": docu etc; "CholeskyFactorization"

Revision 2563 - Directory Listing
Modified Fri Jul 9 19:45:15 2010 UTC (7 years, 5 months ago) by dmbates
Original Path: pkg/R
Added a single fixed-point initial evaluation for glm1

Revision 2561 - Directory Listing
Modified Fri Jul 9 13:54:03 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
fix \linkS4class{} typos; add trivial comments, export "lpMod"

Revision 2560 - Directory Listing
Modified Fri Jul 9 13:20:54 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
which(.) now uses arrayInd(.) - as our "FIXME" said

Revision 2559 - Directory Listing
Modified Thu Jul 8 21:59:42 2010 UTC (7 years, 5 months ago) by dmbates
Original Path: pkg/R
glm1 with dense and sparse X

Revision 2558 - Directory Listing
Modified Thu Jul 8 18:12:22 2010 UTC (7 years, 5 months ago) by dmbates
Original Path: pkg/R
Add IRLS function and associated methods; these still have bugs apparently

Revision 2557 - Directory Listing
Modified Wed Jul 7 20:43:10 2010 UTC (7 years, 5 months ago) by dmbates
Original Path: pkg/R
Initial version of respModule and predModule; glm1 (hidden) function

Revision 2556 - Directory Listing
Modified Mon Jul 5 16:58:27 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
bug fixes for "!=", thanks to Ruth & Brian Ripley

Revision 2555 - Directory Listing
Modified Sat Jul 3 11:24:13 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
nearPD(., doSym=FALSE) - changed default

Revision 2554 - Directory Listing
Modified Fri Jul 2 23:10:26 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
nearPD() etc; see ChangeLog

Revision 2553 - Directory Listing
Modified Sat Jun 26 06:50:03 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
fix mean(<sparse with NA>), thanks to Ruth Ripley

Revision 2551 - Directory Listing
Modified Sat Jun 19 20:45:45 2010 UTC (7 years, 5 months ago) by mmaechler
Original Path: pkg/R
some more coercions; e.g. sparseVector -> sparseMatrix

Revision 2549 - Directory Listing
Modified Tue Jun 8 07:20:55 2010 UTC (7 years, 6 months ago) by mmaechler
Original Path: pkg/R
M [ <lMatrix> ]  <- value  now works

Revision 2548 - Directory Listing
Modified Fri Jun 4 15:55:22 2010 UTC (7 years, 6 months ago) by mmaechler
Original Path: pkg/R
sparseMatrix(*, dimnames=.) should work (again!)

Revision 2547 - Directory Listing
Modified Thu Jun 3 16:28:50 2010 UTC (7 years, 6 months ago) by mmaechler
Original Path: pkg/R
model.Matrix() tweak

Revision 2544 - Directory Listing
Modified Wed Jun 2 09:29:01 2010 UTC (7 years, 6 months ago) by mmaechler
Original Path: pkg/R
new model.Matrix(), sparse.model.matrix() return "modelMatrix" class

Revision 2539 - Directory Listing
Modified Sat May 15 19:50:45 2010 UTC (7 years, 7 months ago) by mmaechler
Original Path: pkg/R
fix <sparseMatrix>[] <- value

Revision 2538 - Directory Listing
Modified Sat May 8 15:25:20 2010 UTC (7 years, 7 months ago) by mmaechler
Original Path: pkg/R
sparse.model.matrix( ~ .. + I(...))

Revision 2537 - Directory Listing
Modified Sat May 8 15:24:53 2010 UTC (7 years, 7 months ago) by mmaechler
Original Path: pkg/R
UTF-8

Revision 2534 - Directory Listing
Modified Sat May 1 21:39:29 2010 UTC (7 years, 7 months ago) by mmaechler
Original Path: pkg/R
update condest() help page + cosmetic

Revision 2532 - Directory Listing
Modified Sat May 1 20:49:55 2010 UTC (7 years, 7 months ago) by mmaechler
Original Path: pkg/R
new condest(), onenormest(); a bit more "pMatrix" methods

Revision 2531 - Directory Listing
Modified Wed Apr 28 15:29:56 2010 UTC (7 years, 7 months ago) by mmaechler
Original Path: pkg/R
fac2sparse(): no longer use "Class" [= 1st arg of new()] explicitly

Revision 2529 - Directory Listing
Modified Wed Mar 31 14:41:33 2010 UTC (7 years, 8 months ago) by mmaechler
Original Path: pkg/R
lm.fit.sparse(x,y, w, *) (+ weights!) etc

Revision 2527 - Directory Listing
Modified Tue Mar 30 17:22:44 2010 UTC (7 years, 8 months ago) by mmaechler
Original Path: pkg/R
enable sparse.model.matrix( ~ 1)

Revision 2526 - Directory Listing
Modified Sat Mar 27 11:08:43 2010 UTC (7 years, 8 months ago) by mmaechler
Original Path: pkg/R
which() methods + checks; small things

Revision 2525 - Directory Listing
Modified Wed Mar 24 11:15:01 2010 UTC (7 years, 8 months ago) by mmaechler
Original Path: pkg/R
M[ij] indexing now works with non-integer numeric ij and checks better; other changes, see ChangeLog

Revision 2523 - Directory Listing
Modified Wed Mar 3 07:42:37 2010 UTC (7 years, 9 months ago) by mmaechler
Original Path: pkg/R
fixing two []-buglets; rep2abI()

Revision 2521 - Directory Listing
Modified Fri Feb 12 15:32:03 2010 UTC (7 years, 10 months ago) by mmaechler
Original Path: pkg/R
solve(<dtrMatrix>, *) for <Cholesky> in lme4

Revision 2520 - Directory Listing
Modified Fri Feb 12 10:51:37 2010 UTC (7 years, 10 months ago) by mmaechler
Original Path: pkg/R
det(): export regularly (with "masking warning") instead of base namespace hack

Revision 2519 - Directory Listing
Modified Fri Feb 5 17:20:14 2010 UTC (7 years, 10 months ago) by mmaechler
Original Path: pkg/R
ore <sparse>[.,.] fixes, using cholmod_submatrix() now

Revision 2518 - Directory Listing
Modified Thu Feb 4 17:09:33 2010 UTC (7 years, 10 months ago) by mmaechler
Original Path: pkg/R
fix <sparse>[0,0] -> version 0.999375-36

Revision 2517 - Directory Listing
Modified Wed Feb 3 11:33:18 2010 UTC (7 years, 10 months ago) by mmaechler
Original Path: pkg/R
Fix <n.TMatrix>[ <ij-matrix> ] <- FALSE

Revision 2514 - Directory Listing
Modified Sat Jan 23 22:18:53 2010 UTC (7 years, 10 months ago) by mmaechler
Original Path: pkg/R
nnzero() is generic; det[erminant]() cosmetic

Revision 2512 - Directory Listing
Modified Mon Jan 18 17:05:35 2010 UTC (7 years, 10 months ago) by mmaechler
Original Path: pkg/R
Matrix`s own contr.poly() had an infelicitous default

Revision 2508 - Directory Listing
Modified Thu Dec 24 09:47:57 2009 UTC (7 years, 11 months ago) by mmaechler
Original Path: pkg/R
Use Matrix-multiplication for sparse "[" for now

Revision 2507 - Directory Listing
Modified Tue Dec 22 21:11:49 2009 UTC (7 years, 11 months ago) by mmaechler
Original Path: pkg/R
many "abIndex" methods and tests ++ see ChangeLog

Revision 2506 - Directory Listing
Modified Fri Dec 11 12:54:28 2009 UTC (8 years ago) by mmaechler
Original Path: pkg/R
fix *sTMatrix -> sparseVector; etc

Revision 2505 - Directory Listing
Modified Wed Dec 9 17:33:23 2009 UTC (8 years ago) by mmaechler
Original Path: pkg/R
<sparseMatrix> o <numeric> remains sparse in more cases

Revision 2503 - Directory Listing
Modified Sun Dec 6 19:40:51 2009 UTC (8 years ago) by mmaechler
Original Path: pkg/R
implement missing sparseVector "Ops"

Revision 2500 - Directory Listing
Modified Fri Nov 20 13:22:17 2009 UTC (8 years ago) by mmaechler
Original Path: pkg/R
<sparseVector>  method improvements

Revision 2497 - Directory Listing
Modified Sat Nov 14 21:36:25 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/R
put "abIndex" class in, even if very unfinished;
otherwise, too many changed files get in my way

Revision 2496 - Directory Listing
Modified Sat Nov 14 17:24:42 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/R
tests/ update

Revision 2493 - Directory Listing
Modified Mon Nov 2 11:55:05 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/R
symmetric sparse o diagonal;  diag o triangular; etc

Revision 2492 - Directory Listing
Modified Mon Nov 2 11:54:23 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/R
improve "[" a bit for large nnz - using less memory

Revision 2490 - Directory Listing
Modified Sat Oct 24 20:40:09 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/R
checkMatrix() does crossprod() now; also see ChangeLog

Revision 2489 - Directory Listing
Modified Sat Oct 24 20:33:05 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/R
move remaining "%*%" methods to products.R

Revision 2488 - Directory Listing
Modified Sat Oct 24 20:29:18 2009 UTC (8 years, 1 month ago) by mmaechler
Original Path: pkg/R
dgeMatrix_LU(*, errr_Sing)

Revision 2485 - Directory Listing
Modified Tue Oct 6 09:32:05 2009 UTC (8 years, 2 months ago) by mmaechler
Original Path: pkg/R
better adapt chol2inv definition to newer R`s implicit generic

Revision 2483 - Directory Listing
Modified Thu Oct 1 21:21:20 2009 UTC (8 years, 2 months ago) by dmbates
Original Path: pkg/R
New mechanism for saving and restoring the cholmod_common struct

Revision 2482 - Directory Listing
Modified Wed Sep 30 09:37:15 2009 UTC (8 years, 2 months ago) by mmaechler
Original Path: pkg/R
fix infinite recursion for image(), solve() with ddiMatrix

Revision 2481 - Directory Listing
Modified Tue Sep 29 16:43:21 2009 UTC (8 years, 2 months ago) by mmaechler
Original Path: pkg/R
generic rcond, only if not-so-new versions of R

Revision 2480 - Directory Listing
Modified Sat Sep 26 15:45:44 2009 UTC (8 years, 2 months ago) by dmbates
Original Path: pkg/R
Create and populate a .chm_common environment

Revision 2476 - Directory Listing
Modified Wed Sep 23 12:09:07 2009 UTC (8 years, 2 months ago) by mmaechler
Original Path: pkg/R
more "Ops" definitions and systematically check them

Revision 2473 - Directory Listing
Modified Mon Sep 21 08:34:14 2009 UTC (8 years, 2 months ago) by mmaechler
Original Path: pkg/R
some cleanup; notably the exported M_R_cholmod_error()

Revision 2472 - Directory Listing
Modified Sat Sep 19 06:10:48 2009 UTC (8 years, 2 months ago) by mmaechler
Original Path: pkg/R
solve(<CHMfactor>); more chol2inv(); more methods against "disambiguity" notes, notably "[" ones, including a buglet fix

Revision 2468 - Directory Listing
Modified Wed Sep 16 14:41:39 2009 UTC (8 years, 3 months ago) by dmbates
Original Path: pkg/R
Add chol2inv method

Revision 2465 - Directory Listing
Modified Fri Sep 11 22:49:33 2009 UTC (8 years, 3 months ago) by mmaechler
Original Path: pkg/R
sparseVector Ops; printing "non-structural FALSE" in logical sparseMatrix; more use of paste0()

Revision 2464 - Directory Listing
Modified Fri Sep 11 17:00:12 2009 UTC (8 years, 3 months ago) by mmaechler
Original Path: pkg/R
cosmetic (shuffle)

Revision 2463 - Directory Listing
Modified Wed Sep 2 12:45:57 2009 UTC (8 years, 3 months ago) by mmaechler
Original Path: pkg/R
determinant(<CHMfactor>) now does return  det( "L" )

Revision 2458 - Directory Listing
Modified Fri Aug 28 22:19:48 2009 UTC (8 years, 3 months ago) by dmbates
Original Path: pkg/R
Fix diag by unit triangular operations

Revision 2454 - Directory Listing
Modified Fri Aug 28 14:36:21 2009 UTC (8 years, 3 months ago) by mmaechler
Original Path: pkg/R
{Aug.21:} improve sparse-awareness of `contrasts<-`

Revision 2447 - Directory Listing
Modified Tue Jul 28 18:58:44 2009 UTC (8 years, 4 months ago) by mmaechler
Original Path: pkg/R
no singularity warning during determinant()

Revision 2446 - Directory Listing
Modified Tue Jul 28 18:58:03 2009 UTC (8 years, 4 months ago) by mmaechler
Original Path: pkg/R
quiet codoc checking for R-devel

Revision 2445 - Directory Listing
Modified Mon Jul 27 13:38:31 2009 UTC (8 years, 4 months ago) by mmaechler
Original Path: pkg/R
sparse.model.matrix() rewrite and tests

Revision 2442 - Directory Listing
Modified Mon Jul 20 20:58:57 2009 UTC (8 years, 4 months ago) by mmaechler
Original Path: pkg/R
fix seg.fault after error in Cholesky(*, perm=FALSE)

Revision 2440 - Directory Listing
Modified Mon Jul 20 09:21:22 2009 UTC (8 years, 4 months ago) by mmaechler
Original Path: pkg/R
rcond(<pattern matrix>)

Revision 2439 - Directory Listing
Modified Sat Jul 18 16:03:36 2009 UTC (8 years, 4 months ago) by mmaechler
Original Path: pkg/R
Cholesky(*, super = NA): fix "factors" caching

Revision 2438 - Directory Listing
Modified Fri Jul 17 20:01:12 2009 UTC (8 years, 5 months ago) by mmaechler
Original Path: pkg/R
first cut on hint about future determinant(<Choleski>) change

Revision 2434 - Directory Listing
Modified Tue Jul 14 04:35:50 2009 UTC (8 years, 5 months ago) by mmaechler
Original Path: pkg/R
diff(sval) <= 0 (can well be 0)

Revision 2430 - Directory Listing
Modified Tue Jul 14 03:21:39 2009 UTC (8 years, 5 months ago) by mmaechler
Original Path: pkg/R
fix mini-thinko

Revision 2429 - Directory Listing
Modified Tue Jul 14 02:21:17 2009 UTC (8 years, 5 months ago) by mmaechler
Original Path: pkg/R
sparse.model.matrix() improvements

Revision 2422 - Directory Listing
Modified Sat Jul 11 20:36:10 2009 UTC (8 years, 5 months ago) by mmaechler
Original Path: pkg/R
export isLDL, test it; small fixes WRT contr.*(., sparse) 

Revision 2421 - Directory Listing
Modified Sat Jul 11 20:12:16 2009 UTC (8 years, 5 months ago) by mmaechler
Original Path: pkg/R
rationalize show()/print() and printSpMatrix2()

Revision 2418 - Directory Listing
Modified Fri Jul 10 20:26:43 2009 UTC (8 years, 5 months ago) by dmbates
Original Path: pkg/R
Updates to the destructive update of sparse Cholesky

Revision 2417 - Directory Listing
Modified Fri Jul 10 16:17:28 2009 UTC (8 years, 5 months ago) by dmbates
Original Path: pkg/R
Special cases of multiplication of sparse and diagonal matrices

Revision 2416 - Directory Listing
Modified Thu Jul 9 22:21:40 2009 UTC (8 years, 5 months ago) by mmaechler
Original Path: pkg/R
do not test for model.frame, just data.frame

Revision 2414 - Directory Listing
Modified Wed Jul 8 21:50:41 2009 UTC (8 years, 5 months ago) by mmaechler
Original Path: pkg/R
sparse.model.matrix()  +- ok now

Revision 2411 - Directory Listing
Modified Thu Jun 25 12:39:21 2009 UTC (8 years, 5 months ago) by mmaechler
Original Path: pkg/R
aesthetics: do not use "1L" as part of  n:m

Revision 2402 - Directory Listing
Modified Wed Jun 10 17:22:59 2009 UTC (8 years, 6 months ago) by dmbates
Original Path: pkg/R
R-level implementation of solve("dgCMatrix", "missing")

Revision 2394 - Directory Listing
Modified Sat Jun 6 21:45:37 2009 UTC (8 years, 6 months ago) by mmaechler
Original Path: pkg/R
kronecker( <numeric> )

Revision 2387 - Directory Listing
Modified Fri May 29 12:50:34 2009 UTC (8 years, 6 months ago) by mmaechler
Original Path: pkg/R
fix up internationalization of (error/warning) messages

Revision 2384 - Directory Listing
Modified Mon May 25 14:44:03 2009 UTC (8 years, 6 months ago) by mmaechler
Original Path: pkg/R
rm superfluous gettextf()

Revision 2381 - Directory Listing
Modified Mon May 25 09:56:10 2009 UTC (8 years, 6 months ago) by mmaechler
Original Path: pkg/R
related to %*%, [t]crossprod() extensions, i.e. r2380

Revision 2380 - Directory Listing
Modified Mon May 25 09:45:37 2009 UTC (8 years, 6 months ago) by mmaechler
Original Path: pkg/R
move %*%, [t]crossprod() methods to own file products.R; + "sparseVector" methods

Revision 2378 - Directory Listing
Modified Sat May 23 18:06:03 2009 UTC (8 years, 6 months ago) by mmaechler
Original Path: pkg/R
remove old out-commented code

Revision 2375 - Directory Listing
Modified Mon May 18 14:43:08 2009 UTC (8 years, 7 months ago) by mmaechler
Original Path: pkg/R
dim(<symmetric/diagonal>) <- v; etc

Revision 2374 - Directory Listing
Modified Mon May 18 14:40:09 2009 UTC (8 years, 7 months ago) by mmaechler
Original Path: pkg/R
new rankMatrix()

Revision 2369 - Directory Listing
Modified Wed May 6 10:01:37 2009 UTC (8 years, 7 months ago) by mmaechler
Original Path: pkg/R
nice error message on readMM(<malformed>)

Revision 2367 - Directory Listing
Modified Wed Apr 29 10:13:42 2009 UTC (8 years, 7 months ago) by mmaechler
Original Path: pkg/R
comment cosmetic

Revision 2364 - Directory Listing
Modified Sat Apr 18 23:32:30 2009 UTC (8 years, 7 months ago) by mmaechler
Original Path: pkg/R
"fix" for the problem that .M.classEnv is not found when Matrix is only loaded but not attached

Revision 2363 - Directory Listing
Modified Thu Apr 9 20:45:32 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/R
as(., "vector"); M[i, drop=<LOGI>] vector-indexing; fix (& check) rare problem in <TsparseTriangular[i,]; some cosmetics

Revision 2361 - Directory Listing
Modified Tue Apr 7 09:20:19 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/R
lu() "part 2"; sparseVector

Revision 2357 - Directory Listing
Modified Mon Apr 6 15:53:51 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/R
rid code of pre-2.9.0 if()s; also use 2.9.0-based tests/*.Rout.save where appropriate

Revision 2354 - Directory Listing
Modified Mon Mar 30 15:31:23 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/R
more robust MatrixClass(); in C, use methods:::classEnv() via wrapper

Revision 2353 - Directory Listing
Modified Wed Mar 25 13:39:29 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/R
use MatrixClass() ... forgot another one

Revision 2351 - Directory Listing
Modified Wed Mar 25 10:41:05 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/R
use C-level Matrix_check_class_and_super(); adapt R code (and checks!) that work with class names similarly, using new MatrixClass()

Revision 2350 - Directory Listing
Modified Wed Mar 25 10:28:34 2009 UTC (8 years, 8 months ago) by mmaechler
Original Path: pkg/R
minor cleanups

Revision 2346 - Directory Listing
Modified Thu Mar 12 10:40:52 2009 UTC (8 years, 9 months ago) by mmaechler
Original Path: pkg/R
band(x, .,.) fixes, notably for dense x

Revision 2345 - Directory Listing
Modified Wed Mar 11 18:41:28 2009 UTC (8 years, 9 months ago) by mmaechler
Original Path: pkg/R
address remaining warnings in tests/Simple.R, see ChangeLog

Revision 2341 - Directory Listing
Modified Mon Mar 2 17:53:13 2009 UTC (8 years, 9 months ago) by mmaechler
Original Path: pkg/R
misc.cleanup; mostly related to "all NA sparse mat."; see ChangeLog

Revision 2340 - Directory Listing
Modified Mon Mar 2 17:52:35 2009 UTC (8 years, 9 months ago) by mmaechler
Original Path: pkg/R
new function bandSparse()

Revision 2335 - Directory Listing
Modified Fri Feb 13 14:09:22 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/R
<ngCMatrix>[, j] <- val  -- fix

Revision 2333 - Directory Listing
Modified Fri Jan 30 23:09:44 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/R
ready to release *-20; do not call spqr() on Windows; minor coercion changes, notably for "pMatrix", see ChangeLog

Revision 2331 - Directory Listing
Modified Thu Jan 29 15:13:15 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/R
more diagMatrix arithmetic ops for new method-dispatch

Revision 2330 - Directory Listing
Modified Thu Jan 29 09:35:33 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/R
Ops.x.x fix fix

Revision 2329 - Directory Listing
Modified Thu Jan 29 09:12:44 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/R
Ops.x.x fix (of yesterday) for new "inherited-method-dispatch"

Revision 2327 - Directory Listing
Modified Wed Jan 28 08:46:07 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/R
miscellaneous; some relating to SPQR

Revision 2326 - Directory Listing
Modified Wed Jan 28 08:43:40 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/R
spqr()  |-> "SPQR" class

Revision 2323 - Directory Listing
Modified Wed Jan 21 20:50:12 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/R
first step at dealing with NA in indices

Revision 2322 - Directory Listing
Modified Wed Jan 21 20:42:42 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/R
2nd steps towards an R - SPQR interface

Revision 2318 - Directory Listing
Modified Sat Jan 17 20:11:18 2009 UTC (8 years, 10 months ago) by mmaechler
Original Path: pkg/R
sparseMatrix() tweaks [index1 = TRUE]

Revision 2313 - Directory Listing
Modified Mon Jan 12 20:35:38 2009 UTC (8 years, 11 months ago) by dmbates
Original Path: pkg/R
Use intermediate triplet rep in sparseMatrix

Revision 2312 - Directory Listing
Modified Sat Jan 10 14:01:26 2009 UTC (8 years, 11 months ago) by mmaechler
Original Path: pkg/R
new sparseMatrix(): construct *sorted* Csparse from un-sorted input, using modify-in-place under the hood

Revision 2279 - Directory Listing
Modified Fri Oct 3 09:15:54 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/R
prevent seg.fault from invalid object

Revision 2271 - Directory Listing
Modified Tue Sep 23 16:39:50 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/R
fix one more (minor) TODO

Revision 2268 - Directory Listing
Modified Mon Sep 22 15:17:12 2008 UTC (9 years, 2 months ago) by mmaechler
Original Path: pkg/R
less TODOs; notably coercion -> [dln]Matrix; diagonal arithmetic

Revision 2267 - Directory Listing
Modified Wed Sep 17 11:55:57 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/R
fix  <dsCMatrix>[ <ij-matrix> ] <- v

Revision 2256 - Directory Listing
Modified Fri Sep 5 16:23:39 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/R
drop0(., tol); <Matrix,ANY> changes from JMC; diagU2N()

Revision 2255 - Directory Listing
Modified Sat Aug 30 07:20:33 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/R
all.equal()  TRUE only if e.g. classes match

Revision 2252 - Directory Listing
Modified Thu Aug 28 13:07:07 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/R
fix my own error in fac2sparse()

Revision 2250 - Directory Listing
Modified Thu Aug 28 11:54:53 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/R
all.equal() and Ops for nsparse(Matrix|Vector)

Revision 2249 - Directory Listing
Modified Wed Aug 27 20:35:34 2008 UTC (9 years, 3 months ago) by dmbates
Original Path: pkg/R
New version of fac2sparse that handles missing values

Revision 2247 - Directory Listing
Modified Mon Aug 25 16:56:00 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/R
lu(<sparse singular>) gives an error again

Revision 2246 - Directory Listing
Modified Mon Aug 25 16:55:29 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/R
cosmetic

Revision 2245 - Directory Listing
Modified Mon Aug 25 15:06:12 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/R
all.equal() methods; expand(<sparseLU>)

Revision 2243 - Directory Listing
Modified Sat Aug 23 17:59:26 2008 UTC (9 years, 3 months ago) by dmbates
Original Path: pkg/R
Added expand method and documentation for CHMfactor class

Revision 2242 - Directory Listing
Modified Thu Aug 21 20:51:40 2008 UTC (9 years, 3 months ago) by mmaechler
Original Path: pkg/R
misc from last week; notably "large" sparseVector`s

Revision 2241 - Directory Listing
Modified Thu Aug 21 18:57:36 2008 UTC (9 years, 3 months ago) by dmbates
Original Path: pkg/R
Added trivial coercion method for CHMfactor -> pMatrix

Revision 2239 - Directory Listing
Modified Mon Jul 28 19:26:40 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/R
make diagonalMatrix extend sparseM* instead dense*; dgCMatrix_qrsol(.,., order) {in hidden lm.fit.sparse()}

Revision 2237 - Directory Listing
Modified Fri Jul 25 06:55:42 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/R
two more solve() cases; tweaks related to diagMatrix

Revision 2236 - Directory Listing
Modified Wed Jul 23 16:48:14 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/R
more validObject() checks, and fixes for "over-allocated" i- and x-slots

Revision 2226 - Directory Listing
Modified Mon Jul 21 17:15:17 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/R
.trDiagonal() for Csparse diag="N" diagonal

Revision 2225 - Directory Listing
Modified Sat Jul 19 09:44:48 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/R
fix longstanding dimNamesCheck() buglet

Revision 2223 - Directory Listing
Modified Fri Jul 18 23:04:48 2008 UTC (9 years, 4 months ago) by mmaechler
Original Path: pkg/R
build sparse_diagU2N() into functions underlying AS_CHM_*()

Revision 2221 - Directory Listing
Modified Fri Jul 18 07:54:07 2008 UTC (9 years, 5 months ago) by mmaechler
Original Path: pkg/R
 "fix" some solve() methods so they won`t use .local()

Revision 2217 - Directory Listing
Modified Thu Jul 17 20:20:26 2008 UTC (9 years, 5 months ago) by dmbates
Original Path: pkg/R
Replace dtCMatrix_solve by more general dtCMatrix_sparse_solve and add new solve method

Revision 2214 - Directory Listing
Modified Thu Jul 17 17:25:35 2008 UTC (9 years, 5 months ago) by mmaechler
Original Path: pkg/R
cosmetic

Revision 2212 - Directory Listing
Modified Wed Jul 16 22:22:12 2008 UTC (9 years, 5 months ago) by dmbates
Original Path: pkg/R
fac2sparse gets a drop.unused.levels argument with default TRUE

Revision 2210 - Directory Listing
Modified Wed Jul 16 22:20:22 2008 UTC (9 years, 5 months ago) by dmbates
Original Path: pkg/R
Remove vestigial methods based on the parent array; new solve method for signature(a = "dtCMatrix", b = "sparseMatrix")

Revision 2209 - Directory Listing
Modified Mon Jul 14 19:39:39 2008 UTC (9 years, 5 months ago) by mmaechler
Original Path: pkg/R
bdiag() improvements of last week

Revision 2207 - Directory Listing
Modified Mon Jul 7 22:34:52 2008 UTC (9 years, 5 months ago) by mmaechler
Original Path: pkg/R
M[...] <- "sparseVector" etc, see ChangeLog

Revision 2206 - Directory Listing
Modified Wed Jun 25 14:57:02 2008 UTC (9 years, 5 months ago) by mmaechler
Original Path: pkg/R
bdiag(): use Doug`s better algorithm, fix "bugs"

Revision 2203 - Directory Listing
Modified Sat Jun 14 20:09:17 2008 UTC (9 years, 6 months ago) by mmaechler
Original Path: pkg/R
C based encodeInd() -> faster indexing; any()/all() for nsparse; printSpMatrix2(); show(<diag>)

Revision 2202 - Directory Listing
Modified Mon Jun 9 21:36:21 2008 UTC (9 years, 6 months ago) by mmaechler
Original Path: pkg/R
copyClass(., check) and fast  dgC -> dtC

Revision 2199 - Directory Listing
Modified Mon Jun 2 16:09:12 2008 UTC (9 years, 6 months ago) by mmaechler
Original Path: pkg/R
changes related to 2197; also one small step at reducing the ambiguity warnings

Revision 2197 - Directory Listing
Modified Mon Jun 2 14:34:42 2008 UTC (9 years, 6 months ago) by mmaechler
Original Path: pkg/R
fix diagMatrix-related thinkos

Revision 2196 - Directory Listing
Modified Fri May 30 21:49:50 2008 UTC (9 years, 6 months ago) by mmaechler
Original Path: pkg/R
Ops methods for <diag> o <dMatrix>

Revision 2193 - Directory Listing
Modified Mon May 5 06:56:21 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
less TODO; more "Done"

Revision 2192 - Directory Listing
Modified Thu May 1 08:21:47 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
fix  D[cbind(i,i)] <- v  for unit-diagonal D

Revision 2190 - Directory Listing
Modified Mon Apr 28 16:24:15 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
cholMat(); update dpo coercion tests

Revision 2189 - Directory Listing
Modified Mon Apr 28 15:09:58 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
dpo <-> dpp coercion withOUT check for pos.def

Revision 2187 - Directory Listing
Modified Mon Apr 28 13:41:53 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
disable setIs(..) now we have setAs(..) instead

Revision 2186 - Directory Listing
Modified Mon Apr 28 12:37:01 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
checkMatrix() now checks the [dl]sparseMatrix -> nMatrix coercion

Revision 2185 - Directory Listing
Modified Sat Apr 26 20:33:16 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
more <Ops> methods, notably for lMatrix & nMatrix

Revision 2184 - Directory Listing
Modified Sat Apr 26 20:32:39 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
define image()-methods on higher level [ln]sparseMatrix

Revision 2183 - Directory Listing
Modified Thu Apr 24 10:58:51 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
slight change in class-definition of [d]diMatrix; better pos.definite checks for dpo* and dpp*

Revision 2182 - Directory Listing
Modified Thu Apr 24 10:57:08 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
expm() methods for diagonal/triangular/symmetric

Revision 2180 - Directory Listing
Modified Thu Apr 24 07:38:52 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
typo

Revision 2179 - Directory Listing
Modified Thu Apr 24 06:33:03 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
dsy -> dpo: use setAs(), no longer setIs()

Revision 2175 - Directory Listing
Modified Wed Apr 23 11:23:50 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
more determinant(); MANY consistency cleanups, found by checkMatrix(); .. (see ChangeLog)

Revision 2173 - Directory Listing
Modified Wed Apr 23 11:20:58 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
get rid of pre-2.6.0 part; fix !<dtrMatrix>

Revision 2172 - Directory Listing
Modified Wed Apr 23 11:20:38 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
get rid of pre-2.6.0 part

Revision 2170 - Directory Listing
Modified Mon Apr 21 08:20:08 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
validity for "ltT" & "lsT": use more string tTvalidate

Revision 2169 - Directory Listing
Modified Mon Apr 21 06:25:04 2008 UTC (9 years, 7 months ago) by mmaechler
Original Path: pkg/R
image() with better lwd default ... {and not depending on 2.7.0  dev.size()}

Revision 2168 - Directory Listing
Modified Mon Apr 14 10:41:14 2008 UTC (9 years, 8 months ago) by mmaechler
Original Path: pkg/R
new image() method: do *not* use abs(.) by default, but colors

Revision 2165 - Directory Listing
Modified Sat Mar 29 21:40:18 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/R
drop "double"

Revision 2164 - Directory Listing
Modified Sat Mar 29 14:46:11 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/R
check base::rcond for now

Revision 2161 - Directory Listing
Modified Sat Mar 29 14:08:25 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/R
make work with 2.7.0 version that do not have rcond

Revision 2159 - Directory Listing
Modified Sat Mar 29 08:09:05 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/R
prepare release 0.999375-9

Revision 2158 - Directory Listing
Modified Fri Mar 28 17:07:54 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/R
rcond(., norm) instead of (., type)

Revision 2157 - Directory Listing
Modified Tue Mar 25 15:00:01 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/R
BunchKaufman(); fix <ddi> o <numeric> bug; Version++

Revision 2154 - Directory Listing
Modified Sat Mar 22 21:23:12 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/R
no longer use "non-standard" chol() and qr() generic

Revision 2151 - Directory Listing
Modified Thu Mar 20 23:31:22 2008 UTC (9 years, 8 months ago) by maechler
Original Path: pkg/R
several cosmetics

Revision 2147 - Directory Listing
Modified Wed Mar 19 15:34:36 2008 UTC (9 years, 8 months ago) by bates
Original Path: pkg/R
Hidden function ldetL2up to evaluate log-determinant of updated Cholesky factor for a vector of multiples of the identity

Revision 2145 - Directory Listing
Modified Wed Mar 19 14:00:47 2008 UTC (9 years, 8 months ago) by bates
Original Path: pkg/R
Add Imult argument to Cholesky

Revision 2144 - Directory Listing
Modified Tue Mar 18 23:08:12 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
.symDiagonal(), is.na() and more diagonalMatrix "Ops"

Revision 2143 - Directory Listing
Modified Tue Mar 18 21:46:41 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
some experimental determinant()s {-> tests/factorizing.R should work!}

Revision 2142 - Directory Listing
Modified Tue Mar 18 15:02:23 2008 UTC (9 years, 9 months ago) by bates
Original Path: pkg/R
update method for CHMfactor; change return type of exported C function chm_factor_update

Revision 2137 - Directory Listing
Modified Mon Mar 17 22:21:24 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
my fast determinant(<dsC..>) versions

Revision 2136 - Directory Listing
Modified Mon Mar 17 22:20:29 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
more methods for subclasses, against "ambiguity" warnings

Revision 2134 - Directory Listing
Modified Mon Mar 17 18:53:43 2008 UTC (9 years, 9 months ago) by bates
Original Path: pkg/R
Log-determinant of the parent matrix from a CHMfactor object as chm_factor_ldetL2; documentation and support

Revision 2133 - Directory Listing
Modified Sat Mar 15 18:56:50 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
fix "chol" signatures (such as no .local(..) wrappers are produced}

Revision 2130 - Directory Listing
Modified Fri Mar 14 19:27:16 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
back-compatibility: as(., "dsCMatrix") with one warning per session

Revision 2128 - Directory Listing
Modified Thu Mar 13 23:08:34 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
fix diagonal <-> sparse  buglets

Revision 2125 - Directory Listing
Modified Fri Mar 7 07:58:26 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
diagN2U() for preserving (unit-)triangularity in sparse (triang.)matrix multiplication

Revision 2123 - Directory Listing
Modified Wed Mar 5 08:44:52 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
replace many "callGeneric(U, V)" by direct <FUN>(U, V)

Revision 2120 - Directory Listing
Modified Tue Mar 4 21:44:41 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
use diagU2N in more places; also new Tsparse_diagU2N()

Revision 2115 - Directory Listing
Modified Sat Feb 23 09:23:17 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
+ forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band allowing simplified methods;  Matrix() and many man/*Rd : replace many as(*, <specific>) by as(*, <virtual superclass>)

Revision 2113 - Directory Listing
Modified Mon Feb 18 08:27:41 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
miscellaneous cleanup; typically indexing and coercion

Revision 2112 - Directory Listing
Modified Mon Feb 18 08:24:46 2008 UTC (9 years, 9 months ago) by maechler
Original Path: pkg/R
new symmpart(), skewpart()

Revision 2111 - Directory Listing
Modified Thu Jan 31 17:06:57 2008 UTC (9 years, 10 months ago) by maechler
Original Path: pkg/R
any(as.logical(i)) since any(<double)  now warns

Revision 2110 - Directory Listing
Modified Sat Jan 26 20:59:26 2008 UTC (9 years, 10 months ago) by maechler
Original Path: pkg/R
more indexing/subassignment & testing those

Revision 2109 - Directory Listing
Modified Sat Jan 26 20:18:03 2008 UTC (9 years, 10 months ago) by maechler
Original Path: pkg/R
new .Call(Tsparse_to_tCsparse,*)

Revision 2108 - Directory Listing
Modified Fri Jan 25 11:14:32 2008 UTC (9 years, 10 months ago) by maechler
Original Path: pkg/R
faster arithmetic for matching sparse triangular

Revision 2106 - Directory Listing
Modified Wed Jan 23 09:36:04 2008 UTC (9 years, 10 months ago) by maechler
Original Path: pkg/R
+ "Schur" class and many more Schur methods

Revision 2105 - Directory Listing
Modified Tue Jan 15 10:16:29 2008 UTC (9 years, 11 months ago) by maechler
Original Path: pkg/R
solve(<CHMfactor>, <numeric>) and related

Revision 2102 - Directory Listing
Modified Fri Jan 11 22:35:25 2008 UTC (9 years, 11 months ago) by maechler
Original Path: pkg/R
fix rcond(..) infinite recursion

Revision 2098 - Directory Listing
Modified Sun Dec 9 00:35:14 2007 UTC (10 years ago) by maechler
Original Path: pkg/R
indexing M[i], for *vector* i; and tests for those, see ChangeLog

Revision 2097 - Directory Listing
Modified Sat Dec 8 13:36:13 2007 UTC (10 years ago) by bates
Original Path: pkg/R
Minor code cleanup in xtabs

Revision 2096 - Directory Listing
Modified Fri Dec 7 17:44:44 2007 UTC (10 years ago) by maechler
Original Path: pkg/R
+ cov2cor(); updates to nearPD()+doc; others

Revision 2095 - Directory Listing
Modified Wed Dec 5 17:57:24 2007 UTC (10 years ago) by maechler
Original Path: pkg/R
s/sxtabs/xtabs/ + fix + doc(incl example)

Revision 2094 - Directory Listing
Modified Tue Dec 4 23:41:41 2007 UTC (10 years ago) by bates
Original Path: pkg/R
Added sparse xtabs; not yet documented and may change

Revision 2086 - Directory Listing
Modified Fri Oct 26 08:09:55 2007 UTC (10 years, 1 month ago) by maechler
Original Path: pkg/R
replace  all(lapply(...)) with an identical(..) test

Revision 2081 - Directory Listing
Modified Sat Oct 6 22:01:45 2007 UTC (10 years, 2 months ago) by maechler
Original Path: pkg/R
some more dense solve() / lu()

Revision 2073 - Directory Listing
Modified Wed Sep 26 16:17:00 2007 UTC (10 years, 2 months ago) by maechler
Original Path: pkg/R
matrix %*% pMatrix - bug fix (and a bit more)

Revision 2072 - Directory Listing
Modified Wed Sep 26 16:16:13 2007 UTC (10 years, 2 months ago) by maechler
Original Path: pkg/R
rcond() and qr.R() - unfinished (need TESTING; see FIXME)

Revision 2068 - Directory Listing
Modified Sun Sep 23 17:32:00 2007 UTC (10 years, 2 months ago) by bates
Original Path: pkg/R
Check R version before defining generics for primitives

Revision 2062 - Directory Listing
Modified Sat Sep 1 21:06:52 2007 UTC (10 years, 3 months ago) by maechler
Original Path: pkg/R
more  [<- (i=missing,j=ANY, value=Matrix) etc

Revision 2056 - Directory Listing
Modified Thu Aug 16 16:42:10 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
add explicit ... to function args in certain setMethod("[" ..) calls  {for R-devel}

Revision 2055 - Directory Listing
Modified Thu Aug 16 15:48:27 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
minor update

Revision 2054 - Directory Listing
Modified Thu Aug 16 14:17:58 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
use switch() and make work for pattern matrices

Revision 2052 - Directory Listing
Modified Wed Aug 15 13:33:19 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
finally can replace s/ncol = n/ncol/ in diag() methods

Revision 2049 - Directory Listing
Modified Tue Aug 14 22:22:24 2007 UTC (10 years, 4 months ago) by bates
Original Path: pkg/R
Remove deprecated function writeHB and its methods; switch writeMM to use CHOLMOD code; repair readMM

Revision 2048 - Directory Listing
Modified Tue Aug 14 15:09:10 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
new nearPD() {from Jens` nearcor()}; some TODO cleanup

Revision 2043 - Directory Listing
Modified Sat Aug 11 03:18:26 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
image() new defaults + docs; misc

Revision 2039 - Directory Listing
Modified Mon Aug 6 18:49:27 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
solve, %*% etc and correct test

Revision 2036 - Directory Listing
Modified Mon Aug 6 12:03:47 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
add more x

Revision 2024 - Directory Listing
Modified Thu Aug 2 07:22:44 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
release date

Revision 2018 - Directory Listing
Modified Wed Aug 1 15:22:05 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
fix <dge> %*% <dtr> + misc.cosmetics

Revision 2015 - Directory Listing
Modified Wed Jul 25 14:17:24 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
(mostly) patches from Brian re potential changes in R-devel

Revision 2011 - Directory Listing
Modified Fri Jul 20 12:56:10 2007 UTC (10 years, 4 months ago) by maechler
Original Path: pkg/R
fix for "Math2" digits="missing"

Revision 2005 - Directory Listing
Modified Wed Jul 18 14:46:20 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/R
norm() for sparse; systematic checking of norm() and all "Summary" methods

Revision 1968 - Directory Listing
Modified Sat Jul 7 22:49:12 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/R
Rsparse validation methods; finally make use of slot_dup() macro; fix R_to_C (symmetric)

Revision 1967 - Directory Listing
Modified Sat Jul 7 22:47:52 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/R
require 2.5.1

Revision 1962 - Directory Listing
Modified Sat Jul 7 18:23:28 2007 UTC (10 years, 5 months ago) by bates
Original Path: pkg/R
Slots already in RsparseMatrix were redefined in lgRMatrix

Revision 1947 - Directory Listing
Modified Thu Jul 5 08:22:00 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/R
printSpMatrix() {exported, extended, documented}

Revision 1945 - Directory Listing
Modified Wed Jul 4 18:07:07 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/R
not dropping dimnames (notably of sparse matrices)

Revision 1932 - Directory Listing
Modified Fri Jun 29 16:43:47 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/R
Math/Math2: setGeneric adaption for todays` R-devel

Revision 1922 - Directory Listing
Modified Sat Jun 23 18:08:48 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/R
xsparseVector etc (smarter coercions)

Revision 1911 - Directory Listing
Modified Tue Jun 19 16:16:58 2007 UTC (10 years, 5 months ago) by maechler
Original Path: pkg/R
colSums, ... rowMeans for all Matrices; notably sparse ones via [diln]gCMatrix_colSums C code

Revision 1905 - Directory Listing
Modified Sat Jun 16 18:37:48 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/R
misc. cleanup

Revision 1904 - Directory Listing
Modified Sat Jun 16 18:34:05 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/R
kronecker buglet fix

Revision 1903 - Directory Listing
Modified Sat Jun 16 18:31:51 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/R
+ print(<sparse>, extra args)

Revision 1901 - Directory Listing
Modified Sat Jun 16 15:52:56 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/R
added dgCMatrix_colSums for [col,row][Sums,Means]

Revision 1898 - Directory Listing
Modified Fri Jun 15 23:13:43 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/R
Don't need an interactions class.  Use the row names to store the levels - duh

Revision 1896 - Directory Listing
Modified Fri Jun 15 18:20:26 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/R
draft "indicators" class

Revision 1895 - Directory Listing
Modified Fri Jun 15 18:19:23 2007 UTC (10 years, 6 months ago) by bates
Original Path: pkg/R
added lm.fit.sparse (unexported), coercion of "factor" to dgCMatrix and dgCMatrix_cholsol

Revision 1887 - Directory Listing
Modified Thu Jun 7 09:04:34 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/R
few misc.

Revision 1886 - Directory Listing
Modified Thu Jun 7 09:03:40 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/R
another callGeneric fix

Revision 1885 - Directory Listing
Modified Thu Jun 7 08:54:16 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/R
+ another kronecker method [against infinite recursion]

Revision 1883 - Directory Listing
Modified Wed Jun 6 14:24:58 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/R
use correct "na.rm" default in all() and any(); tests for that

Revision 1870 - Directory Listing
Modified Tue Jun 5 16:28:55 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/R
give message on suppressed column names

Revision 1855 - Directory Listing
Modified Wed May 23 21:33:34 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/R
export drop0() {name is open for discussion}; document colSums

Revision 1852 - Directory Listing
Modified Mon May 21 16:42:35 2007 UTC (10 years, 6 months ago) by maechler
Original Path: pkg/R
sparseVector. <- v; rowSums/colSums; summary(<sparse>); spMatrix(.) utility

Revision 1845 - Directory Listing
Modified Wed May 16 21:24:41 2007 UTC (10 years, 7 months ago) by maechler
Original Path: pkg/R
part of sparseVector additions; in order to avoid merge conflicts

Revision 1844 - Directory Listing
Modified Wed May 16 20:40:34 2007 UTC (10 years, 7 months ago) by bates
Original Path: pkg/R
Added solve methods for CHMfactor class

Revision 1834 - Directory Listing
Modified Fri May 11 10:07:17 2007 UTC (10 years, 7 months ago) by maechler
Original Path: pkg/R
fixed symmetric Tsparse indexing

Revision 1833 - Directory Listing
Modified Tue May 8 12:25:57 2007 UTC (10 years, 7 months ago) by maechler
Original Path: pkg/R
fix duplicated subassigment: A[c(1,2,1),3] <- ..

Revision 1832 - Directory Listing
Modified Tue May 1 10:18:27 2007 UTC (10 years, 7 months ago) by maechler
Original Path: pkg/R
for "!" use (x) for R >= 2.6.0, and (e1) otherwise;
 replace "1:1" by "1L" since we now require R >= 2.5.0

Revision 1829 - Directory Listing
Modified Thu Apr 26 06:35:20 2007 UTC (10 years, 7 months ago) by maechler
Original Path: pkg/R
update; mostly for ("[", Tsparse..)"

Revision 1825 - Directory Listing
Modified Thu Apr 12 13:21:51 2007 UTC (10 years, 8 months ago) by maechler
Original Path: pkg/R
kronecker() rationalization; more setAs(), notably to virtual classes and tT <-> gT

Revision 1805 - Directory Listing
Modified Tue Mar 27 16:46:03 2007 UTC (10 years, 8 months ago) by maechler
Original Path: pkg/R
other part of move to kronecker.R

Revision 1804 - Directory Listing
Modified Tue Mar 27 16:44:46 2007 UTC (10 years, 8 months ago) by maechler
Original Path: pkg/R
omit cbind/rbind again, and use cBind/rBind only

Revision 1803 - Directory Listing
Modified Tue Mar 27 16:43:22 2007 UTC (10 years, 8 months ago) by maechler
Original Path: pkg/R
move kronecker() methods to one place; goal (not yet!): become much faster

Revision 1799 - Directory Listing
Modified Sat Mar 24 14:54:00 2007 UTC (10 years, 8 months ago) by maechler
Original Path: pkg/R
+ diff(.), + "dim<-";  cBind/rBind + cbind/rbind; indexing fixes - current state

Revision 1786 - Directory Listing
Modified Fri Feb 16 17:37:56 2007 UTC (10 years, 10 months ago) by bates
Original Path: pkg/R
Add image method for CHMfactor class

Revision 1767 - Directory Listing
Modified Mon Feb 5 16:53:17 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
eliminate infinite loop in coercions to [ln]sparseMatrix

Revision 1766 - Directory Listing
Modified Mon Feb 5 16:35:49 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
port Doug`s fix to R_to_CMatrix and reactivate .Call()s

Revision 1765 - Directory Listing
Modified Mon Feb 5 16:32:04 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
more Matrix <-> SparseM

Revision 1764 - Directory Listing
Modified Mon Feb 5 08:14:19 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
use .T.2.C and properly fix last change for tril/triu/band {not using as_Csparse}

Revision 1760 - Directory Listing
Modified Sat Feb 3 21:13:22 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
Rsparse coercions now all via R-level "workaround"; to and from  *virtual* rather than specific classes

Revision 1759 - Directory Listing
Modified Sat Feb 3 21:07:00 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
typo

Revision 1758 - Directory Listing
Modified Sat Feb 3 16:34:51 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
workaround platform-dependent segfault in R_to_CMatrix

Revision 1751 - Directory Listing
Modified Tue Jan 30 17:41:02 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R

Revision 1748 - Directory Listing
Modified Mon Jan 29 20:48:26 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
solve(<diagMatrix>)

Revision 1747 - Directory Listing
Modified Mon Jan 29 20:17:33 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
many more coercions for diag(), "!", etc; see ChangeLog

Revision 1738 - Directory Listing
Modified Tue Jan 23 17:17:15 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
nnzero(), length(), "Ops" & "Logic", many more setAs(); misc.fixes

Revision 1737 - Directory Listing
Modified Tue Jan 23 17:14:20 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
much faster "fancy" adjust in show()

Revision 1735 - Directory Listing
Modified Tue Jan 23 17:07:37 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
mv gt2tT() to Auxiliaries, and extend it

Revision 1734 - Directory Listing
Modified Tue Jan 23 16:05:53 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
moved ( + extended) dgRMatrix.R to Rsparse.R

Revision 1731 - Directory Listing
Modified Thu Jan 18 13:56:55 2007 UTC (10 years, 10 months ago) by maechler
Original Path: pkg/R
autogenerate coercions (unfinished non-activated idea)

Revision 1725 - Directory Listing
Modified Wed Jan 17 08:01:10 2007 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/R
accomplished quite a few small FIXMEs; see ChangeLog

Revision 1724 - Directory Listing
Modified Sat Jan 13 21:06:51 2007 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/R
indexing etc till yesterday

Revision 1718 - Directory Listing
Modified Sat Jan 6 10:54:53 2007 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/R
add "..." to as.matrix()

Revision 1714 - Directory Listing
Modified Thu Dec 28 22:11:32 2006 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/R
move Ops to new Ops.R; start using "Logic"

Revision 1713 - Directory Listing
Modified Thu Dec 28 22:11:08 2006 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/R
as(*, nMatrix)

Revision 1710 - Directory Listing
Modified Tue Dec 26 15:57:06 2006 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/R
more "[<-" fixes; validity of triangular sparse

Revision 1708 - Directory Listing
Modified Fri Dec 22 19:53:37 2006 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/R
rbind2() / cbind2() methods fixes + new Auxiliaries

Revision 1707 - Directory Listing
Modified Thu Dec 21 08:03:05 2006 UTC (10 years, 11 months ago) by maechler
Original Path: pkg/R
fix last (? ha!) indexing bug; cbind2/rbind2

Revision 1705 - Directory Listing
Modified Sat Dec 16 12:37:25 2006 UTC (11 years ago) by maechler
Original Path: pkg/R
any(), all() and "Compare"(<sparse>) - for release of 0.9975-7

Revision 1696 - Directory Listing
Modified Mon Dec 11 21:41:37 2006 UTC (11 years ago) by maechler
Original Path: pkg/R
fix symmetric-sparse-indexing bug

Revision 1682 - Directory Listing
Modified Fri Dec 1 18:42:40 2006 UTC (11 years ago) by maechler
Original Path: pkg/R
"fix" ddi %*% dgC dispatch

Revision 1673 - Directory Listing
Modified Mon Nov 6 20:54:26 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/R
host of changes; mostly indexing(sub-set & -assign) for symmetric and [ cbind(i,j) ]

Revision 1665 - Directory Listing
Modified Fri Nov 3 23:18:07 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/R
fully-sparse solve() for dsC; indexing & comparison fixes

Revision 1661 - Directory Listing
Modified Thu Nov 2 13:10:50 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/R
2nd round of cleanup for <sparse>_validate()

Revision 1660 - Directory Listing
Modified Thu Nov 2 11:05:35 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/R
tcrossprod(<Csp>, <Csp>); dimnames for [t]crossprod; validity now ensures correct length(Dimnames[[j]])

Revision 1659 - Directory Listing
Modified Wed Nov 1 17:50:15 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/R
extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

Revision 1657 - Directory Listing
Modified Wed Nov 1 16:29:53 2006 UTC (11 years, 1 month ago) by bates
Original Path: pkg/R
crossprod(<CsparseMatrix>,<CsparseMatrix>) added

Revision 1655 - Directory Listing
Modified Mon Oct 30 17:16:27 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/R
another set of fixes/improvements; the last prompted by Harri Kiiveri

Revision 1654 - Directory Listing
Modified Fri Oct 27 16:58:15 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/R
miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

Revision 1642 - Directory Listing
Modified Fri Oct 20 21:08:28 2006 UTC (11 years, 1 month ago) by maechler
Original Path: pkg/R
small changes related to "corMatrix" and other newly seen classes in tests/Class+Meth.R

Revision 1635 - Directory Listing
Modified Tue Oct 17 21:21:44 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
fix Matrix() %*% Diagonal() bug

Revision 1620 - Directory Listing
Modified Sat Oct 7 12:48:05 2006 UTC (11 years, 2 months ago) by bates
Original Path: pkg/R
deprecate writeHB in favor of writeMM

Revision 1619 - Directory Listing
Modified Fri Oct 6 21:29:15 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
use Csparse_drop at least once

Revision 1618 - Directory Listing
Modified Fri Oct 6 15:44:01 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
Matrix(0, d,d) should also give sparse (not diagonal); general_to_symmetric; notably for lsC*; more coercions; first cut at Csparse_drop()

Revision 1617 - Directory Listing
Modified Fri Oct 6 15:42:12 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
sub-assign to diagonal => sparse; + new bdiag() function

Revision 1615 - Directory Listing
Modified Thu Oct 5 16:30:46 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
M[i,j] <- <Matrix>

Revision 1604 - Directory Listing
Modified Fri Sep 29 15:17:24 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
fix wrong "\" found by latest R-devel

Revision 1600 - Directory Listing
Modified Fri Sep 29 13:37:25 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
fix a "subassign" case; less FIXME

Revision 1599 - Directory Listing
Modified Fri Sep 29 09:39:50 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
more coercion methods (for rare matrices)  => less exceptions

Revision 1592 - Directory Listing
Modified Thu Sep 28 15:31:17 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
"Compare" for "dMatrix"; plus a few small ones

Revision 1577 - Directory Listing
Modified Mon Sep 18 21:01:45 2006 UTC (11 years, 2 months ago) by bates
Original Path: pkg/R
Handle [t]crossprod of symmetric, sparse matrices in R code

Revision 1576 - Directory Listing
Modified Mon Sep 18 15:30:37 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
small update

Revision 1575 - Directory Listing
Modified Mon Sep 18 14:47:40 2006 UTC (11 years, 2 months ago) by maechler
Original Path: pkg/R
check 'x' slot in l.CMatrix_validate

Revision 1572 - Directory Listing
Modified Sat Sep 16 22:06:45 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
printing of NA in sparse logic Matrices

Revision 1571 - Directory Listing
Modified Sat Sep 16 21:03:12 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
several small fixes + more tests for "lMatrix" classes; "Compare"; "chol"

Revision 1570 - Directory Listing
Modified Sat Sep 16 16:23:49 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
rename lcsc_to_matrix to ncsc_* and write new lcsc_*()

Revision 1569 - Directory Listing
Modified Sat Sep 16 16:00:06 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
get rid of as.Matrix() and helper function
which were never finished, never used, never exported

Revision 1565 - Directory Listing
Modified Fri Sep 15 14:02:48 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
Matrix <-> graph coercion update (for R 2.4.0)

Revision 1556 - Directory Listing
Modified Wed Sep 13 15:26:25 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Apply the validity method we defined

Revision 1551 - Directory Listing
Modified Tue Sep 12 16:39:13 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
1st fix at "Compare"; other small fixes

Revision 1548 - Directory Listing
Modified Mon Sep 11 22:13:07 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
new nMatrix and subclasses; lsparse change to have x slot; many consequences

Revision 1545 - Directory Listing
Modified Sat Sep 9 21:50:14 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Cleanup

Revision 1542 - Directory Listing
Modified Sat Sep 9 12:05:46 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
do not define tcrossprod(<matrix>); not yet "graph::"

Revision 1538 - Directory Listing
Modified Fri Sep 8 13:18:50 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Update description after removal of Metis et al.

Revision 1513 - Directory Listing
Modified Tue Sep 5 13:16:23 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
re-add head() and tail() to exported methods

Revision 1507 - Directory Listing
Modified Mon Sep 4 18:41:34 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Merging changes from Matrix-nolmer branch

Revision 1479 - Directory Listing
Modified Fri Sep 1 23:17:59 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
What was I thinking?  I checked in files without running R CMD check and adding documentation for methods.  Now fixed.

Revision 1476 - Directory Listing
Modified Fri Sep 1 22:49:10 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Remove redundant method.

Revision 1474 - Directory Listing
Modified Fri Sep 1 22:35:29 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Added direct method to CsparseMatrix from graphNEL

Revision 1472 - Directory Listing
Modified Fri Sep 1 15:31:04 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
miscellaneous tweaks; moved some method definitions higher up

Revision 1467 - Directory Listing
Modified Wed Aug 30 21:35:09 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
several smallish fixes

Revision 1463 - Directory Listing
Modified Tue Aug 29 22:30:57 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Promotion of %*% and solve to RHS of ddenseMatrix

Revision 1462 - Directory Listing
Modified Tue Aug 29 16:34:49 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Generalize %*% methods for sparse matrices

Revision 1460 - Directory Listing
Modified Tue Aug 29 14:07:52 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Promote %*% methods to ddenseMatrix class

Revision 1459 - Directory Listing
Modified Tue Aug 29 07:18:18 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
cosmetic change in show()

Revision 1456 - Directory Listing
Modified Mon Aug 28 15:36:16 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
Arith( dMatrix, dMatrix)

Revision 1455 - Directory Listing
Modified Mon Aug 28 15:35:44 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
Matrix(*, forceCheck)

Revision 1453 - Directory Listing
Modified Sun Aug 27 16:16:35 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Added triu, tril and band for ddenseMatrix objects.

Revision 1452 - Directory Listing
Modified Sat Aug 26 18:24:13 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
tril,triu,band: triangular only if "square"

Revision 1450 - Directory Listing
Modified Sat Aug 26 13:01:22 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Direct call to dup_mMatrix_as_dgeMatrix

Revision 1448 - Directory Listing
Modified Sat Aug 26 03:29:36 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Move methods to the CsparseMatrix class

Revision 1447 - Directory Listing
Modified Fri Aug 25 20:38:36 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones

Revision 1445 - Directory Listing
Modified Fri Aug 25 14:54:54 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Bug fix due to Emmanuel Tillard

Revision 1444 - Directory Listing
Modified Fri Aug 25 14:39:45 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
a bit more "MatrixFactorization" ..

Revision 1443 - Directory Listing
Modified Fri Aug 25 10:44:48 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
1st stab at "MatrixFactorization" class; exporting CHMfactor etc

Revision 1436 - Directory Listing
Modified Thu Aug 24 18:22:39 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Use dup_mMatrix_as_dgeMatrix

Revision 1435 - Directory Listing
Modified Thu Aug 24 18:20:36 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Replaced by CHOLMOD functions

Revision 1432 - Directory Listing
Modified Thu Aug 24 16:21:18 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
eliminate classed argument from dup_mM*() and dependencies

Revision 1429 - Directory Listing
Modified Wed Aug 23 22:12:52 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

Revision 1428 - Directory Listing
Modified Wed Aug 23 21:32:30 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Disable chol methods for lsCMatrix class temporarily; Comment out old code in src/lsCMatrix.[ch]

Revision 1427 - Directory Listing
Modified Wed Aug 23 21:29:22 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Add Cholesky generic and method for dsCMatrix.  Use CHOLMOD for chol().

Revision 1425 - Directory Listing
Modified Wed Aug 23 21:25:32 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

Revision 1422 - Directory Listing
Modified Tue Aug 22 22:51:23 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Replace ssc_transpose call

Revision 1407 - Directory Listing
Modified Mon Aug 21 15:24:47 2006 UTC (11 years, 3 months ago) by maechler
Original Path: pkg/R
rename class "LU" to "denseLU" and make "LU" virtual

Revision 1402 - Directory Listing
Modified Sun Aug 20 16:15:38 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Return correct # of coefs; fix cut-and-paste errors

Revision 1396 - Directory Listing
Modified Sun Aug 20 03:17:19 2006 UTC (11 years, 3 months ago) by bates
Original Path: pkg/R
Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted

Revision 1391 - Directory Listing
Modified Fri Aug 18 15:42:24 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
small update; extend LU-class example

Revision 1390 - Directory Listing
Modified Fri Aug 18 15:41:36 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
fix last fix

Revision 1389 - Directory Listing
Modified Fri Aug 18 13:53:33 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse

Revision 1387 - Directory Listing
Modified Thu Aug 17 22:31:34 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
Use C code for diagU2N in CsparseMatrix classes

Revision 1385 - Directory Listing
Modified Thu Aug 17 22:30:01 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
Added solve methods for dgCMatrix and documentation

Revision 1383 - Directory Listing
Modified Thu Aug 17 13:57:53 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
add sparse LU and QR decompositions

Revision 1380 - Directory Listing
Modified Tue Aug 15 22:31:30 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

Revision 1376 - Directory Listing
Modified Tue Aug 15 18:22:54 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
use Csparse_to_logical

Revision 1375 - Directory Listing
Modified Tue Aug 15 18:21:49 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general

Revision 1374 - Directory Listing
Modified Tue Aug 15 18:17:44 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
fix replCmat, using new C Csparse_symmetric_to_general

Revision 1372 - Directory Listing
Modified Mon Aug 14 21:10:16 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
Consolidate general coercion methods in Csparse.R

Revision 1369 - Directory Listing
Modified Mon Aug 14 18:54:04 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

Revision 1367 - Directory Listing
Modified Sat Aug 12 17:33:07 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
Generalize conversions

Revision 1366 - Directory Listing
Modified Sat Aug 12 17:31:39 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
Generalize conversions

Revision 1360 - Directory Listing
Modified Tue Aug 8 17:29:03 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
crossprod and tcrossprod for TsparseMatrix

Revision 1357 - Directory Listing
Modified Tue Aug 8 16:26:38 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
.is.diagonal() and as_geClass() fixes

Revision 1352 - Directory Listing
Modified Mon Aug 7 18:31:12 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
Set stype in C function Csparse_crossprod and avoid R-level conversions

Revision 1351 - Directory Listing
Modified Mon Aug 7 16:51:14 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
use speedier crossprod() for "dgC" - still slower than t(.) %*% .

Revision 1349 - Directory Listing
Modified Mon Aug 7 09:05:42 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
tril() etc also for T* and Rsparse

Revision 1348 - Directory Listing
Modified Mon Aug 7 09:05:00 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
sparse -> graph fix

Revision 1347 - Directory Listing
Modified Mon Aug 7 08:47:43 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
use utils:::tail.matrix directly

Revision 1343 - Directory Listing
Modified Wed Aug 2 20:43:52 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
 + factorNames2char() utility for nicer warnings

Revision 1342 - Directory Listing
Modified Tue Aug 1 20:26:45 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
hatTrace and warnings about boundary convergence

Revision 1336 - Directory Listing
Modified Mon Jul 31 23:05:04 2006 UTC (11 years, 4 months ago) by bates
Original Path: pkg/R
Add hatTrace function

Revision 1335 - Directory Listing
Modified Mon Jul 31 12:11:35 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
change unused class "correlation" to "corMatrix"

Revision 1333 - Directory Listing
Modified Mon Jul 31 08:32:50 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
cleanup

Revision 1332 - Directory Listing
Modified Thu Jul 27 13:42:18 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
more dgRMatrix coercions (5 days ago)

Revision 1331 - Directory Listing
Modified Sat Jul 22 17:59:53 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

Revision 1330 - Directory Listing
Modified Fri Jul 21 08:28:18 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
pass verbose argument to (gl)mer_MCMCsamp() and use it in C code

Revision 1329 - Directory Listing
Modified Fri Jul 21 06:47:06 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
miscellaneous mostly related to sparse indexing

Revision 1327 - Directory Listing
Modified Fri Jul 21 06:43:31 2006 UTC (11 years, 4 months ago) by maechler
Original Path: pkg/R
add some SparseM <-> Matrix conversions

Revision 1326 - Directory Listing
Modified Wed Jul 19 14:58:26 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/R
head and tail methods and reminder in TODO of classes after subscripting

Revision 1323 - Directory Listing
Modified Mon Jul 17 18:34:45 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/R
Add coersion from CHMfactor to sparseMatrix

Revision 1321 - Directory Listing
Modified Mon Jul 17 18:29:48 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/R
Remove leading blanks in a string.  They are being tabified and result in incorrect alignment

Revision 1320 - Directory Listing
Modified Mon Jul 17 17:14:33 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/R
Added a "To Do" about always printing the log-likelihood and the restricted-log-likelihood for an lmer object.

Revision 1319 - Directory Listing
Modified Mon Jul 17 13:08:04 2006 UTC (11 years, 5 months ago) by maechler
Original Path: pkg/R
non0ind() extended for symmetric sparse matrices -> correct printing

Revision 1315 - Directory Listing
Modified Mon Jul 10 16:08:05 2006 UTC (11 years, 5 months ago) by maechler
Original Path: pkg/R
miscellaneous small things, including extended tests; see also ChangeLog

Revision 1314 - Directory Listing
Modified Mon Jul 10 15:23:48 2006 UTC (11 years, 5 months ago) by maechler
Original Path: pkg/R
add lgCMatrix_diag()

Revision 1306 - Directory Listing
Modified Thu Jul 6 15:14:12 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/R
Establish new class glmer; modify validity check on pedigree to account for nonparallel patterns of missingness in parents

Revision 1305 - Directory Listing
Modified Sat Jul 1 16:18:39 2006 UTC (11 years, 5 months ago) by maechler
Original Path: pkg/R
coercion pMatrix -> Tsparse

Revision 1303 - Directory Listing
Modified Mon Jun 26 14:33:16 2006 UTC (11 years, 5 months ago) by bates
Original Path: pkg/R
Correction in deviance method for mer objects; some cleanup

Revision 1302 - Directory Listing
Modified Mon Jun 19 15:36:44 2006 UTC (11 years, 5 months ago) by maechler
Original Path: pkg/R
fix segfault from wrong formula

Revision 1301 - Directory Listing
Modified Mon Jun 12 10:52:45 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/R
Corrected naming of columns of an mcmcsamp object

Revision 1299 - Directory Listing
Modified Mon Jun 12 08:06:21 2006 UTC (11 years, 6 months ago) by maechler
Original Path: pkg/R
mcmcsamp()[,"deviance"] was wrong column

Revision 1297 - Directory Listing
Modified Sat Jun 10 19:54:41 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/R
added simulestimate for lmer but hidden in NAMESPACE

Revision 1295 - Directory Listing
Modified Fri Jun 9 21:47:22 2006 UTC (11 years, 6 months ago) by maechler
Original Path: pkg/R
coercion to and multiplication of diagonal and sparse matrices

Revision 1293 - Directory Listing
Modified Thu Jun 8 16:05:41 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/R
No longer create a generic for qqmath; add deviance to mcmcsamp

Revision 1292 - Directory Listing
Modified Thu Jun 8 16:04:50 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/R
No longer create a generic for qqmath

Revision 1290 - Directory Listing
Modified Thu Jun 8 09:30:21 2006 UTC (11 years, 6 months ago) by maechler
Original Path: pkg/R
implemented all 4 of {rowSums(), ... colMeans()}

Revision 1289 - Directory Listing
Modified Tue Jun 6 14:48:37 2006 UTC (11 years, 6 months ago) by maechler
Original Path: pkg/R
R >= 2.4 needs more hacking for base::as.matrix assignment

Revision 1288 - Directory Listing
Modified Thu Jun 1 20:41:20 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/R
add reference line and grid to qqmath method for ranef.lmer

Revision 1286 - Directory Listing
Modified Tue May 30 16:00:35 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/R
Functions to allow nested grouping factors to be specified as (1|foo/bar)

Revision 1285 - Directory Listing
Modified Sat May 27 20:12:08 2006 UTC (11 years, 6 months ago) by maechler
Original Path: pkg/R
a few small changes, comments - on the way to get to a better "Compare" (group method) approach

Revision 1284 - Directory Listing
Modified Sat May 27 20:01:11 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/R
More careful checks in subbars and friends, code for calculating inbreeding coefficients directly from the pedigree

Revision 1283 - Directory Listing
Modified Sat May 27 19:51:01 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/R
Add isNested and for an identity permutation for nested grouping factors

Revision 1282 - Directory Listing
Modified Wed May 24 17:00:12 2006 UTC (11 years, 6 months ago) by maechler
Original Path: pkg/R
eliminate a few old "FIXME"s (and add a new one :-)

Revision 1280 - Directory Listing
Modified Tue May 23 08:01:44 2006 UTC (11 years, 6 months ago) by maechler
Original Path: pkg/R
useDynlib(*, .registration=TRUE)

Revision 1276 - Directory Listing
Modified Mon May 22 19:14:39 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/R
Copy colcount in CHOLMOD supernodal factorization

Revision 1274 - Directory Listing
Modified Mon May 22 18:57:35 2006 UTC (11 years, 6 months ago) by bates
Original Path: pkg/R
Add a generic for qqmath (maybe not a good idea)

Revision 1271 - Directory Listing
Modified Thu May 18 06:47:09 2006 UTC (11 years, 7 months ago) by maechler
Original Path: pkg/R
some  "sparse <-> graph"  updates

Revision 1270 - Directory Listing
Modified Thu May 18 06:44:43 2006 UTC (11 years, 7 months ago) by maechler
Original Path: pkg/R
cosmetic, comments

Revision 1268 - Directory Listing
Modified Wed May 17 17:42:09 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/R
lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

Revision 1267 - Directory Listing
Modified Tue May 16 19:12:13 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/R
single argument [t]crossprod now returns a symmetric matrix

Revision 1266 - Directory Listing
Modified Tue May 16 19:11:00 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/R
Added check on sire and dam indices to pedigree function and class validation function

Revision 1265 - Directory Listing
Modified Mon May 15 22:36:59 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/R
Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

Revision 1264 - Directory Listing
Modified Mon May 15 21:05:20 2006 UTC (11 years, 7 months ago) by maechler
Original Path: pkg/R
Tsparse indexing fix

Revision 1262 - Directory Listing
Modified Sun Apr 30 15:40:39 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/R
Add special solve method for unit upper triangular matrices

Revision 1261 - Directory Listing
Modified Sun Apr 30 15:39:44 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/R
Add chol method for pedigree objects

Revision 1259 - Directory Listing
Modified Tue Apr 25 18:42:22 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/R
Unit diagonal property in transpose of dtCMatrix

Revision 1258 - Directory Listing
Modified Fri Apr 21 15:44:39 2006 UTC (11 years, 7 months ago) by maechler
Original Path: pkg/R
make pedigree class more memory-efficient; add pedigree()

Revision 1255 - Directory Listing
Modified Wed Apr 19 14:16:59 2006 UTC (11 years, 7 months ago) by bates
Original Path: pkg/R
Remove postVar generic and methods

Revision 1253 - Directory Listing
Modified Wed Apr 19 09:17:14 2006 UTC (11 years, 8 months ago) by maechler
Original Path: pkg/R
tT -> tC; and diagU2N() for solve(<dtC>)

Revision 1251 - Directory Listing
Modified Sat Apr 15 13:08:26 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/R
Add CSparse-based solve methods for dtCMatrix class

Revision 1249 - Directory Listing
Modified Sat Apr 15 12:50:20 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/R
modified indentation

Revision 1247 - Directory Listing
Modified Thu Apr 13 11:12:51 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/R
pedigree class added

Revision 1246 - Directory Listing
Modified Wed Apr 12 22:11:14 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/R
Initial version of methods for the pedigree class.  The most important
method is the coercion to the dtCMatrix class.

Revision 1245 - Directory Listing
Modified Wed Apr 12 20:31:18 2006 UTC (11 years, 8 months ago) by maechler
Original Path: pkg/R
fix for <sparse> %*% <integer_matrix>

Revision 1243 - Directory Listing
Modified Sun Apr 9 00:02:26 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/R
Added qqmath method for ranef.lmer and postVar for ranef methods

Revision 1241 - Directory Listing
Modified Mon Apr 3 20:51:37 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/R
Added a qqmath method for the ranef.lmer class.

Revision 1240 - Directory Listing
Modified Sun Apr 2 23:45:47 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/R
Add warning about ignored arguments to coef method for lmer

Revision 1238 - Directory Listing
Modified Thu Mar 30 19:56:09 2006 UTC (11 years, 8 months ago) by maechler
Original Path: pkg/R
coercions from dgC to triangular (dtC) and symmetric (dsC), etc

Revision 1236 - Directory Listing
Modified Thu Mar 23 15:16:17 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/R
Propagate DimNames in dsyMatrix_as_dspMatrix

Revision 1234 - Directory Listing
Modified Tue Mar 21 12:33:28 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/R
Change name of lmer.ranef class to ranef.lmer, add coef.lmer and update plot methods for these classes

Revision 1232 - Directory Listing
Modified Tue Mar 21 11:07:55 2006 UTC (11 years, 8 months ago) by bates
Original Path: pkg/R
modifying return value of ranef method and adding residuals method

Revision 1227 - Directory Listing
Modified Wed Mar 15 17:42:03 2006 UTC (11 years, 9 months ago) by maechler
Original Path: pkg/R
use  isPacked() [internal] instead of private class "packedMatrix"

Revision 1226 - Directory Listing
Modified Mon Mar 13 14:07:58 2006 UTC (11 years, 9 months ago) by maechler
Original Path: pkg/R
sparse: "[<-" and better arithmetic; other tweaks

Revision 1225 - Directory Listing
Modified Mon Mar 13 14:06:17 2006 UTC (11 years, 9 months ago) by maechler
Original Path: pkg/R
enable M[M < 10] for dense

Revision 1223 - Directory Listing
Modified Tue Mar 7 11:06:46 2006 UTC (11 years, 9 months ago) by maechler
Original Path: pkg/R
lmer(): dropped non-sensical 'x' and 'y' arguments

Revision 1222 - Directory Listing
Modified Tue Mar 7 11:05:08 2006 UTC (11 years, 9 months ago) by maechler
Original Path: pkg/R
lmer(): non-trivial summary() method -> summary.*mer classes

Revision 1218 - Directory Listing
Modified Mon Feb 20 22:47:20 2006 UTC (11 years, 9 months ago) by bates
Original Path: pkg/R
Used cholmod_vertcat and cholmod_horzcat for cbind2 and rbind2 in the dsparseMatrix virtual class

Revision 1215 - Directory Listing
Modified Wed Feb 8 17:54:57 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/R
add simplistic "[<-" method for dgT

Revision 1214 - Directory Listing
Modified Wed Feb 8 07:43:07 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/R
require(utils) in .OnLoad()

Revision 1213 - Directory Listing
Modified Tue Feb 7 23:44:07 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/R
Fix case of cbind(successes, failures) for lmer fitting a GLMM (see Changelog)

Revision 1209 - Directory Listing
Modified Wed Jan 25 23:42:57 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/R
Use coersion for transpose of dtCMatrix class

Revision 1208 - Directory Listing
Modified Wed Jan 25 15:19:29 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/R
Move dtTMatrix_to_dtCMatrix to CHOLMOD code

Revision 1202 - Directory Listing
Modified Mon Jan 23 16:55:43 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/R
add to tests: now also check  setAs("matrix", *)

Revision 1201 - Directory Listing
Modified Mon Jan 23 16:04:12 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/R
Class cleanup; particularly ldense* ones

Revision 1198 - Directory Listing
Modified Mon Jan 23 15:01:02 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/R
no 'factors' slot in l2d_Matrix / d2l_Matrix

Revision 1189 - Directory Listing
Modified Fri Jan 20 18:13:39 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/R
"dsy" no longer extends "dge"; other small fixes

Revision 1188 - Directory Listing
Modified Fri Jan 20 18:12:04 2006 UTC (11 years, 10 months ago) by maechler
Original Path: pkg/R
fix mcmcsamp(*, saveb=TRUE)

Revision 1180 - Directory Listing
Modified Thu Jan 19 00:43:37 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/R
Over to Martin for release 0.995-2

Revision 1178 - Directory Listing
Modified Wed Jan 18 15:38:12 2006 UTC (11 years, 10 months ago) by bates
Original Path: pkg/R
Modifications to lmer.R - still not working

Revision 1175 - Directory Listing
Modified Tue Jan 17 23:41:36 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Munging the data frame

Revision 1174 - Directory Listing
Modified Mon Jan 16 20:03:48 2006 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/R
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings

Revision 1171 - Directory Listing
Modified Mon Jan 16 16:59:46 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Extract the slot contents from S4 objects, not the component

Revision 1170 - Directory Listing
Modified Mon Jan 16 16:38:00 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Throw an error for mcmcsamp on a GLMM, at least until it is implemented

Revision 1168 - Directory Listing
Modified Mon Jan 16 14:40:39 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Modifications to propagate column names from an mer object to a VarCorr summary

Revision 1166 - Directory Listing
Modified Sun Jan 15 19:18:20 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
modifications to lmer and related classes

Revision 1165 - Directory Listing
Modified Sat Jan 14 23:41:55 2006 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/R
new coercion to dtr* and dsy* using isSymmetric() and isTriangular(); fix validity checking; some class descriptions

Revision 1162 - Directory Listing
Modified Fri Jan 13 23:47:38 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

Revision 1160 - Directory Listing
Modified Fri Jan 13 23:45:45 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Updating the list of slots on factorable and non-factorable classes

Revision 1156 - Directory Listing
Modified Thu Jan 12 23:39:56 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Remove redundant registration of dspMatrix_trf; incorporate wts and wrkres slots in mer class

Revision 1150 - Directory Listing
Modified Thu Jan 12 03:41:25 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Switch to supernodal Cholesky representation of mer objects

Revision 1148 - Directory Listing
Modified Thu Jan 12 03:37:40 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Incorporation of correlation class

Revision 1147 - Directory Listing
Modified Thu Jan 12 03:36:53 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Removal of dgBCMatrix class and coercion function

Revision 1145 - Directory Listing
Modified Thu Jan 12 03:26:06 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Remove dgBCMatrix.[ch] and dependencies

Revision 1127 - Directory Listing
Modified Tue Jan 10 18:11:23 2006 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/R
add ", drop = FALSE" in lmer.coef constructions; plus a few comments

Revision 1123 - Directory Listing
Modified Tue Jan 10 17:04:29 2006 UTC (11 years, 11 months ago) by bates
Original Path: pkg/R
Release 0.99-6

Revision 1109 - Directory Listing
Modified Tue Jan 3 16:42:31 2006 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/R
"diagonalMatrix" class and subclasses with a few methods; very basic "ltTMatrix" methods

Revision 1108 - Directory Listing
Modified Mon Jan 2 23:02:07 2006 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/R
isSymmetric() generic must match isSymmetric in R-devel

Revision 1098 - Directory Listing
Modified Thu Dec 29 11:38:59 2005 UTC (11 years, 11 months ago) by maechler
Original Path: pkg/R
some 2-argument-tcrossprod methods (and test svn)

Revision 1090 - Directory Listing
Modified Mon Dec 12 13:58:10 2005 UTC (12 years ago) by maechler
Original Path: pkg/R
Brian's version of 2-arg tcrossprod()

Revision 1087 - Directory Listing
Modified Fri Dec 9 20:55:39 2005 UTC (12 years ago) by maechler
Original Path: pkg/R
make tcrossprod() use 2 arguments (x, y=NULL)

Revision 1084 - Directory Listing
Modified Fri Dec 9 15:41:00 2005 UTC (12 years ago) by maechler
Original Path: pkg/R
thinko in dimNamesCheck()

Revision 1063 - Directory Listing
Modified Sat Nov 26 16:29:39 2005 UTC (12 years ago) by bates
Original Path: pkg/R
Add zapsmall method

Revision 1059 - Directory Listing
Modified Wed Nov 23 22:20:13 2005 UTC (12 years ago) by bates
Original Path: pkg/R
Matrix multiplication and coersion at higher level

Revision 1056 - Directory Listing
Modified Tue Nov 22 16:40:49 2005 UTC (12 years ago) by maechler
Original Path: pkg/R
require(methods) needed according to the docs

Revision 1038 - Directory Listing
Modified Fri Nov 11 21:22:08 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/R
Adding PACKAGE = to .Call

Revision 1037 - Directory Listing
Modified Fri Nov 11 14:57:22 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/R
Adding PACKAGE = to .Call lines

Revision 987 - Directory Listing
Modified Tue Oct 25 17:38:46 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/R
need a drop = FALSE in a subscripting operation

Revision 986 - Directory Listing
Modified Fri Oct 21 19:36:30 2005 UTC (12 years, 1 month ago) by bates
Original Path: pkg/R
Remove references to mer2 and mltloc.rda which are now in a branch

Revision 984 - Directory Listing
Modified Tue Oct 11 18:08:46 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
Tidying up

Revision 981 - Directory Listing
Modified Tue Oct 11 14:12:19 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
Evaluate model frame before glm model of fixed effects

Revision 979 - Directory Listing
Modified Tue Oct 11 00:02:45 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
Added a FIXME - will fix later

Revision 978 - Directory Listing
Modified Mon Oct 10 13:54:09 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
More mer2 modifications

Revision 973 - Directory Listing
Modified Fri Oct 7 20:15:08 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
isSymmetric() & simulate() updates; sparse subsetting

Revision 972 - Directory Listing
Modified Fri Oct 7 20:13:24 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
comments and more (hidden) as.Matrix utilities

Revision 967 - Directory Listing
Modified Thu Oct 6 03:07:23 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
More updates on lmer - still not quite correct

Revision 965 - Directory Listing
Modified Wed Oct 5 16:57:55 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
(comments)

Revision 963 - Directory Listing
Modified Mon Oct 3 01:44:56 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
Modifications to mer2

Revision 959 - Directory Listing
Modified Sat Oct 1 20:10:20 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
dtC -> dgC coercion

Revision 958 - Directory Listing
Modified Sat Oct 1 20:08:51 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
add "self-documenting" argument names

Revision 956 - Directory Listing
Modified Fri Sep 30 17:28:00 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...

Revision 954 - Directory Listing
Modified Wed Sep 28 19:34:31 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
more "Compare" and some "!" methods; expm() for sparse; updated tests

Revision 953 - Directory Listing
Modified Wed Sep 28 19:31:36 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
move "factors" slot to "Matrix"

Revision 949 - Directory Listing
Modified Wed Sep 28 09:17:08 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
cleanup

Revision 946 - Directory Listing
Modified Wed Sep 28 08:56:42 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
some "Summary" methods; some "Compare" group methods; logical dense matrices

Revision 940 - Directory Listing
Modified Tue Sep 27 00:50:35 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

Revision 939 - Directory Listing
Modified Tue Sep 20 17:23:24 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
More careful checking for linear mixed model

Revision 936 - Directory Listing
Modified Tue Sep 20 10:15:26 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
move setGeneric to AllGeneric

Revision 928 - Directory Listing
Modified Mon Sep 19 21:10:59 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
crossprod and tcrossprod for Tsparse

Revision 925 - Directory Listing
Modified Mon Sep 19 19:01:31 2005 UTC (12 years, 2 months ago) by maechler
Original Path: pkg/R
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more  "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

Revision 923 - Directory Listing
Modified Sun Sep 18 23:41:45 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
More progress on incorporating CHOLMOD - still not passing CMD check

Revision 922 - Directory Listing
Modified Sun Sep 18 16:33:54 2005 UTC (12 years, 2 months ago) by bates
Original Path: pkg/R
Added CHOLMOD-based C functions.  Still need methods defined in R and some error checking

Revision 919 - Directory Listing
Modified Fri Sep 16 17:27:06 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
new compressed_non_0_ij()

Revision 910 - Directory Listing
Modified Fri Sep 9 08:12:58 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
comments & update for Diagonal

Revision 908 - Directory Listing
Modified Thu Sep 8 15:30:08 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
cbind() / cbind2() methods for R >= 2.2.0

Revision 904 - Directory Listing
Modified Wed Sep 7 20:43:59 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/R
Fix readHB according to bug report from Roger Koenker

Revision 902 - Directory Listing
Modified Tue Sep 6 14:07:10 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/R


Revision 901 - Directory Listing
Modified Tue Sep 6 01:26:11 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/R
Add "start" argument to lmer

Revision 898 - Directory Listing
Modified Sat Sep 3 21:58:37 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
+ prototypes for validity; pMatrix validity

Revision 897 - Directory Listing
Modified Sat Sep 3 21:57:55 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
cosmetic: stay within integers

Revision 892 - Directory Listing
Modified Fri Sep 2 13:40:47 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
move some methods from lgT to lsparse

Revision 888 - Directory Listing
Modified Thu Sep 1 13:46:21 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/R
New simulate method for lmer objects

Revision 887 - Directory Listing
Modified Wed Aug 31 20:31:47 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
uplo &diag slots now go with superclass triangular* or symmetric*

Revision 886 - Directory Listing
Modified Wed Aug 31 17:49:47 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do

Revision 880 - Directory Listing
Modified Tue Aug 30 14:36:41 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/R
More coercion methods

Revision 879 - Directory Listing
Modified Tue Aug 30 14:35:05 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/R
Added simulate generic and method

Revision 878 - Directory Listing
Modified Sun Aug 28 13:57:39 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/R
Add simulate method for lmer

Revision 876 - Directory Listing
Modified Sat Aug 27 22:50:57 2005 UTC (12 years, 3 months ago) by bates
Original Path: pkg/R
clean up conversion of graphNEL to sparseMatrix

Revision 875 - Directory Listing
Modified Sat Aug 27 21:29:21 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
indexing (mainly denseMatrix) - using "vector" indices

Revision 874 - Directory Listing
Modified Sat Aug 27 21:27:51 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
prepare graphNEL coercion both for directed and undir.

Revision 871 - Directory Listing
Modified Fri Aug 26 17:26:49 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples

Revision 870 - Directory Listing
Modified Fri Aug 26 17:25:03 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
"Summary" method -> found R-bug

Revision 868 - Directory Listing
Modified Fri Aug 19 17:01:11 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
printing of sparse logicals; "[" reorganization (part 1)

Revision 867 - Directory Listing
Modified Fri Aug 19 16:59:46 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
new "gTMatrix" virtual class

Revision 865 - Directory Listing
Modified Fri Aug 19 16:57:49 2005 UTC (12 years, 3 months ago) by maechler
Original Path: pkg/R
setAs( to "lgTMatrix" )

Revision 864 - Directory Listing
Modified Thu Aug 18 21:36:49 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
It's 'warning', not 'warn'

Revision 862 - Directory Listing
Modified Thu Aug 18 21:31:07 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Coercion method for graphNEL to sparseMatrix class

Revision 861 - Directory Listing
Modified Thu Aug 18 21:29:52 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Fix column labels on mcmcsamp for glmer objects

Revision 857 - Directory Listing
Modified Tue Aug 16 22:19:58 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Change method of reading Harwell-Boeing matrix format and change example

Revision 856 - Directory Listing
Modified Tue Aug 16 20:20:13 2005 UTC (12 years, 4 months ago) by maechler
Original Path: pkg/R
small fixups

Revision 855 - Directory Listing
Modified Tue Aug 16 18:57:36 2005 UTC (12 years, 4 months ago) by maechler
Original Path: pkg/R
first place to use callNextMethod()

Revision 852 - Directory Listing
Modified Tue Aug 16 17:52:16 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Move readHB and readMM to R code and allow the use of connections

Revision 851 - Directory Listing
Modified Tue Aug 16 17:39:38 2005 UTC (12 years, 4 months ago) by maechler
Original Path: pkg/R
export  dgR*, dsR* & dtR* Matrix - and "fix" stubs

Revision 848 - Directory Listing
Modified Thu Aug 11 07:41:59 2005 UTC (12 years, 4 months ago) by maechler
Original Path: pkg/R
+"denseMatrix" class; export defined but unused classes

Revision 846 - Directory Listing
Modified Wed Aug 10 22:08:35 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Release 0.98-3

Revision 843 - Directory Listing
Modified Wed Aug 10 18:24:18 2005 UTC (12 years, 4 months ago) by maechler
Original Path: pkg/R
comment

Revision 842 - Directory Listing
Modified Tue Aug 9 14:23:37 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Modify column names for transformed parameters in mcmcsamp

Revision 835 - Directory Listing
Modified Mon Aug 8 13:33:18 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Add writeHB and writeMM methods and generic

Revision 833 - Directory Listing
Modified Mon Aug 8 08:35:17 2005 UTC (12 years, 4 months ago) by maechler
Original Path: pkg/R
fixing to unused Lower/Upper Triangular test functions

Revision 832 - Directory Listing
Modified Mon Aug 8 08:33:55 2005 UTC (12 years, 4 months ago) by maechler
Original Path: pkg/R
lmer()`s "model = T/F" and control arguments; add comments and "FIXME"s

Revision 831 - Directory Listing
Modified Mon Aug 8 08:24:10 2005 UTC (12 years, 4 months ago) by maechler
Original Path: pkg/R
note on setGeneric("lmer",*) - match.call() pecularity

Revision 829 - Directory Listing
Modified Mon Aug 8 08:21:47 2005 UTC (12 years, 4 months ago) by maechler
Original Path: pkg/R
re-assign as.matrix() in base (!) -- experimental

Revision 825 - Directory Listing
Modified Sun Aug 7 15:22:33 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Harwell-Boeing and MatrixMarket formats

Revision 824 - Directory Listing
Modified Sat Aug 6 20:01:51 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Allow mcmcsamp on transformed parameters

Revision 823 - Directory Listing
Modified Sat Jul 30 21:35:38 2005 UTC (12 years, 4 months ago) by maechler
Original Path: pkg/R
+ tcrossprod() method for simple "matrix" and "numeric"

Revision 820 - Directory Listing
Modified Wed Jul 27 23:07:04 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Version 0.98-1

Revision 814 - Directory Listing
Modified Thu Jul 21 23:05:52 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Working version of the glmmMCMC producing an mcmc object

Revision 813 - Directory Listing
Modified Thu Jul 21 16:41:42 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
New sampling for glmerMCMC but intermediates are not appropriately PROTECTed

Revision 812 - Directory Listing
Modified Thu Jul 21 14:59:04 2005 UTC (12 years, 4 months ago) by bates
Original Path: pkg/R
Added an rWishart function, which should later be moved to the stats package

Revision 811 - Directory Listing
Modified Thu Jul 14 15:37:41 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Modifications to glmmMCMC

Revision 810 - Directory Listing
Modified Thu Jul 14 13:48:38 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Modifications to glmmMCMC

Revision 809 - Directory Listing
Modified Tue Jul 12 23:00:50 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Release 0.97-4 with fix suggested by DTL

Revision 806 - Directory Listing
Modified Fri Jul 8 15:38:43 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Preliminary version of glmmMCMC

Revision 804 - Directory Listing
Modified Thu Jul 7 20:05:47 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Preparing for glmmMCMC

Revision 802 - Directory Listing
Modified Wed Jul 6 23:55:39 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
got glmer_fixed_update working

Revision 801 - Directory Listing
Modified Wed Jul 6 16:24:33 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Updates for release 0.97-2

Revision 799 - Directory Listing
Modified Tue Jul 5 00:37:34 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Increase default maxIter and calculate nAGQ more carefully

Revision 792 - Directory Listing
Modified Sat Jul 2 20:58:14 2005 UTC (12 years, 5 months ago) by maechler
Original Path: pkg/R
cosmetic

Revision 787 - Directory Listing
Modified Thu Jun 30 16:59:12 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Still modifying glmer_devAGQ

Revision 784 - Directory Listing
Modified Sun Jun 26 03:42:21 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
More work on MCMC (still incomplete)

Revision 782 - Directory Listing
Modified Fri Jun 24 23:06:33 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Adding MCMC capability (currently incomplete)

Revision 781 - Directory Listing
Modified Fri Jun 24 15:38:43 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Further development on AGQ and MCMC for glmm models

Revision 780 - Directory Listing
Modified Sun Jun 19 14:59:30 2005 UTC (12 years, 5 months ago) by bates
Original Path: pkg/R
Release 0.96-3

Revision 779 - Directory Listing
Modified Wed Jun 15 15:52:19 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/R
Adding AGQ (but not yet correct)

Revision 777 - Directory Listing
Modified Tue Jun 14 04:02:57 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/R
release 0.96-2

Revision 776 - Directory Listing
Modified Mon Jun 13 19:45:04 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/R
Setting up for AGQ

Revision 775 - Directory Listing
Modified Mon Jun 13 01:22:28 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/R
Factoring C code in preparation for AGQ

Revision 774 - Directory Listing
Modified Fri Jun 10 18:40:54 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/R
Moving devLaplace calculations to C code

Revision 772 - Directory Listing
Modified Thu Jun 9 16:57:55 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/R
Prepare for release 0.96-1

Revision 769 - Directory Listing
Modified Wed Jun 8 23:47:45 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/R
Moving lmer to the Matrix package

Revision 760 - Directory Listing
Modified Mon Jun 6 15:48:13 2005 UTC (12 years, 6 months ago) by bates
Original Path: pkg/R
Fix matrix multiplication methods

Revision 731 - Directory Listing
Modified Tue May 17 17:17:29 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/R
Cosmetic changes

Revision 730 - Directory Listing
Modified Tue May 17 17:16:53 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/R
Adding logical sparse matrix methods

Revision 729 - Directory Listing
Modified Tue May 17 17:16:39 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/R
Adding logical sparse matrix methods

Revision 723 - Directory Listing
Modified Tue May 10 01:42:05 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/R
More logical sparse matrix methods

Revision 720 - Directory Listing
Modified Mon May 9 01:32:44 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/R
Methods for logical general sparse matrices

Revision 718 - Directory Listing
Modified Mon May 9 01:24:35 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/R
Getting ready for a release

Revision 714 - Directory Listing
Modified Fri May 6 23:52:34 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/R
Added colSums and friends for dgeMatrix class

Revision 703 - Directory Listing
Modified Thu Apr 21 22:00:04 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/R
Replace identical(TRUE, ...) by isTRUE(...)

Revision 702 - Directory Listing
Modified Thu Apr 21 13:00:36 2005 UTC (12 years, 7 months ago) by bates
Original Path: pkg/R
Moving Doxyfile

Revision 699 - Directory Listing
Modified Mon Apr 18 20:20:46 2005 UTC (12 years, 8 months ago) by maechler
Original Path: pkg/R
comment out "integer" methods: those are now part of "numeric"

Revision 698 - Directory Listing
Modified Mon Apr 18 20:20:04 2005 UTC (12 years, 8 months ago) by maechler
Original Path: pkg/R
numeric x dgeMatrix : for solve etc; semi-activate the as.Matrix() idea

Revision 693 - Directory Listing
Modified Mon Apr 18 17:02:26 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/R
In R-2.1.0 matrix dispatches before integer so always set storage.mode on objects of class "matrix"

Revision 692 - Directory Listing
Modified Mon Apr 18 14:34:33 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/R
Release 0.95-6

Revision 687 - Directory Listing
Modified Fri Apr 1 07:36:09 2005 UTC (12 years, 8 months ago) by maechler
Original Path: pkg/R
"[" and show() methods for sparse matrices => RFC

Revision 686 - Directory Listing
Modified Thu Mar 31 21:19:35 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/R
Create "fallback" methods for any kind of numeric, dense matrix

Revision 684 - Directory Listing
Modified Thu Mar 31 17:56:46 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/R
Multiplication operations for sparseMatrix and ddenseMatrix

Revision 683 - Directory Listing
Modified Thu Mar 31 17:10:16 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/R
Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class

Revision 677 - Directory Listing
Modified Mon Mar 28 14:03:32 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/R
Added dgRMatrix methods and documentation

Revision 676 - Directory Listing
Modified Sat Mar 26 15:59:18 2005 UTC (12 years, 8 months ago) by maechler
Original Path: pkg/R
+ virtual "sparseMatrix" classes

Revision 666 - Directory Listing
Modified Thu Mar 24 13:50:16 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/R
Add replace functions to calls to setIs for symmetric to positive definite

Revision 665 - Directory Listing
Modified Thu Mar 24 13:06:09 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/R
Removing the ssclme and sscCrosstab classes

Revision 664 - Directory Listing
Modified Thu Mar 24 13:00:09 2005 UTC (12 years, 8 months ago) by maechler
Original Path: pkg/R
make virtual classes "VIRTUAL"

Revision 662 - Directory Listing
Modified Wed Mar 23 17:34:59 2005 UTC (12 years, 8 months ago) by bates
Original Path: pkg/R
Moving all ssclme-related R code to the lme4 package

Revision 658 - Directory Listing
Modified Thu Mar 17 17:52:06 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
+ as.matrix() + unname() method

Revision 657 - Directory Listing
Modified Wed Mar 16 16:57:52 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
more %*% and setAs(); tests too

Revision 656 - Directory Listing
Modified Wed Mar 16 16:55:32 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
rename s/M.n/M.v/ etc

Revision 654 - Directory Listing
Modified Wed Mar 16 16:18:33 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Generalize matrix multiplication and solve methods

Revision 653 - Directory Listing
Modified Wed Mar 16 16:17:43 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
include permutation in expand method for LU

Revision 652 - Directory Listing
Modified Wed Mar 16 01:08:36 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Updates to multiplication and other methods

Revision 650 - Directory Listing
Modified Tue Mar 15 01:53:58 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Correct the coercion to matrix

Revision 643 - Directory Listing
Modified Tue Mar 15 00:50:48 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Adding many methods for the dsyMatrix class

Revision 642 - Directory Listing
Modified Tue Mar 15 00:49:32 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
'unpack' methods

Revision 641 - Directory Listing
Modified Tue Mar 15 00:48:34 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Clean up the 't' method

Revision 638 - Directory Listing
Modified Tue Mar 15 00:43:21 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
permutation matrix class

Revision 635 - Directory Listing
Modified Tue Mar 15 00:40:26 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Coercions and methods for dppMatrix and dspMatrix classes

Revision 632 - Directory Listing
Modified Sun Mar 13 21:00:53 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
mv some to new Auxiliaries file (early in alphabetic sorting!)

Revision 631 - Directory Listing
Modified Sun Mar 13 04:34:52 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Add BunchKaufman factorization

Revision 628 - Directory Listing
Modified Thu Mar 10 17:57:47 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
more  %*% methods; some dimnames in C (untested); checks extended

Revision 619 - Directory Listing
Modified Sat Mar 5 21:21:31 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
comments and cosmetic, setAs(.) first

Revision 618 - Directory Listing
Modified Sat Mar 5 21:20:42 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
extended show Method, testing for "Matrix"; rather "ddenseMatrix" -> "matrix"

Revision 617 - Directory Listing
Modified Sat Mar 5 21:19:13 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
+ setAs(*, "matrix")

Revision 616 - Directory Listing
Modified Sat Mar 5 21:17:40 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
+ 2 crossprod methods

Revision 615 - Directory Listing
Modified Sat Mar 5 21:17:04 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
L <-> U for transpose

Revision 610 - Directory Listing
Modified Fri Mar 4 17:34:19 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
comments only

Revision 609 - Directory Listing
Modified Fri Mar 4 17:34:03 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
add more %*% methods

Revision 608 - Directory Listing
Modified Fri Mar 4 17:33:29 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
- move dim, dimnames, dimnames<-  methods to "Matrix" 
- add more %*% methods

Revision 607 - Directory Listing
Modified Fri Mar 4 17:33:03 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
- move dim, dimnames, dimnames<-  methods from "dgeMatrix" to here
- setAs(* , to = "matrix")

Revision 606 - Directory Listing
Modified Fri Mar 4 17:29:37 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
add "dMatrix" group methods and doc file

Revision 603 - Directory Listing
Modified Fri Mar 4 12:53:01 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Define %*% method for dtpMatrix and matrix properly

Revision 597 - Directory Listing
Modified Thu Mar 3 19:58:59 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Methods and coercions for the dtpMatrix class

Revision 593 - Directory Listing
Modified Thu Mar 3 05:17:32 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Remove pdfactor class

Revision 589 - Directory Listing
Modified Wed Mar 2 19:53:53 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
more coercions

Revision 583 - Directory Listing
Modified Tue Mar 1 11:42:12 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
dgCMatrix: needs explicit "dim" method (should not be needed!)

Revision 579 - Directory Listing
Modified Sun Feb 27 00:04:16 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
dimnames(), "dimnames() <-", better t(), etc

Revision 574 - Directory Listing
Modified Sat Feb 26 18:06:32 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
cosmetic

Revision 573 - Directory Listing
Modified Sat Feb 26 18:06:08 2005 UTC (12 years, 9 months ago) by maechler
Original Path: pkg/R
more group methods and testing them

Revision 561 - Directory Listing
Modified Fri Feb 18 19:24:43 2005 UTC (12 years, 9 months ago) by bates
Original Path: pkg/R
Release 0.95-1

Revision 557 - Directory Listing
Modified Thu Feb 17 01:18:02 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
Coercions and methods for the dsTMatrix class

Revision 552 - Directory Listing
Modified Tue Feb 15 23:39:40 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
triangular, triplet sparse matrices

Revision 542 - Directory Listing
Modified Thu Feb 10 17:30:10 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
"Arith" group methods work!

Revision 541 - Directory Listing
Modified Thu Feb 10 14:36:45 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
oops!

Revision 540 - Directory Listing
Modified Thu Feb 10 14:32:59 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
more "Done"

Revision 538 - Directory Listing
Modified Thu Feb 10 13:50:27 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
add @Dimnames (-> new "mm")

Revision 536 - Directory Listing
Modified Thu Feb 10 08:15:12 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
rearranging utility functions in the C code

Revision 523 - Directory Listing
Modified Mon Feb 7 09:25:50 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
stop() for error()

Revision 521 - Directory Listing
Modified Sat Feb 5 17:04:56 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
small update

Revision 513 - Directory Listing
Modified Fri Feb 4 23:46:08 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
require() is not needed; ddense.. for "dsp"; cosmetic

Revision 512 - Directory Listing
Modified Fri Feb 4 23:45:12 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
better show(); using new option "max.print"

Revision 510 - Directory Listing
Modified Fri Feb 4 23:36:17 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
dimnames?

Revision 499 - Directory Listing
Modified Fri Feb 4 18:16:32 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
- wrap line
- if(.) style in as.Matrix()

Revision 498 - Directory Listing
Modified Fri Feb 4 18:15:54 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
cosmetic

Revision 495 - Directory Listing
Modified Thu Feb 3 18:48:31 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
Initial implementation of the Schur generic

Revision 494 - Directory Listing
Modified Thu Feb 3 18:47:41 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
Cleanup

Revision 492 - Directory Listing
Modified Thu Feb 3 14:24:03 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
Getting package to pass CMD check

Revision 489 - Directory Listing
Modified Wed Feb 2 19:12:03 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
renaming and rearranging classes

Revision 483 - Directory Listing
Modified Wed Feb 2 16:11:21 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
renaming and rearranging classes

Revision 482 - Directory Listing
Modified Wed Feb 2 15:37:31 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
renaming and rearranging classes

Revision 477 - Directory Listing
Modified Wed Feb 2 14:14:59 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
Renaming and reorganizing classes

Revision 476 - Directory Listing
Modified Wed Feb 2 11:51:24 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
Change name of slot from factorization to factors

Revision 475 - Directory Listing
Modified Tue Feb 1 14:44:06 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
Martin`s cosmetics

Revision 474 - Directory Listing
Modified Tue Feb 1 14:41:24 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
Hilbert(0)

Revision 471 - Directory Listing
Modified Mon Jan 31 21:17:57 2005 UTC (12 years, 10 months ago) by maechler
Original Path: pkg/R
as.Matrix() shorter; cosmetic

Revision 461 - Directory Listing
Modified Sat Jan 29 14:09:38 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
Add expm function

Revision 451 - Directory Listing
Modified Sun Jan 23 10:05:53 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
New coercion method for cscBlocked objects

Revision 448 - Directory Listing
Modified Fri Jan 21 21:59:45 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
Release 0.8-23

Revision 440 - Directory Listing
Modified Wed Jan 19 11:21:28 2005 UTC (12 years, 10 months ago) by bates
Original Path: pkg/R
Remove Linv slot in lmer class

Revision 436 - Directory Listing
Modified Mon Jan 17 12:46:13 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/R
Add slots to lmer class

Revision 433 - Directory Listing
Modified Thu Jan 13 19:35:19 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/R
Add the bVar slot to the lmer object

Revision 419 - Directory Listing
Modified Mon Jan 3 19:21:18 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/R
Change to the lmer representation

Revision 417 - Directory Listing
Modified Mon Jan 3 19:14:22 2005 UTC (12 years, 11 months ago) by bates
Original Path: pkg/R
Change to the lmer representation

Revision 410 - Directory Listing
Modified Tue Dec 28 14:51:42 2004 UTC (12 years, 11 months ago) by bates
Original Path: pkg/R
Working on the lmer classes

Revision 391 - Directory Listing
Modified Tue Dec 14 20:00:15 2004 UTC (13 years ago) by bates
Original Path: pkg/R
Add a coercion for tripletMatrix to matrix

Revision 353 - Directory Listing
Modified Sat Nov 27 01:43:15 2004 UTC (13 years ago) by bates
Original Path: pkg/R
Make factor reordering for bCrosstab optional

Revision 349 - Directory Listing
Modified Tue Nov 23 15:39:23 2004 UTC (13 years ago) by bates
Original Path: pkg/R
Change name of blocked/blocked crosstabulation to blocked crosstabulation

Revision 348 - Directory Listing
Modified Tue Nov 23 15:38:31 2004 UTC (13 years ago) by bates
Original Path: pkg/R
add blocked crosstabulations

Revision 337 - Directory Listing
Modified Fri Nov 12 21:13:59 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/R
Add addition method

Revision 336 - Directory Listing
Modified Fri Nov 12 21:13:40 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/R
Add tcrossprod method

Revision 335 - Directory Listing
Modified Fri Nov 12 21:12:54 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/R
Add cscBlocked class

Revision 334 - Directory Listing
Modified Fri Nov 12 21:11:45 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/R
Add generics

Revision 333 - Directory Listing
Modified Fri Nov 12 21:10:17 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/R
Add classes

Revision 325 - Directory Listing
Modified Sat Nov 6 18:03:00 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/R
Add blocked/blocked cross-tabulation class

Revision 324 - Directory Listing
Modified Sat Nov 6 18:02:01 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/R
Cosmetic changes

Revision 302 - Directory Listing
Modified Wed Oct 27 21:32:37 2004 UTC (13 years, 1 month ago) by bates
Original Path: pkg/R
Remove PACKAGE="Matrix" in .Call

Revision 296 - Directory Listing
Modified Mon Oct 4 17:13:29 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/R
Add registration of .Call functions

Revision 291 - Directory Listing
Modified Sun Oct 3 21:51:33 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/R
Release 0.8-15

Revision 290 - Directory Listing
Modified Sat Oct 2 19:22:24 2004 UTC (13 years, 2 months ago) by deepayan
Original Path: pkg/R
fixed minor bug in panel function

Revision 283 - Directory Listing
Modified Sat Oct 2 17:05:34 2004 UTC (13 years, 2 months ago) by bates
Original Path: pkg/R
check for lattice package in image methods

Revision 279 - Directory Listing
Modified Sat Sep 11 14:40:25 2004 UTC (13 years, 3 months ago) by deepayan
Original Path: pkg/R
fixed image method

Revision 272 - Directory Listing
Modified Thu Sep 2 23:14:00 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/R
Add cscBlocked, tweak lmeRep

Revision 268 - Directory Listing
Modified Tue Aug 31 19:13:33 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/R
New version

Revision 263 - Directory Listing
Modified Thu Aug 26 16:01:35 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/R
extending lmeRep to multiple nested grouping factors

Revision 257 - Directory Listing
Modified Tue Aug 24 02:08:08 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/R
Remove taucs, add lmeRep, new release

Revision 255 - Directory Listing
Modified Fri Aug 20 16:27:15 2004 UTC (13 years, 3 months ago) by bates
Original Path: pkg/R
Add the lmeRep class

Revision 254 - Directory Listing
Modified Thu Aug 19 15:20:27 2004 UTC (13 years, 3 months ago) by deepayan
Original Path: pkg/R
fixed problem in image method when not all rows and columns had at least one entry

Revision 247 - Directory Listing
Modified Mon Jul 12 17:41:57 2004 UTC (13 years, 5 months ago) by bates
Original Path: pkg/R
Combine ssclme_coef and ssclme_coefUnc, ssclme_coefGets and ssclme_coefGetsUnc.  Reorganize gradient code in preparation for Hessian calculations.

Revision 241 - Directory Listing
Modified Wed Jul 7 18:23:11 2004 UTC (13 years, 5 months ago) by bates
Original Path: pkg/R
Remove pdMat classes

Revision 202 - Directory Listing
Modified Tue Jun 1 19:38:39 2004 UTC (13 years, 6 months ago) by bates
Original Path: pkg/R
Be more careful in calls to require

Revision 159 - Directory Listing
Modified Sun May 9 22:06:53 2004 UTC (13 years, 7 months ago) by bates
Original Path: pkg/R
Remove storage of L-inverse

Revision 92 - Directory Listing
Modified Fri Apr 16 21:18:59 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
Watch methods and exports

Revision 73 - Directory Listing
Modified Tue Apr 13 15:53:38 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
R version of fill-reducing permutation

Revision 72 - Directory Listing
Modified Mon Apr 12 22:25:55 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
added R version of groupedPerm function, corrected sscCrosstab arguments

Revision 70 - Directory Listing
Modified Mon Apr 12 12:10:01 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
Adding coercions - fixing bugs

Revision 42 - Directory Listing
Modified Tue Mar 30 23:25:17 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
image method using lattice

Revision 41 - Directory Listing
Modified Tue Mar 30 23:23:53 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
Move image method here

Revision 40 - Directory Listing
Modified Tue Mar 30 23:21:34 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
Change coersions to R code only

Revision 18 - Directory Listing
Modified Tue Mar 23 23:29:32 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
Allow unconstrained coefficients

Revision 17 - Directory Listing
Modified Tue Mar 23 23:28:51 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
Cleaning up

Revision 14 - Directory Listing
Modified Tue Mar 23 13:16:47 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
initial version

Revision 13 - Directory Listing
Modified Tue Mar 23 13:16:19 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
Add diag slot to tscMatrix

Revision 10 - Directory Listing
Added Mon Mar 22 20:20:05 2004 UTC (13 years, 8 months ago) by bates
Original Path: pkg/R
Initial import

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