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revision 848, Thu Aug 11 07:41:59 2005 UTC revision 917, Thu Sep 15 18:03:55 2005 UTC
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1    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
2    
3            * src/chm_common.h: header file required by all C sources that
4            call CHOLMOD functions.  It defines a cholmod_common structure
5            called 'c' whose address is passed as the last argument to
6            (virtually) every CHOLMOD function.
7    
8            * src/Pattern.c: Simple example of the use of CHOLMOD.
9    
10            * src/init.c: initialize and finalize the cholmod_common structure.
11    
12            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
13            LDL and CCOLAMD from the U. of Florida sparse matrix library.
14    
15    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
16    
17            * inst/test-tools.R: new file collecting the utility functions used
18                    in ./tests/*.R
19    
20            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
21            * R/Matrix.R (cbind2): methods for NULL and missing
22    
23    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
24    
25            * R/AllClass.R: new "index" class for "[" and "[<-":
26                    First cut at "symmetricMatrix" and "triangularMatrix"
27            * R/gTMatrix.R (.ind.prep): new function;
28                    Logical and character indexing now work too.
29            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
30            * tests/indexing.R: new, including *.Rout.save
31            * tests/dgTMatrix.R: new
32    
33    2005-08-29  Douglas Bates  <bates@wisc.edu>
34    
35            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
36            indicator pos not being updated.  Also enforced upper triangular
37            for symmetric case.  Need to coerce edges component of elements of
38            edge list - grr! (Why don't they define their classes cleanly?)
39    
40    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
41    
42            * R/Matrix.R:  added first "[<-" methods; not yet functional
43            * R/denseMatrix.R: dito
44            * man/Subassign-methods.Rd: new help file for these
45    
46    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
47    
48            * DESCRIPTION (Version): 0.98-6
49    
50            * R/denseMatrix.R: new file for "[" fallback methods for all dense
51            matrices.
52    
53    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
54    
55            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
56                    as( <logical>, "matrix")
57    
58            * R/pMatrix.R: coercion to "lgTMatrix"
59    
60            * R/gTMatrix.R: new virtual class to define "[" methods for.
61            * man/gTMatrix-class.Rd:
62            * General slight re-organization of where "[" methods are defined.
63              more to come.
64    
65    2005-08-18  Douglas Bates  <bates@wisc.edu>
66    
67            * DESCRIPTION (Version): 0.98-5  released to CRAN
68    
69            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
70            * .....
71    
72    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
73    
74            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
75            or glmer objects.
76    
77    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
78    
79            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
80    
81    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
82    
83            * R/HBMM.R: finish re-writing R-only code.
84    
85    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
86    
87            * man/externalFormats.Rd: move documentation for writeHB and
88            writeMM here.
89    
90            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
91            (suggested by Paul Roecker).
92    
93            * tests/validObj.R (assertError): Comment out test that is failing
94            after recent changes in r-devel.
95    
96    
97  2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>  2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
98    
99          * R/AllClass.R: intermediate virtual class "denseMatrix"          * R/AllClass.R: intermediate virtual class "denseMatrix"

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