SCM

SCM Repository

[matrix] Diff of /pkg/ChangeLog
ViewVC logotype

Diff of /pkg/ChangeLog

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 848, Thu Aug 11 07:41:59 2005 UTC revision 1346, Thu Aug 3 17:17:55 2006 UTC
# Line 1  Line 1 
1    2006-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * DESCRIPTION (Version): 0.995-13 to be released to CRAN
4    
5            * DESCRIPTION (Lazydata): no, instead of 'yes' because it fails for:
6            * data/CAex.R, inst/external/CAex_slots.rda: replacing data/CAex.rda
7            * data/KNex.R, inst/external/KNex_slots.rda: replacing data/KNex.rda
8            such that the S4 objects are always created by the current version
9            of R and 'Matrix' class definitions.
10    
11    2006-08-01  Douglas Bates  <bates@R-project.org>
12    
13            * R/lmer.R (LMEoptimize method), tests/lmer.R,
14            inst/external/test3comp.rda: Added warnings for convergence on
15            boundary and test cases.
16    
17            * src/lmer.c (mer_postVar): Modified to return the variances that
18            are marginal to the fixed effects, not conditional on them (which
19            is what the bVar slot contents represent).
20    
21    2006-07-31  Douglas Bates  <bates@R-project.org>
22    
23            * NAMESPACE, src/lmer.c, R/lmer.R (hatTrace):  Add the hatTrace
24            function which calls the C function mer_hat_trace2.
25    
26            * man/ranef.Rd: Include description of "postVar" argument and
27            producing a caterpillar plot.
28    
29    2006-07-31  Martin Maechler  <maechler@stat.math.ethz.ch>
30    
31            * NAMESPACE:    change  "correlation" to "corMatrix"
32            * R/AllClass.R: to avoid clash with S3 class in 'nlme'.
33            * R/dpoMatrix.R: dito
34            * R/lmer.R:      dito
35    
36    2006-07-28  Douglas Bates  <bates@R-project.org>
37    
38            * src/lmer.c (internal_mer_RZXinv): Split the calculation of the
39            RZXinv slot's contents into a separate internal function that can
40            be used in mer_hat_trace.
41    
42    2006-07-22  Martin Maechler  <maechler@stat.math.ethz.ch>
43    
44            * R/Matrix.R: Coercions "Matrix" -> (sparse|dense)Matrix
45            via new smart
46            * R/Auxiliaries.R (as_Csparse, as_dense, .M.shapse): new
47            utility functions.
48    
49    
50    2006-07-21  Martin Maechler  <maechler@stat.math.ethz.ch>
51    
52            * R/Csparse.R (tril, triu, band): do return *triangular* classed
53            matrices when appropriate; band() even symmetric ones.
54            (replCmat): extend to potentially all "CsparseMatrix"
55            * R/Tsparse.R (replTmat): extend to all "TsparseMatrix"; hence
56            allow subassignment for special sparse matrices.
57    
58            * R/Auxiliaries.R (as_geClass): factor out the  .M.kind() functionality
59    
60            * src/lmer.c (mer_MCMCsamp, glmer_MCMCsamp): new 'verbose'
61            argument; in glmer_*(): print only if(verbose).
62    
63            speed-optimize a few places by moving REAL(.) out of loops.
64    
65            * src/lmer.h, src/init.h, R/lmer.R:  related to above.
66    
67    2006-07-20  Martin Maechler  <maechler@stat.math.ethz.ch>
68    
69            * R/Matrix.R("["): disable ("Matrix", i = "logical", j = "missing"),
70                    since that wrongly triggers also for M[ logi , ]
71    
72            * R/denseMatrix.R: "[" methods now also work e.g. when indexing
73            a symmetric matrix that results in a non-symmetric one.
74            * R/Auxiliaries.R (as_geClass): new function used in "[" above.
75    
76            * R/dMatrix.R: make round(M) work as round(M, 0)
77    
78            * R/dgTMatrix.R (image): coordinate system and axis now use
79            1-based indices, not 0-based ones.
80    
81            * R/Tsparse.R (.ind.prep for "["): get rid of max(<empty>) warning.
82            * tests/indexing.R: test it.
83    
84            * NAMESPACE: export isSymmetric(); has been a generic in "base" for a while;
85            * man/isSymmetric-methods.Rd: and document it.
86    
87            * R/SparseM-conv.R: added coercion methods for some 'SparseM' matrices.
88            * man/SparseM-conv.Rd: docu them
89    
90            * tests/other-pkgs.R: renamed from tests/graph.R and add example
91                    for 'SparseM' conversions
92    
93    2006-07-17  Douglas Bates  <Douglas.Bates@R-project.org>
94    
95            * R/Matrix.R (head): added head() and tail() methods.
96    
97    2006-07-17  Martin Maechler  <maechler@stat.math.ethz.ch>
98    
99            * DESCRIPTION (Version): 0.995-12 released to CRAN
100    
101    2006-07-15  Martin Maechler  <maechler@stat.math.ethz.ch>
102    
103            * tests/simple.R: add check for correct dsT -> dgT coercion;
104                    add check for correct printing of symmetric sparse matrices.
105    
106            * R/Auxiliaries.R (non0ind): return *all* non-0 entry indices also
107            for sparse symmetric matrices.
108    
109            * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): do not copy the
110            diagonal twice.
111    
112    2006-07-11  Douglas Bates  <Douglas.Bates@R-project.org>
113    
114            * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): Fix a case of INTEGER
115            being applied to the x slot (detected by Brian Ripley).
116    
117    2006-07-10  Martin Maechler  <maechler@stat.math.ethz.ch>
118    
119            * src/dgCMatrix.c (dgCMatrix_validate): 'p' slot must have correct length.
120    
121            * R/Auxiliaries.R (isTriC): fix buglet (we were 1-based!)
122    
123    2006-07-08  Martin Maechler  <maechler@stat.math.ethz.ch>
124    
125            * src/lgCMatrix.c (lgCMatrix_diag): new function
126            * R/lgCMatrix.R (diag): for new method
127    
128            * R/AllClass.R (TsparseMatrix): do use Tsparse_validate
129                 ==> construction of illegal "*gTMatrix" via new() should
130                 now be much less easy:
131            * tests/Class+Meth.R: assertError() for some illegal "dgT*"
132    
133            * R/Matrix.R (Matrix): Matrix(0, nrow,ncol) now "goes sparse"
134                    directly.
135            * man/Matrix.Rd: documents it.
136    
137    2006-07-06  Douglas Bates  <bates@R-project.org>
138    
139            * src/pedigree.c (pedigree_inbreeding): Correction in
140            initialization.  This function is not currently being used and is
141            not fully tested.
142    
143            * NAMESPACE, R/{AllClass.R,lmer.R}, src/{init.c,lmer.c}:
144            Introduced the glmer class.  Added code for mcmcmsamp on glmer
145            objects.  Modified validity check on pedigree objects to account
146            for nonparallel patterns of missingness of parents.
147    
148            * man/{lmer-class.Rd,mcmcsamp.Rd}: Update documentation for glmer
149            class.
150    
151    2006-07-01  Martin Maechler  <maechler@stat.math.ethz.ch>
152    
153            * R/pMatrix.R: coercion pMatrix -> Tsparse
154    
155    2006-06-12  Douglas Bates  <bates@R-project.org>
156    
157            * DESCRIPTION (Version): 0.995-11 released to CRAN
158    
159            * R/lmer.R (mcmcsamp method): Corrected arrangments of names on
160            the output from mcmcsamp.
161    
162    2006-06-10  Douglas Bates  <bates@R-project.org>
163    
164            * R/lmer.R (simulestimate): added C code for calculating the trace
165            of the hat matrix.
166    
167    2006-06-09  Martin Maechler  <maechler@stat.math.ethz.ch>
168    
169            * R/diagMatrix.R (setAs): define coercion methods to sparse matrix
170            classes.
171            * R/sparseMatrix.R etc: multiplication of diagonal and sparse
172    
173    2006-06-08  Martin Maechler  <maechler@stat.math.ethz.ch>
174    
175            * R/dgTMatrix.R (colSums): etc. All four of
176            colSums(), rowSums(), colMeans(), rowMeans() now should work for
177            all "Matrices".
178    
179    2006-06-01  Douglas Bates  <bates@stat.wisc.edu>
180    
181            * R/lmer.R (panel.ci): Add a reference line at zero and a
182            background grid to the qqmath plot of ranef.lmer.
183    
184    2006-05-30  Douglas Bates  <bates@stat.wisc.edu>
185    
186            * R/lmer.R (expandSlash): Functions (non-exported) to allow nested
187            grouping factors to be specified in the formula as (1|foo/bar).
188    
189    2006-05-27  Douglas Bates  <bates@stat.wisc.edu>
190    
191            * R/lmer.R (findbars and others): Change check of is.numeric to
192            !is.language to resolve the bug reported by Jacob Wegelin.
193    
194            * src/pedigree.c (pedigree_inbreeding): Initial implementation of
195            code to evaluate inbreeding coefficients without calculating T,
196            based on code in Sargolzaei and Iwaisaki's paper.
197    
198    2006-05-27  Douglas Bates  <bates@stat.wisc.edu>
199    
200            * R/{lmer.R,AllGeneric.R}, src/{init.c,lmer.[ch]}: Added local
201            generic and mer methods for isNested and denomDF. This denomDF was
202            an attempt to emulate that in lme but I don't think that makes
203            sense.  Use the trace of the hat matrix instead.
204    
205    2006-05-17  Martin Maechler  <maechler@stat.math.ethz.ch>
206    
207            * R/sparseMatrix.R: Matrix <-> graph methods: can no longer use
208            the C code depending on a slot structure that's no longer valid.
209            * src/dgTMatrix.c: dito (also: src/init.c src/dgTMatrix.h)
210    
211    
212    2006-05-17  Douglas Bates  <bates@stat.wisc.edu>
213    
214            *  R/{AllGeneric.R,Csparse.R},man/band.Rd,NAMESPACE: changed name
215            of lowerTriMatrix generic and methods to tril (also upper to triu)
216            and added a general band extractor.
217    
218    2006-05-16  Douglas Bates  <bates@stat.wisc.edu>
219    
220            * R/pedigree.R (pedigree): Replace sire and dam values outside the
221            allowable range with NAs. Added a corresponding check in the
222            validity check for the pedigree class.
223    
224            * R/[CT]sparse.R ([t]crossprod): The result of single-argument
225            crossprod methods now inherits from symmetricMatrix.
226    
227    2006-05-15  Douglas Bates  <bates@stat.wisc.edu>
228    
229            * R/AllGeneric.R (lowerTriMatrix): Added (but did not export)
230            generics lowerTriMatrix and upperTriMatrix along with methods for
231            the Csparse virtual class.  Also added a C function Csparse_band
232            that implements these methods by calling cholmod_band.
233    
234    2006-05-15  Martin Maechler  <maechler@stat.math.ethz.ch>
235    
236            * R/Tsparse.R ("["): column or row subsetting; @Dimnames[k] got
237            erased when it was NULL.  This led to invalid subselections!
238    
239    2006-04-25  Douglas Bates  <bates@stat.wisc.edu>
240    
241            * R/dtCMatrix.R: avoid coercion of dtCMatrix object to dgCMatrix
242            in method for "t" so as not to lose the unit diagonal property.
243    
244    2006-04-19  Douglas Bates  <bates@stat.wisc.edu>
245    
246            * R/lmer.R, R/AllGeneric.R, NAMESPACE: Remove the postVar generic
247            and methods.  This is now an option to the ranef method for the
248            mer class.
249    
250            * src/cs_utils.c: Ensure that the nz component is -1 for a
251            compressed column-oriented matrix.  Minor formatting cleanup.
252    
253            * man/lmer-class.Rd: Document the qqmath method for ranef.lmer
254            objects.
255    
256    2006-04-19  Martin Maechler  <maechler@stat.math.ethz.ch>
257    
258            * R/Auxiliaries.R (diagU2N): new for the solve() methods in
259            * R/dtCMatrix.R: where dgC -> dgT coercion now preserves diag = "U".
260    
261    2006-04-15  Douglas Bates  <bates@stat.wisc.edu>
262    
263            * src/cs.[ch],src/cs_utils.[ch] : Added Tim Davis' CSparse library
264            in cs.[ch] and utilities to interface to that code in cs_utils.[ch].
265    
266            * R/dtCMatrix.R, src/dtCMatrix.[ch] : CSparse-based solve methods
267            for the dtCMatrix class.
268    
269    2006-04-12  Douglas Bates  <bates@stat.wisc.edu>
270    
271            * R/pedigree.R, R/AllClass.R, NAMESPACE: added a pedigree class
272            and methods for it.
273    
274    2006-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
275    
276            * R/dgCMatrix.R: add  storage.mode(.) <- "double" for "matrix"
277            arguments, such that M %*% 1:6 now works
278            * Tests/matprod.R: test the above
279    
280    2006-04-03  Douglas Bates  <bates@stat.wisc.edu>
281    
282            * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
283            the ranef.lmer class.
284    
285            * R/AllClass.R, NAMESPACE, R/lmer.R: Added a postVar generic and
286            methods to extract the posterior variances from the bVar slot.
287    
288    2006-03-30  Martin Maechler  <maechler@stat.math.ethz.ch>
289    
290            * R/dtCMatrix.R: allow coercion from  dgC* to triangular (dtC*)
291            * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
292    
293            * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
294            * tests/simple: (extended)
295    
296            * R/sparseMatrix.R (isTriangular): now using much improved
297            * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
298    
299    2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
300    
301            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
302            (problem report from Franklin Parlamis).  This should be done
303            generally.
304    
305    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
306    
307            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
308            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
309            update the plot methods.
310    
311    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
312    
313            * R/lmer.R (resid and ranef methods):  Added methods for the
314            "residuals" and "resid" generic but only for linear mixed model
315            fits.  Changed the ranef method to return a list of data frames so
316            that the plot methods now work.
317    
318    2006-03-16  Douglas Bates  <bates@bates2>
319    
320            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
321            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
322    
323            * DESCRIPTION (Date): New release
324    
325    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
326    
327            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
328    
329            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
330            * man/KNex.Rd: and other help files
331            * tests/*.R: several ones needed adaption
332            * inst/doc/Comparisons.Rnw: dito
333    
334    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
335    
336            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
337    
338            * tests/indexing.R: tests for new [<- methods for sparse matrices.
339    
340    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
341    
342            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
343    
344            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
345    
346    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
347    
348            * R/dMatrix.R: enable things like  M [ M < 10 ]
349            * R/dgeMatrix.R: implement it
350    
351    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
352    
353            * R/AllClass.R: define "summary.mer" and "*.lmer"
354            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
355            * R/lmer.R (show): now works with summary()
356    
357    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
358    
359            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
360            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
361                    support the above
362    
363    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
364    
365            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
366            Use glmFit$prior.weights for weights in a glmm.
367            Allow an option usePQL = FALSE to skip the PQL steps for the
368            Laplace method (and, in time, the AGQ method).
369    
370            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
371            into a separate function internal_mer_Xfactor to be able to call
372            it from internal_bhat.
373    
374    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
375    
376            * tests/Class+Meth.R (tstMatrixClass): function for much better
377            testing; now again of all actual classes.
378    
379            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
380                    use macros and define make_d_matrix_* and make_i_matrix_*
381                    where _i_ is for the ldense routines:
382    
383            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
384            * src/ldense.c (lsyMatrix_as_lgeMatrix):
385    
386            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
387    
388    
389    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
390    
391            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
392                    many different kinds of matrices.
393            * R/*.R: quite a few new methods were needed for R CMD check with
394                    new Matrix().  Very good for users playing around.
395    
396    
397    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
398    
399            * src/dgeMatrix.c (dMatrix_validate): new
400            * src/Mutils.c (dense_nonpacked_validate): new
401    
402            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
403    
404    
405    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
406    
407            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
408    
409    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
410    
411            * DESCRIPTION (Version): 0.99-6 released to CRAN
412    
413            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
414            segfault in cases with multiple non-nested grouping factors.
415    
416    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
417    
418            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
419                    (Depends): also on 'utils'
420    
421            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
422            * R/diagMatrix.R (Diagonal): constructor and methods for
423            diagonal matrices
424    
425            * R/ltTMatrix.R: new "minimal methods"
426    
427    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
428    
429            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
430            all methods (and help files).
431    
432    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
433    
434            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
435                    for case (dimn.  op  no_dimn.)
436    
437    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
438    
439            * DESCRIPTION (Version): 0.99-2  released to CRAN
440    
441    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
442    
443            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
444            by Julian Faraway.
445    
446    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
447    
448            * R/Auxiliaries.R (try_as): new utility
449            * R/sparseMatrix.R: use try_as() in coercion to original class
450    
451    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
452    
453            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
454    
455    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
456    
457            * R/Auxiliaries.R (dimNamesCheck): added
458    
459            * R/Matrix.R (as.array), (as.vector): new
460    
461    2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
462    
463            * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
464                    default.
465            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
466                    "pMatrix" now contains "sparseMatrix"
467    
468    2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
469    
470            * tests/Class+Meth.R: new tests; t(t(m)) == m
471    
472            * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
473    
474            * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
475            * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
476    
477            * R/dspMatrix.R: typo in "t" method
478    
479    2005-09-18  Douglas Bates  <bates@wisc.edu>
480    
481            * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
482            * R/Tsparse.R: instead of R/gTMatrix.R
483            * R/Csparse.R: new
484            * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
485            * src/Tsparse.c: new; many trivial methods calling cholmod_()
486            * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
487                            via cholmod
488    
489    2005-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
490    
491            * R/Auxiliaries.R (non0ind): new function using new C code
492            * src/dgCMatrix.c (compressed_non_0_ij): new utility
493    
494    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
495    
496            * src/chm_common.h: header file required by all C sources that
497            call CHOLMOD functions.  It defines a cholmod_common structure
498            called 'c' whose address is passed as the last argument to
499            (virtually) every CHOLMOD function.
500    
501            * src/Pattern.c: Simple example of the use of CHOLMOD.
502    
503            * src/init.c: initialize and finalize the cholmod_common structure.
504    
505            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
506            LDL and CCOLAMD from the U. of Florida sparse matrix library.
507    
508    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
509    
510            * inst/test-tools.R: new file collecting the utility functions used
511                    in ./tests/*.R
512    
513            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
514            * R/Matrix.R (cbind2): methods for NULL and missing
515    
516    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
517    
518            * R/AllClass.R: new "index" class for "[" and "[<-":
519                    First cut at "symmetricMatrix" and "triangularMatrix"
520            * R/gTMatrix.R (.ind.prep): new function;
521                    Logical and character indexing now work too.
522            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
523            * tests/indexing.R: new, including *.Rout.save
524            * tests/dgTMatrix.R: new
525    
526    2005-08-29  Douglas Bates  <bates@wisc.edu>
527    
528            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
529            indicator pos not being updated.  Also enforced upper triangular
530            for symmetric case.  Need to coerce edges component of elements of
531            edge list - grr! (Why don't they define their classes cleanly?)
532    
533    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
534    
535            * R/Matrix.R:  added first "[<-" methods; not yet functional
536            * R/denseMatrix.R: dito
537            * man/Subassign-methods.Rd: new help file for these
538    
539    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
540    
541            * DESCRIPTION (Version): 0.98-6
542    
543            * R/denseMatrix.R: new file for "[" fallback methods for all dense
544            matrices.
545    
546    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
547    
548            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
549                    as( <logical>, "matrix")
550    
551            * R/pMatrix.R: coercion to "lgTMatrix"
552    
553            * R/gTMatrix.R: new virtual class to define "[" methods for.
554            * man/gTMatrix-class.Rd:
555            * General slight re-organization of where "[" methods are defined.
556              more to come.
557    
558    2005-08-18  Douglas Bates  <bates@wisc.edu>
559    
560            * DESCRIPTION (Version): 0.98-5  released to CRAN
561    
562            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
563            * .....
564    
565    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
566    
567            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
568            or glmer objects.
569    
570    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
571    
572            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
573    
574    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
575    
576            * R/HBMM.R: finish re-writing R-only code.
577    
578    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
579    
580            * man/externalFormats.Rd: move documentation for writeHB and
581            writeMM here.
582    
583            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
584            (suggested by Paul Roecker).
585    
586            * tests/validObj.R (assertError): Comment out test that is failing
587            after recent changes in r-devel.
588    
589    
590  2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>  2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
591    
592          * R/AllClass.R: intermediate virtual class "denseMatrix"          * R/AllClass.R: intermediate virtual class "denseMatrix"

Legend:
Removed from v.848  
changed lines
  Added in v.1346

root@r-forge.r-project.org
ViewVC Help
Powered by ViewVC 1.0.0  
Thanks to:
Vienna University of Economics and Business Powered By FusionForge