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revision 726, Thu May 12 14:59:04 2005 UTC revision 1243, Sun Apr 9 00:02:26 2006 UTC
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1  2005-05-11  Douglas Bates  <bates@bates1-home>  2006-04-03  Douglas Bates  <bates@dyn-51-232.uwnet.wisc.edu>
2    
3            * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
4            the ranef.lmer class.
5    
6            * R/AllClass.R, NAMESPACE, R/lmer.R: Added a postVar generic and
7            methods to extract the posterior variances from the bVar slot.
8    
9    2006-03-30  Martin Maechler  <maechler@stat.math.ethz.ch>
10    
11            * R/dtCMatrix.R: allow coercion from  dgC* to triangular (dtC*)
12            * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
13    
14            * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
15            * tests/simple: (extended)
16    
17            * R/sparseMatrix.R (isTriangular): now using much improved
18            * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
19    
20    2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
21    
22            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
23            (problem report from Franklin Parlamis).  This should be done
24            generally.
25    
26    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
27    
28            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
29            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
30            update the plot methods.
31    
32    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
33    
34            * R/lmer.R (resid and ranef methods):  Added methods for the
35            "residuals" and "resid" generic but only for linear mixed model
36            fits.  Changed the ranef method to return a list of data frames so
37            that the plot methods now work.
38    
39    2006-03-16  Douglas Bates  <bates@bates2>
40    
41            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
42            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
43    
44            * DESCRIPTION (Date): New release
45    
46    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
47    
48            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
49    
50            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
51            * man/KNex.Rd: and other help files
52            * tests/*.R: several ones needed adaption
53            * inst/doc/Comparisons.Rnw: dito
54    
55    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
56    
57            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
58    
59            * tests/indexing.R: tests for new [<- methods for sparse matrices.
60    
61    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
62    
63            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
64    
65            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
66    
67    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
68    
69            * R/dMatrix.R: enable things like  M [ M < 10 ]
70            * R/dgeMatrix.R: implement it
71    
72    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
73    
74            * R/AllClass.R: define "summary.mer" and "*.lmer"
75            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
76            * R/lmer.R (show): now works with summary()
77    
78    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
79    
80            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
81            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
82                    support the above
83    
84    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
85    
86            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
87            Use glmFit$prior.weights for weights in a glmm.
88            Allow an option usePQL = FALSE to skip the PQL steps for the
89            Laplace method (and, in time, the AGQ method).
90    
91            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
92            into a separate function internal_mer_Xfactor to be able to call
93            it from internal_bhat.
94    
95    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
96    
97            * tests/Class+Meth.R (tstMatrixClass): function for much better
98            testing; now again of all actual classes.
99    
100            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
101                    use macros and define make_d_matrix_* and make_i_matrix_*
102                    where _i_ is for the ldense routines:
103    
104            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
105            * src/ldense.c (lsyMatrix_as_lgeMatrix):
106    
107            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
108    
109    
110    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
111    
112            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
113                    many different kinds of matrices.
114            * R/*.R: quite a few new methods were needed for R CMD check with
115                    new Matrix().  Very good for users playing around.
116    
117    
118    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
119    
120            * src/dgeMatrix.c (dMatrix_validate): new
121            * src/Mutils.c (dense_nonpacked_validate): new
122    
123            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
124    
125    
126    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
127    
128            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
129    
130    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
131    
132            * DESCRIPTION (Version): 0.99-6 released to CRAN
133    
134            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
135            segfault in cases with multiple non-nested grouping factors.
136    
137    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
138    
139            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
140                    (Depends): also on 'utils'
141    
142            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
143            * R/diagMatrix.R (Diagonal): constructor and methods for
144            diagonal matrices
145    
146            * R/ltTMatrix.R: new "minimal methods"
147    
148    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
149    
150            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
151            all methods (and help files).
152    
153    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
154    
155            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
156                    for case (dimn.  op  no_dimn.)
157    
158    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
159    
160            * DESCRIPTION (Version): 0.99-2  released to CRAN
161    
162    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
163    
164            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
165            by Julian Faraway.
166    
167    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
168    
169            * R/Auxiliaries.R (try_as): new utility
170            * R/sparseMatrix.R: use try_as() in coercion to original class
171    
172    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
173    
174            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
175    
176    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
177    
178            * R/Auxiliaries.R (dimNamesCheck): added
179    
180            * R/Matrix.R (as.array), (as.vector): new
181    
182    2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
183    
184            * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
185                    default.
186            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
187                    "pMatrix" now contains "sparseMatrix"
188    
189    2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
190    
191            * tests/Class+Meth.R: new tests; t(t(m)) == m
192    
193            * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
194    
195            * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
196            * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
197    
198            * R/dspMatrix.R: typo in "t" method
199    
200    2005-09-18  Douglas Bates  <bates@wisc.edu>
201    
202            * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
203            * R/Tsparse.R: instead of R/gTMatrix.R
204            * R/Csparse.R: new
205            * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
206            * src/Tsparse.c: new; many trivial methods calling cholmod_()
207            * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
208                            via cholmod
209    
210    2005-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
211    
212            * R/Auxiliaries.R (non0ind): new function using new C code
213            * src/dgCMatrix.c (compressed_non_0_ij): new utility
214    
215    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
216    
217            * src/chm_common.h: header file required by all C sources that
218            call CHOLMOD functions.  It defines a cholmod_common structure
219            called 'c' whose address is passed as the last argument to
220            (virtually) every CHOLMOD function.
221    
222            * src/Pattern.c: Simple example of the use of CHOLMOD.
223    
224            * src/init.c: initialize and finalize the cholmod_common structure.
225    
226            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
227            LDL and CCOLAMD from the U. of Florida sparse matrix library.
228    
229    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
230    
231            * inst/test-tools.R: new file collecting the utility functions used
232                    in ./tests/*.R
233    
234            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
235            * R/Matrix.R (cbind2): methods for NULL and missing
236    
237    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
238    
239            * R/AllClass.R: new "index" class for "[" and "[<-":
240                    First cut at "symmetricMatrix" and "triangularMatrix"
241            * R/gTMatrix.R (.ind.prep): new function;
242                    Logical and character indexing now work too.
243            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
244            * tests/indexing.R: new, including *.Rout.save
245            * tests/dgTMatrix.R: new
246    
247    2005-08-29  Douglas Bates  <bates@wisc.edu>
248    
249            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
250            indicator pos not being updated.  Also enforced upper triangular
251            for symmetric case.  Need to coerce edges component of elements of
252            edge list - grr! (Why don't they define their classes cleanly?)
253    
254    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
255    
256            * R/Matrix.R:  added first "[<-" methods; not yet functional
257            * R/denseMatrix.R: dito
258            * man/Subassign-methods.Rd: new help file for these
259    
260    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
261    
262            * DESCRIPTION (Version): 0.98-6
263    
264            * R/denseMatrix.R: new file for "[" fallback methods for all dense
265            matrices.
266    
267    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
268    
269            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
270                    as( <logical>, "matrix")
271    
272            * R/pMatrix.R: coercion to "lgTMatrix"
273    
274            * R/gTMatrix.R: new virtual class to define "[" methods for.
275            * man/gTMatrix-class.Rd:
276            * General slight re-organization of where "[" methods are defined.
277              more to come.
278    
279    2005-08-18  Douglas Bates  <bates@wisc.edu>
280    
281            * DESCRIPTION (Version): 0.98-5  released to CRAN
282    
283            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
284            * .....
285    
286    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
287    
288            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
289            or glmer objects.
290    
291    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
292    
293            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
294    
295    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
296    
297            * R/HBMM.R: finish re-writing R-only code.
298    
299    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
300    
301            * man/externalFormats.Rd: move documentation for writeHB and
302            writeMM here.
303    
304            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
305            (suggested by Paul Roecker).
306    
307            * tests/validObj.R (assertError): Comment out test that is failing
308            after recent changes in r-devel.
309    
310    
311    2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
312    
313            * R/AllClass.R: intermediate virtual class "denseMatrix"
314            * man/denseMatrix-class.Rd
315            * NAMESPACE: export it, and also export
316            * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
317    
318    2005-08-10  Douglas Bates  <bates@wisc.edu>
319    
320            * DESCRIPTION (Version): 0.98-3 to CRAN
321    
322            * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
323            matrix_solve code (which was really, really wrong).
324    
325    2005-08-07  Douglas Bates  <bates@wisc.edu>
326    
327            * DESCRIPTION (Version): 0.98-2
328    
329            * R/HBMM.R (readHB), (readMM): read Matrix Market formats
330    
331            * R/lmer.R (abbrvNms): new
332            * R/lmer.R (mcmcsamp): allow transformed parameters
333            * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
334            for the Harwell-Boeing and the MatrixMarket formats.
335    
336    2005-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
337    
338            * man/dtrMatrix-class.Rd: add examples
339            * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
340    
341            * TODO: note the dtpMatrix (docu) bug
342    
343            * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
344            in order to ensure that new as.matrix() is used by old functions,
345            e.g., svd(), qr(), eigen(), dist(),..;
346                  apply(), also matplot() or pairs().
347    
348    
349    2005-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
350    
351            * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
352              add comments about 'control' / lmerControl() arguments
353    
354    2005-07-27  Douglas Bates  <bates@wisc.edu>
355    
356            * man/sleepstudy.Rd: Added the sleep data set.
357            * DESCRIPTION (Version): 0.98-1  released to CRAN
358    
359    2005-07-12  Douglas Bates  <bates@wisc.edu>
360            * man/sleepstudy.Rd: Added the sleep data set.
361    
362            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
363            .Call calls that were producing spurious output.
364    
365    2005-07-05  Douglas Bates  <bates@wisc.edu>
366    
367            * R/lmer.R (lmer): stored updated variance component estimates in
368            mer object for the generalized model.  (Bug reported by Renaud
369            Lancelot).
370    
371    2005-07-03  Douglas Bates  <bates@wisc.edu>
372    
373            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
374            unidimensional case.
375    
376    2005-06-08  Douglas Bates  <bates@wisc.edu>
377    
378            * DESCRIPTION (Version): 0.96-1
379    
380            * moved  lmer-class' R and C code moved from lme4 to here
381    
382    2005-06-04  Douglas Bates  <bates@wisc.edu>
383    
384            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
385            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
386    
387    2005-06-02  Douglas Bates  <bates@wisc.edu>
388    
389            * src/Makefile.win: Forgot to update this when Makefile changed.
390    
391    2005-05-11  Douglas Bates  <bates@wisc.edu>
392    
393          * src/dgCMatrix.c (csc_transpose): Simplified function fixing a          * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
394          bug reported by Kurt Hornik and Michael Hahsler.          bug reported by Kurt Hornik and Michael Hahsler.
395    
396  2005-05-10  Douglas Bates  <bates@bates1-home>  2005-05-10  Douglas Bates  <bates@wisc.edu>
397    
398          * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for          * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
399          logical sparse matrices.  These will also be used in the symbolic          logical sparse matrices.  These will also be used in the symbolic
# Line 12  Line 402 
402          * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions          * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
403          of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr          of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
404    
405  2005-05-06  Douglas Bates  <bates@bates1-home>  2005-05-06  Douglas Bates  <bates@wisc.edu>
406    
407          * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of          * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
408          colMeans, colSums, rowMeans and rowSums.          colMeans, colSums, rowMeans and rowSums.
409    
410  2005-04-18  Douglas Bates  <bates@bates1-home>  2005-04-18  Douglas Bates  <bates@wisc.edu>
411    
412          * src/lgCMatrix.[ch]: code for _validate method and stub for          * src/lgCMatrix.[ch]: code for _validate method and stub for
413          multiplication operation.          multiplication operation.
# Line 30  Line 420 
420    
421          * src/{many files}: Tighten code by using ALLOC_SLOT.          * src/{many files}: Tighten code by using ALLOC_SLOT.
422    
423  2005-04-15  Douglas Bates  <bates@bates1-home>  2005-04-15  Douglas Bates  <bates@wisc.edu>
424    
425          * R/AllClass.R: Add lgTMatrix and lgCMatrix classes          * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
426    
427          * DESCRIPTION: Eliminate import of stats.          * DESCRIPTION: Eliminate import of stats.
428    
429    
430  2005-04-06  Douglas Bates  <bates@bates1-home>  2005-04-06  Douglas Bates  <bates@wisc.edu>
431    
432          * R/AllClass.R : add logical sparse matrix classes          * R/AllClass.R : add logical sparse matrix classes
433    
# Line 46  Line 436 
436          * R/dgTMatrix.R: add "[" method for triplet matrices          * R/dgTMatrix.R: add "[" method for triplet matrices
437          * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse          * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
438    
439  2005-03-31  Douglas Bates  <bates@bates1-home>  2005-03-31  Douglas Bates  <bates@wisc.edu>
440    
441          * DESCRIPTION (Version): release 0.95-5 to CRAN          * DESCRIPTION (Version): release 0.95-5 to CRAN
442    
# Line 72  Line 462 
462          * tests/dpoMatrix.R: tests should now be less platform dependent;          * tests/dpoMatrix.R: tests should now be less platform dependent;
463            also run for R 2.1.0; using as.matrix()            also run for R 2.1.0; using as.matrix()
464    
465  2005-03-15  Douglas Bates  <bates@bates1-home>  2005-03-15  Douglas Bates  <bates@wisc.edu>
466    
467          * R/pMatrix.R: "pMatrix" class added          * R/pMatrix.R: "pMatrix" class added
468          * ....          * ....
469    
470  2005-03-14  Douglas Bates  <bates@bates1-home>  2005-03-14  Douglas Bates  <bates@wisc.edu>
471    
472          * R/dtpMatrix.R: Add unpack method and an example.          * R/dtpMatrix.R: Add unpack method and an example.
473    
# Line 92  Line 482 
482            crossprod() and "%*%" methods added; tests, too.            crossprod() and "%*%" methods added; tests, too.
483          * tests/matprod.R: new, for testing these          * tests/matprod.R: new, for testing these
484    
485  2005-03-03  Douglas Bates  <bates@bates1-home>  2005-03-03  Douglas Bates  <bates@wisc.edu>
486    
487          * src/lmer.c (lmer_fitted): Added.          * src/lmer.c (lmer_fitted): Added.
488    
489  2005-03-02  Douglas Bates  <bates@bates1-home>  2005-03-02  Douglas Bates  <bates@wisc.edu>
490    
491          * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix          * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
492    
493  2005-02-28  Douglas Bates  <bates@bates1-home>  2005-02-28  Douglas Bates  <bates@wisc.edu>
494    
495          * src/*.c,po/,inst/po: Internationalization and localization of          * src/*.c,po/,inst/po: Internationalization and localization of
496          the package.          the package.
# Line 148  Line 538 
538    
539          * */* : almost complete reorganization of classes.          * */* : almost complete reorganization of classes.
540    
541  2005-01-26  Douglas Bates  <bates@bates7>  2005-01-26  Douglas Bates  <bates@wisc.edu>
542    
543          * R/AllGeneric.R: Added matrix exponential generic expm and a method          * R/AllGeneric.R: Added matrix exponential generic expm and a method
544          for the geMatrix class.          for the geMatrix class.
545    
546  2005-01-24  Douglas Bates  <bates@bates7>  2005-01-24  Douglas Bates  <bates@wisc.edu>
547    
548          * src/Makefile (clean): Remove *.a and *.so          * src/Makefile (clean): Remove *.a and *.so
549    
550          * man/cscBlocked-class.Rd: Remove reference to the lmer-class.          * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
551    
552  2005-01-23  Douglas Bates  <bates@bates7>  2005-01-23  Douglas Bates  <bates@wisc.edu>
553    
554          * src/lmer.c (Lind): Definition of Lind was backwards.  This only          * src/lmer.c (Lind): Definition of Lind was backwards.  This only
555          had an effect in cases with more than 2 grouping factors.          had an effect in cases with more than 2 grouping factors.
556    
557  2005-01-03  Douglas Bates  <bates@bates1-home>  2005-01-03  Douglas Bates  <bates@wisc.edu>
558    
559          * src/lmeRep.c (lmer_variances): change from lmeRep to lmer          * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
560    
561  2004-12-23  Douglas Bates  <bates@bates1-home>  2004-12-23  Douglas Bates  <bates@wisc.edu>
562    
563          * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines          * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
564          and R_useDynamicSymbols (suggested by B.D.Ripley).          and R_useDynamicSymbols (suggested by B.D.Ripley).
565    
566  2004-12-14  Douglas Bates  <bates@bates1-home>  2004-12-14  Douglas Bates  <bates@wisc.edu>
567    
568          * R/sscMatrix.R: Add determinant methods          * R/sscMatrix.R: Add determinant methods
569    
570          * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion          * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
571          for tripletMatrix to matrix.          for tripletMatrix to matrix.
572    
573  2004-12-13  Douglas Bates  <bates@bates1-home>  2004-12-13  Douglas Bates  <bates@wisc.edu>
574    
575          * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is          * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
576          no longer used.          no longer used.
# Line 192  Line 582 
582          for multivariate random effects with multiple grouping factors.          for multivariate random effects with multiple grouping factors.
583          Fixes part but not all of #15.          Fixes part but not all of #15.
584    
585  2004-12-03  Douglas Bates  <bates@bates1-home>  2004-12-03  Douglas Bates  <bates@wisc.edu>
586    
587          * src/lmeRep.c (lmeRep_factor): order of operations for multiple          * src/lmeRep.c (lmeRep_factor): order of operations for multiple
588          scalar grouping factors corrected.          scalar grouping factors corrected.
589    
590  2004-11-29  Douglas Bates  <bates@bates1-home>  2004-11-29  Douglas Bates  <bates@wisc.edu>
591    
592          * src/bCrosstab.c: remove diag_update which is no longer used          * src/bCrosstab.c: remove diag_update which is no longer used
593    
594  2004-11-16  Douglas Bates  <bates@bates1-home>  2004-11-16  Douglas Bates  <bates@wisc.edu>
595    
596          * src/Metis_utils.c: Move metis.h include to C sources so that the          * src/Metis_utils.c: Move metis.h include to C sources so that the
597          .h file can be included.          .h file can be included.
598    
599  2004-11-12  Douglas Bates  <bates@bates1-home>  2004-11-12  Douglas Bates  <bates@wisc.edu>
600    
601          * src/LU.c,geMatrix.c,trMatrix.c, etc.:          * src/LU.c,geMatrix.c,trMatrix.c, etc.:
602          Complete allocation of slots in NEW_OBJECT.          Complete allocation of slots in NEW_OBJECT.
603    
604          * src/Mutils.h: Moved list of symbols to an include file          * src/Mutils.h: Moved list of symbols to an include file
605    
606  2004-11-11  Douglas Bates  <bates@bates1-home>  2004-11-11  Douglas Bates  <bates@wisc.edu>
607    
608          * src/geMutils.c (Matrix_init): remove unused function          * src/geMutils.c (Matrix_init): remove unused function
609    
610  2004-11-10  Douglas Bates  <bates@bates1-home>  2004-11-10  Douglas Bates  <bates@wisc.edu>
611    
612          * src/cscMatrix.c (csc_to_imagemat): removed unused function          * src/cscMatrix.c (csc_to_imagemat): removed unused function
613    
614  2004-11-05  Douglas Bates  <bates@bates1-home>  2004-11-05  Douglas Bates  <bates@wisc.edu>
615    
616          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
617    
618  2004-10-27  Douglas Bates  <bates@bates1-home>  2004-10-27  Douglas Bates  <bates@wisc.edu>
619    
620          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
621    
622  2004-10-04  Douglas Bates  <bates@bates1-home>  2004-10-04  Douglas Bates  <bates@wisc.edu>
623    
624          * src/init.c: Created R_init_Matrix and added registration of C          * src/init.c: Created R_init_Matrix and added registration of C
625          routines.          routines.
626    
627  2004-10-02  Douglas Bates  <bates@bates1-home>  2004-10-02  Douglas Bates  <bates@wisc.edu>
628    
629          * R/tripletMatrix.R: Force a require(lattice) for the image methods.          * R/tripletMatrix.R: Force a require(lattice) for the image methods.
630    
631  2004-06-15  Douglas Bates  <bates@bates7>  2004-06-15  Douglas Bates  <bates@wisc.edu>
632    
633          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
634    

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