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revision 726, Thu May 12 14:59:04 2005 UTC revision 1230, Thu Mar 16 20:03:41 2006 UTC
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1  2005-05-11  Douglas Bates  <bates@bates1-home>  2006-03-16  Douglas Bates  <bates@bates2>
2    
3            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
4            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
5    
6            * DESCRIPTION (Date): New release
7    
8    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
9    
10            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
11    
12            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
13            * man/KNex.Rd: and other help files
14            * tests/*.R: several ones needed adaption
15            * inst/doc/Comparisons.Rnw: dito
16    
17    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
18    
19            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
20    
21            * tests/indexing.R: tests for new [<- methods for sparse matrices.
22    
23    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
24    
25            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
26    
27            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
28    
29    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
30    
31            * R/dMatrix.R: enable things like  M [ M < 10 ]
32            * R/dgeMatrix.R: implement it
33    
34    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
35    
36            * R/AllClass.R: define "summary.mer" and "*.lmer"
37            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
38            * R/lmer.R (show): now works with summary()
39    
40    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
41    
42            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
43            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
44                    support the above
45    
46    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
47    
48            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
49            Use glmFit$prior.weights for weights in a glmm.
50            Allow an option usePQL = FALSE to skip the PQL steps for the
51            Laplace method (and, in time, the AGQ method).
52    
53            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
54            into a separate function internal_mer_Xfactor to be able to call
55            it from internal_bhat.
56    
57    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
58    
59            * tests/Class+Meth.R (tstMatrixClass): function for much better
60            testing; now again of all actual classes.
61    
62            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
63                    use macros and define make_d_matrix_* and make_i_matrix_*
64                    where _i_ is for the ldense routines:
65    
66            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
67            * src/ldense.c (lsyMatrix_as_lgeMatrix):
68    
69            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
70    
71    
72    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
73    
74            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
75                    many different kinds of matrices.
76            * R/*.R: quite a few new methods were needed for R CMD check with
77                    new Matrix().  Very good for users playing around.
78    
79    
80    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
81    
82            * src/dgeMatrix.c (dMatrix_validate): new
83            * src/Mutils.c (dense_nonpacked_validate): new
84    
85            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
86    
87    
88    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
89    
90            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
91    
92    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
93    
94            * DESCRIPTION (Version): 0.99-6 released to CRAN
95    
96            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
97            segfault in cases with multiple non-nested grouping factors.
98    
99    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
100    
101            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
102                    (Depends): also on 'utils'
103    
104            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
105            * R/diagMatrix.R (Diagonal): constructor and methods for
106            diagonal matrices
107    
108            * R/ltTMatrix.R: new "minimal methods"
109    
110    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
111    
112            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
113            all methods (and help files).
114    
115    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
116    
117            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
118                    for case (dimn.  op  no_dimn.)
119    
120    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
121    
122            * DESCRIPTION (Version): 0.99-2  released to CRAN
123    
124    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
125    
126            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
127            by Julian Faraway.
128    
129    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
130    
131            * R/Auxiliaries.R (try_as): new utility
132            * R/sparseMatrix.R: use try_as() in coercion to original class
133    
134    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
135    
136            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
137    
138    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
139    
140            * R/Auxiliaries.R (dimNamesCheck): added
141    
142            * R/Matrix.R (as.array), (as.vector): new
143    
144    2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
145    
146            * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
147                    default.
148            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
149                    "pMatrix" now contains "sparseMatrix"
150    
151    2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
152    
153            * tests/Class+Meth.R: new tests; t(t(m)) == m
154    
155            * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
156    
157            * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
158            * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
159    
160            * R/dspMatrix.R: typo in "t" method
161    
162    2005-09-18  Douglas Bates  <bates@wisc.edu>
163    
164            * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
165            * R/Tsparse.R: instead of R/gTMatrix.R
166            * R/Csparse.R: new
167            * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
168            * src/Tsparse.c: new; many trivial methods calling cholmod_()
169            * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
170                            via cholmod
171    
172    2005-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
173    
174            * R/Auxiliaries.R (non0ind): new function using new C code
175            * src/dgCMatrix.c (compressed_non_0_ij): new utility
176    
177    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
178    
179            * src/chm_common.h: header file required by all C sources that
180            call CHOLMOD functions.  It defines a cholmod_common structure
181            called 'c' whose address is passed as the last argument to
182            (virtually) every CHOLMOD function.
183    
184            * src/Pattern.c: Simple example of the use of CHOLMOD.
185    
186            * src/init.c: initialize and finalize the cholmod_common structure.
187    
188            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
189            LDL and CCOLAMD from the U. of Florida sparse matrix library.
190    
191    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
192    
193            * inst/test-tools.R: new file collecting the utility functions used
194                    in ./tests/*.R
195    
196            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
197            * R/Matrix.R (cbind2): methods for NULL and missing
198    
199    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
200    
201            * R/AllClass.R: new "index" class for "[" and "[<-":
202                    First cut at "symmetricMatrix" and "triangularMatrix"
203            * R/gTMatrix.R (.ind.prep): new function;
204                    Logical and character indexing now work too.
205            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
206            * tests/indexing.R: new, including *.Rout.save
207            * tests/dgTMatrix.R: new
208    
209    2005-08-29  Douglas Bates  <bates@wisc.edu>
210    
211            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
212            indicator pos not being updated.  Also enforced upper triangular
213            for symmetric case.  Need to coerce edges component of elements of
214            edge list - grr! (Why don't they define their classes cleanly?)
215    
216    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
217    
218            * R/Matrix.R:  added first "[<-" methods; not yet functional
219            * R/denseMatrix.R: dito
220            * man/Subassign-methods.Rd: new help file for these
221    
222    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
223    
224            * DESCRIPTION (Version): 0.98-6
225    
226            * R/denseMatrix.R: new file for "[" fallback methods for all dense
227            matrices.
228    
229    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
230    
231            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
232                    as( <logical>, "matrix")
233    
234            * R/pMatrix.R: coercion to "lgTMatrix"
235    
236            * R/gTMatrix.R: new virtual class to define "[" methods for.
237            * man/gTMatrix-class.Rd:
238            * General slight re-organization of where "[" methods are defined.
239              more to come.
240    
241    2005-08-18  Douglas Bates  <bates@wisc.edu>
242    
243            * DESCRIPTION (Version): 0.98-5  released to CRAN
244    
245            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
246            * .....
247    
248    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
249    
250            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
251            or glmer objects.
252    
253    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
254    
255            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
256    
257    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
258    
259            * R/HBMM.R: finish re-writing R-only code.
260    
261    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
262    
263            * man/externalFormats.Rd: move documentation for writeHB and
264            writeMM here.
265    
266            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
267            (suggested by Paul Roecker).
268    
269            * tests/validObj.R (assertError): Comment out test that is failing
270            after recent changes in r-devel.
271    
272    
273    2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
274    
275            * R/AllClass.R: intermediate virtual class "denseMatrix"
276            * man/denseMatrix-class.Rd
277            * NAMESPACE: export it, and also export
278            * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
279    
280    2005-08-10  Douglas Bates  <bates@wisc.edu>
281    
282            * DESCRIPTION (Version): 0.98-3 to CRAN
283    
284            * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
285            matrix_solve code (which was really, really wrong).
286    
287    2005-08-07  Douglas Bates  <bates@wisc.edu>
288    
289            * DESCRIPTION (Version): 0.98-2
290    
291            * R/HBMM.R (readHB), (readMM): read Matrix Market formats
292    
293            * R/lmer.R (abbrvNms): new
294            * R/lmer.R (mcmcsamp): allow transformed parameters
295            * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
296            for the Harwell-Boeing and the MatrixMarket formats.
297    
298    2005-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
299    
300            * man/dtrMatrix-class.Rd: add examples
301            * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
302    
303            * TODO: note the dtpMatrix (docu) bug
304    
305            * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
306            in order to ensure that new as.matrix() is used by old functions,
307            e.g., svd(), qr(), eigen(), dist(),..;
308                  apply(), also matplot() or pairs().
309    
310    
311    2005-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
312    
313            * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
314              add comments about 'control' / lmerControl() arguments
315    
316    2005-07-27  Douglas Bates  <bates@wisc.edu>
317    
318            * man/sleepstudy.Rd: Added the sleep data set.
319            * DESCRIPTION (Version): 0.98-1  released to CRAN
320    
321    2005-07-12  Douglas Bates  <bates@wisc.edu>
322            * man/sleepstudy.Rd: Added the sleep data set.
323    
324            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
325            .Call calls that were producing spurious output.
326    
327    2005-07-05  Douglas Bates  <bates@wisc.edu>
328    
329            * R/lmer.R (lmer): stored updated variance component estimates in
330            mer object for the generalized model.  (Bug reported by Renaud
331            Lancelot).
332    
333    2005-07-03  Douglas Bates  <bates@wisc.edu>
334    
335            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
336            unidimensional case.
337    
338    2005-06-08  Douglas Bates  <bates@wisc.edu>
339    
340            * DESCRIPTION (Version): 0.96-1
341    
342            * moved  lmer-class' R and C code moved from lme4 to here
343    
344    2005-06-04  Douglas Bates  <bates@wisc.edu>
345    
346            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
347            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
348    
349    2005-06-02  Douglas Bates  <bates@wisc.edu>
350    
351            * src/Makefile.win: Forgot to update this when Makefile changed.
352    
353    2005-05-11  Douglas Bates  <bates@wisc.edu>
354    
355          * src/dgCMatrix.c (csc_transpose): Simplified function fixing a          * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
356          bug reported by Kurt Hornik and Michael Hahsler.          bug reported by Kurt Hornik and Michael Hahsler.
357    
358  2005-05-10  Douglas Bates  <bates@bates1-home>  2005-05-10  Douglas Bates  <bates@wisc.edu>
359    
360          * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for          * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
361          logical sparse matrices.  These will also be used in the symbolic          logical sparse matrices.  These will also be used in the symbolic
# Line 12  Line 364 
364          * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions          * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
365          of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr          of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
366    
367  2005-05-06  Douglas Bates  <bates@bates1-home>  2005-05-06  Douglas Bates  <bates@wisc.edu>
368    
369          * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of          * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
370          colMeans, colSums, rowMeans and rowSums.          colMeans, colSums, rowMeans and rowSums.
371    
372  2005-04-18  Douglas Bates  <bates@bates1-home>  2005-04-18  Douglas Bates  <bates@wisc.edu>
373    
374          * src/lgCMatrix.[ch]: code for _validate method and stub for          * src/lgCMatrix.[ch]: code for _validate method and stub for
375          multiplication operation.          multiplication operation.
# Line 30  Line 382 
382    
383          * src/{many files}: Tighten code by using ALLOC_SLOT.          * src/{many files}: Tighten code by using ALLOC_SLOT.
384    
385  2005-04-15  Douglas Bates  <bates@bates1-home>  2005-04-15  Douglas Bates  <bates@wisc.edu>
386    
387          * R/AllClass.R: Add lgTMatrix and lgCMatrix classes          * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
388    
389          * DESCRIPTION: Eliminate import of stats.          * DESCRIPTION: Eliminate import of stats.
390    
391    
392  2005-04-06  Douglas Bates  <bates@bates1-home>  2005-04-06  Douglas Bates  <bates@wisc.edu>
393    
394          * R/AllClass.R : add logical sparse matrix classes          * R/AllClass.R : add logical sparse matrix classes
395    
# Line 46  Line 398 
398          * R/dgTMatrix.R: add "[" method for triplet matrices          * R/dgTMatrix.R: add "[" method for triplet matrices
399          * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse          * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
400    
401  2005-03-31  Douglas Bates  <bates@bates1-home>  2005-03-31  Douglas Bates  <bates@wisc.edu>
402    
403          * DESCRIPTION (Version): release 0.95-5 to CRAN          * DESCRIPTION (Version): release 0.95-5 to CRAN
404    
# Line 72  Line 424 
424          * tests/dpoMatrix.R: tests should now be less platform dependent;          * tests/dpoMatrix.R: tests should now be less platform dependent;
425            also run for R 2.1.0; using as.matrix()            also run for R 2.1.0; using as.matrix()
426    
427  2005-03-15  Douglas Bates  <bates@bates1-home>  2005-03-15  Douglas Bates  <bates@wisc.edu>
428    
429          * R/pMatrix.R: "pMatrix" class added          * R/pMatrix.R: "pMatrix" class added
430          * ....          * ....
431    
432  2005-03-14  Douglas Bates  <bates@bates1-home>  2005-03-14  Douglas Bates  <bates@wisc.edu>
433    
434          * R/dtpMatrix.R: Add unpack method and an example.          * R/dtpMatrix.R: Add unpack method and an example.
435    
# Line 92  Line 444 
444            crossprod() and "%*%" methods added; tests, too.            crossprod() and "%*%" methods added; tests, too.
445          * tests/matprod.R: new, for testing these          * tests/matprod.R: new, for testing these
446    
447  2005-03-03  Douglas Bates  <bates@bates1-home>  2005-03-03  Douglas Bates  <bates@wisc.edu>
448    
449          * src/lmer.c (lmer_fitted): Added.          * src/lmer.c (lmer_fitted): Added.
450    
451  2005-03-02  Douglas Bates  <bates@bates1-home>  2005-03-02  Douglas Bates  <bates@wisc.edu>
452    
453          * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix          * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
454    
455  2005-02-28  Douglas Bates  <bates@bates1-home>  2005-02-28  Douglas Bates  <bates@wisc.edu>
456    
457          * src/*.c,po/,inst/po: Internationalization and localization of          * src/*.c,po/,inst/po: Internationalization and localization of
458          the package.          the package.
# Line 148  Line 500 
500    
501          * */* : almost complete reorganization of classes.          * */* : almost complete reorganization of classes.
502    
503  2005-01-26  Douglas Bates  <bates@bates7>  2005-01-26  Douglas Bates  <bates@wisc.edu>
504    
505          * R/AllGeneric.R: Added matrix exponential generic expm and a method          * R/AllGeneric.R: Added matrix exponential generic expm and a method
506          for the geMatrix class.          for the geMatrix class.
507    
508  2005-01-24  Douglas Bates  <bates@bates7>  2005-01-24  Douglas Bates  <bates@wisc.edu>
509    
510          * src/Makefile (clean): Remove *.a and *.so          * src/Makefile (clean): Remove *.a and *.so
511    
512          * man/cscBlocked-class.Rd: Remove reference to the lmer-class.          * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
513    
514  2005-01-23  Douglas Bates  <bates@bates7>  2005-01-23  Douglas Bates  <bates@wisc.edu>
515    
516          * src/lmer.c (Lind): Definition of Lind was backwards.  This only          * src/lmer.c (Lind): Definition of Lind was backwards.  This only
517          had an effect in cases with more than 2 grouping factors.          had an effect in cases with more than 2 grouping factors.
518    
519  2005-01-03  Douglas Bates  <bates@bates1-home>  2005-01-03  Douglas Bates  <bates@wisc.edu>
520    
521          * src/lmeRep.c (lmer_variances): change from lmeRep to lmer          * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
522    
523  2004-12-23  Douglas Bates  <bates@bates1-home>  2004-12-23  Douglas Bates  <bates@wisc.edu>
524    
525          * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines          * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
526          and R_useDynamicSymbols (suggested by B.D.Ripley).          and R_useDynamicSymbols (suggested by B.D.Ripley).
527    
528  2004-12-14  Douglas Bates  <bates@bates1-home>  2004-12-14  Douglas Bates  <bates@wisc.edu>
529    
530          * R/sscMatrix.R: Add determinant methods          * R/sscMatrix.R: Add determinant methods
531    
532          * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion          * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
533          for tripletMatrix to matrix.          for tripletMatrix to matrix.
534    
535  2004-12-13  Douglas Bates  <bates@bates1-home>  2004-12-13  Douglas Bates  <bates@wisc.edu>
536    
537          * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is          * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
538          no longer used.          no longer used.
# Line 192  Line 544 
544          for multivariate random effects with multiple grouping factors.          for multivariate random effects with multiple grouping factors.
545          Fixes part but not all of #15.          Fixes part but not all of #15.
546    
547  2004-12-03  Douglas Bates  <bates@bates1-home>  2004-12-03  Douglas Bates  <bates@wisc.edu>
548    
549          * src/lmeRep.c (lmeRep_factor): order of operations for multiple          * src/lmeRep.c (lmeRep_factor): order of operations for multiple
550          scalar grouping factors corrected.          scalar grouping factors corrected.
551    
552  2004-11-29  Douglas Bates  <bates@bates1-home>  2004-11-29  Douglas Bates  <bates@wisc.edu>
553    
554          * src/bCrosstab.c: remove diag_update which is no longer used          * src/bCrosstab.c: remove diag_update which is no longer used
555    
556  2004-11-16  Douglas Bates  <bates@bates1-home>  2004-11-16  Douglas Bates  <bates@wisc.edu>
557    
558          * src/Metis_utils.c: Move metis.h include to C sources so that the          * src/Metis_utils.c: Move metis.h include to C sources so that the
559          .h file can be included.          .h file can be included.
560    
561  2004-11-12  Douglas Bates  <bates@bates1-home>  2004-11-12  Douglas Bates  <bates@wisc.edu>
562    
563          * src/LU.c,geMatrix.c,trMatrix.c, etc.:          * src/LU.c,geMatrix.c,trMatrix.c, etc.:
564          Complete allocation of slots in NEW_OBJECT.          Complete allocation of slots in NEW_OBJECT.
565    
566          * src/Mutils.h: Moved list of symbols to an include file          * src/Mutils.h: Moved list of symbols to an include file
567    
568  2004-11-11  Douglas Bates  <bates@bates1-home>  2004-11-11  Douglas Bates  <bates@wisc.edu>
569    
570          * src/geMutils.c (Matrix_init): remove unused function          * src/geMutils.c (Matrix_init): remove unused function
571    
572  2004-11-10  Douglas Bates  <bates@bates1-home>  2004-11-10  Douglas Bates  <bates@wisc.edu>
573    
574          * src/cscMatrix.c (csc_to_imagemat): removed unused function          * src/cscMatrix.c (csc_to_imagemat): removed unused function
575    
576  2004-11-05  Douglas Bates  <bates@bates1-home>  2004-11-05  Douglas Bates  <bates@wisc.edu>
577    
578          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
579    
580  2004-10-27  Douglas Bates  <bates@bates1-home>  2004-10-27  Douglas Bates  <bates@wisc.edu>
581    
582          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
583    
584  2004-10-04  Douglas Bates  <bates@bates1-home>  2004-10-04  Douglas Bates  <bates@wisc.edu>
585    
586          * src/init.c: Created R_init_Matrix and added registration of C          * src/init.c: Created R_init_Matrix and added registration of C
587          routines.          routines.
588    
589  2004-10-02  Douglas Bates  <bates@bates1-home>  2004-10-02  Douglas Bates  <bates@wisc.edu>
590    
591          * R/tripletMatrix.R: Force a require(lattice) for the image methods.          * R/tripletMatrix.R: Force a require(lattice) for the image methods.
592    
593  2004-06-15  Douglas Bates  <bates@bates7>  2004-06-15  Douglas Bates  <bates@wisc.edu>
594    
595          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
596    

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