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revision 392, Tue Dec 14 20:01:16 2004 UTC revision 809, Tue Jul 12 23:00:50 2005 UTC
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1    2005-07-12  Douglas Bates  <bates@localhost.localdomain>
2    
3            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
4            .Call calls that were producing spurious output.
5    
6    2005-07-05  Douglas Bates  <bates@bates1-home>
7    
8            * R/lmer.R (lmer): stored updated variance component estimates in
9            mer object for the generalized model.  (Bug reported by Renaud
10            Lancelot).
11    
12    2005-07-03  Douglas Bates  <bates@bates1-home>
13    
14            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
15            unidimensional case.
16    
17    2005-06-08  Douglas Bates  <bates@bates1-home>
18    
19            * DESCRIPTION (Version): 0.96-1
20    
21            * moved  lmer-class' R and C code moved from lme4 to here
22    
23    2005-06-04  Douglas Bates  <bates@bates1-home>
24    
25            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
26            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
27    
28    2005-06-02  Douglas Bates  <bates@bates1-home>
29    
30            * src/Makefile.win: Forgot to update this when Makefile changed.
31    
32    2005-05-11  Douglas Bates  <bates@bates1-home>
33    
34            * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
35            bug reported by Kurt Hornik and Michael Hahsler.
36    
37    2005-05-10  Douglas Bates  <bates@bates1-home>
38    
39            * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
40            logical sparse matrices.  These will also be used in the symbolic
41            analysis for lmer objects.
42    
43            * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
44            of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
45    
46    2005-05-06  Douglas Bates  <bates@bates1-home>
47    
48            * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
49            colMeans, colSums, rowMeans and rowSums.
50    
51    2005-04-18  Douglas Bates  <bates@bates1-home>
52    
53            * src/lgCMatrix.[ch]: code for _validate method and stub for
54            multiplication operation.
55    
56            * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
57            to dgetrs.
58    
59            * src/init.c: Fix cut-and-paste error in definition of
60            dgeMatrix_matrix_solve
61    
62            * src/{many files}: Tighten code by using ALLOC_SLOT.
63    
64    2005-04-15  Douglas Bates  <bates@bates1-home>
65    
66            * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
67    
68            * DESCRIPTION: Eliminate import of stats.
69    
70    
71    2005-04-06  Douglas Bates  <bates@bates1-home>
72    
73            * R/AllClass.R : add logical sparse matrix classes
74    
75    2005-04-01  Martin Maechler  <maechler@stat.math.ethz.ch>
76    
77            * R/dgTMatrix.R: add "[" method for triplet matrices
78            * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
79    
80    2005-03-31  Douglas Bates  <bates@bates1-home>
81    
82            * DESCRIPTION (Version): release 0.95-5 to CRAN
83    
84            * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
85            * R/sparseMatrix.R: %*%, crossprod()
86            * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
87            * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
88            * src/lmer.c (lmer_fitted): fix thinko
89    
90    2005-03-26  Martin Maechler  <maechler@stat.math.ethz.ch>
91    
92            * R/AllClass.R: add two virtual sparse classes ``on top''
93    
94    2005-03-24  Martin Maechler  <maechler@stat.math.ethz.ch>
95    
96            * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
97                    correspondingly fix examples and tests/ since new()
98                    doesn't work for virtual classes.
99    
100    2005-03-17  Martin Maechler  <maechler@stat.math.ethz.ch>
101    
102            * R/Matrix.R (as.matrix): method and one for unname()
103            * tests/dpoMatrix.R: tests should now be less platform dependent;
104              also run for R 2.1.0; using as.matrix()
105    
106    2005-03-15  Douglas Bates  <bates@bates1-home>
107    
108            * R/pMatrix.R: "pMatrix" class added
109            * ....
110    
111    2005-03-14  Douglas Bates  <bates@bates1-home>
112    
113            * R/dtpMatrix.R: Add unpack method and an example.
114    
115            * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
116            of general symmetric matrices and associated S4 methods.
117    
118    2005-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
119            +
120    2005-03-05  Martin Maechler  <maechler@stat.math.ethz.ch>
121    
122            * R/dgeMatrix.R (setAs): and many other files: more coercion,
123              crossprod() and "%*%" methods added; tests, too.
124            * tests/matprod.R: new, for testing these
125    
126    2005-03-03  Douglas Bates  <bates@bates1-home>
127    
128            * src/lmer.c (lmer_fitted): Added.
129    
130    2005-03-02  Douglas Bates  <bates@bates1-home>
131    
132            * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
133    
134    2005-02-28  Douglas Bates  <bates@bates1-home>
135    
136            * src/*.c,po/,inst/po: Internationalization and localization of
137            the package.
138    
139            * src/ldl.[ch]: Removed these as their contents are referenced in the
140            R_ldl.c file.
141    
142            * src/flame.[ch]: Removed these source files.
143    
144            * src/dtrMatrix.c (make_array_triangular): Move to Mutils
145    
146            * src/LU.[ch],src/init.c: absorb in factorizations
147    
148            * src/Mutils.h: prepare for internationalization
149    
150            * src/cblas.h: move the enum definitions to Mutils.h and remove
151            this file
152    
153    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
154    
155            * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
156    
157            * R/dtrMatrix.R: fix t() method
158    
159            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
160            * NAMESPACE: export them (and import generics from "methods")
161            * tests/group-methods.R : and test them.
162    
163            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
164            border case
165    
166    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
167    
168            * DESCRIPTION (Version): 0.95-2  released to CRAN
169    
170            * src/dgBCMatrix.c:
171            * src/lmer.c: many changes
172            * ...
173    
174    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
175    
176            * R/Matrix.R: add more sophisticated show() method.
177    
178    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
179    
180            * */* : almost complete reorganization of classes.
181    
182    2005-01-26  Douglas Bates  <bates@bates7>
183    
184            * R/AllGeneric.R: Added matrix exponential generic expm and a method
185            for the geMatrix class.
186    
187    2005-01-24  Douglas Bates  <bates@bates7>
188    
189            * src/Makefile (clean): Remove *.a and *.so
190    
191            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
192    
193    2005-01-23  Douglas Bates  <bates@bates7>
194    
195            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
196            had an effect in cases with more than 2 grouping factors.
197    
198    2005-01-03  Douglas Bates  <bates@bates1-home>
199    
200            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
201    
202    2004-12-23  Douglas Bates  <bates@bates1-home>
203    
204            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
205            and R_useDynamicSymbols (suggested by B.D.Ripley).
206    
207  2004-12-14  Douglas Bates  <bates@bates1-home>  2004-12-14  Douglas Bates  <bates@bates1-home>
208    
209          * R/sscMatrix.R: Add determinant methods          * R/sscMatrix.R: Add determinant methods

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