SCM

SCM Repository

[matrix] Diff of /pkg/ChangeLog
ViewVC logotype

Diff of /pkg/ChangeLog

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 392, Tue Dec 14 20:01:16 2004 UTC revision 1268, Wed May 17 17:42:09 2006 UTC
# Line 1  Line 1 
1  2004-12-14  Douglas Bates  <bates@bates1-home>  2006-05-17  Douglas Bates  <bates@stat.wisc.edu>
2    
3            *  R/{AllGeneric.R,Csparse.R},man/band.Rd,NAMESPACE: changed name
4            of lowerTriMatrix generic and methods to tril (also upper to triu)
5            and added a general band extractor.
6    
7    2006-05-16  Douglas Bates  <bates@stat.wisc.edu>
8    
9            * R/pedigree.R (pedigree): Replace sire and dam values outside the
10            allowable range with NAs. Added a corresponding check in the
11            validity check for the pedigree class.
12    
13            * R/[CT]sparse.R ([t]crossprod): The result of single-argument
14            crossprod methods now inherits from symmetricMatrix.
15    
16    2006-05-15  Douglas Bates  <bates@stat.wisc.edu>
17    
18            * R/AllGeneric.R (lowerTriMatrix): Added (but did not export)
19            generics lowerTriMatrix and upperTriMatrix along with methods for
20            the Csparse virtual class.  Also added a C function Csparse_band
21            that implements these methods by calling cholmod_band.
22    
23    2006-05-15  Martin Maechler  <maechler@stat.math.ethz.ch>
24    
25            * R/Tsparse.R ("["): column or row subsetting; @Dimnames[k] got
26            erased when it was NULL.  This led to invalid subselections!
27    
28    2006-04-25  Douglas Bates  <bates@stat.wisc.edu>
29    
30            * R/dtCMatrix.R: avoid coercion of dtCMatrix object to dgCMatrix
31            in method for "t" so as not to lose the unit diagonal property.
32    
33    2006-04-19  Douglas Bates  <bates@stat.wisc.edu>
34    
35            * R/lmer.R, R/AllGeneric.R, NAMESPACE: Remove the postVar generic
36            and methods.  This is now an option to the ranef method for the
37            mer class.
38    
39            * src/cs_utils.c: Ensure that the nz component is -1 for a
40            compressed column-oriented matrix.  Minor formatting cleanup.
41    
42            * man/lmer-class.Rd: Document the qqmath method for ranef.lmer
43            objects.
44    
45    2006-04-19  Martin Maechler  <maechler@stat.math.ethz.ch>
46    
47            * R/Auxiliaries.R (diagU2N): new for the solve() methods in
48            * R/dtCMatrix.R: where dgC -> dgT coercion now preserves diag = "U".
49    
50    2006-04-15  Douglas Bates  <bates@stat.wisc.edu>
51    
52            * src/cs.[ch],src/cs_utils.[ch] : Added Tim Davis' CSparse library
53            in cs.[ch] and utilities to interface to that code in cs_utils.[ch].
54    
55            * R/dtCMatrix.R, src/dtCMatrix.[ch] : CSparse-based solve methods
56            for the dtCMatrix class.
57    
58    2006-04-12  Douglas Bates  <bates@stat.wisc.edu>
59    
60            * R/pedigree.R, R/AllClass.R, NAMESPACE: added a pedigree class
61            and methods for it.
62    
63    2006-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
64    
65            * R/dgCMatrix.R: add  storage.mode(.) <- "double" for "matrix"
66            arguments, such that M %*% 1:6 now works
67            * Tests/matprod.R: test the above
68    
69    2006-04-03  Douglas Bates  <bates@stat.wisc.edu>
70    
71            * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
72            the ranef.lmer class.
73    
74            * R/AllClass.R, NAMESPACE, R/lmer.R: Added a postVar generic and
75            methods to extract the posterior variances from the bVar slot.
76    
77    2006-03-30  Martin Maechler  <maechler@stat.math.ethz.ch>
78    
79            * R/dtCMatrix.R: allow coercion from  dgC* to triangular (dtC*)
80            * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
81    
82            * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
83            * tests/simple: (extended)
84    
85            * R/sparseMatrix.R (isTriangular): now using much improved
86            * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
87    
88    2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
89    
90            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
91            (problem report from Franklin Parlamis).  This should be done
92            generally.
93    
94    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
95    
96            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
97            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
98            update the plot methods.
99    
100    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
101    
102            * R/lmer.R (resid and ranef methods):  Added methods for the
103            "residuals" and "resid" generic but only for linear mixed model
104            fits.  Changed the ranef method to return a list of data frames so
105            that the plot methods now work.
106    
107    2006-03-16  Douglas Bates  <bates@bates2>
108    
109            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
110            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
111    
112            * DESCRIPTION (Date): New release
113    
114    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
115    
116            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
117    
118            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
119            * man/KNex.Rd: and other help files
120            * tests/*.R: several ones needed adaption
121            * inst/doc/Comparisons.Rnw: dito
122    
123    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
124    
125            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
126    
127            * tests/indexing.R: tests for new [<- methods for sparse matrices.
128    
129    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
130    
131            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
132    
133            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
134    
135    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
136    
137            * R/dMatrix.R: enable things like  M [ M < 10 ]
138            * R/dgeMatrix.R: implement it
139    
140    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
141    
142            * R/AllClass.R: define "summary.mer" and "*.lmer"
143            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
144            * R/lmer.R (show): now works with summary()
145    
146    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
147    
148            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
149            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
150                    support the above
151    
152    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
153    
154            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
155            Use glmFit$prior.weights for weights in a glmm.
156            Allow an option usePQL = FALSE to skip the PQL steps for the
157            Laplace method (and, in time, the AGQ method).
158    
159            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
160            into a separate function internal_mer_Xfactor to be able to call
161            it from internal_bhat.
162    
163    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
164    
165            * tests/Class+Meth.R (tstMatrixClass): function for much better
166            testing; now again of all actual classes.
167    
168            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
169                    use macros and define make_d_matrix_* and make_i_matrix_*
170                    where _i_ is for the ldense routines:
171    
172            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
173            * src/ldense.c (lsyMatrix_as_lgeMatrix):
174    
175            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
176    
177    
178    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
179    
180            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
181                    many different kinds of matrices.
182            * R/*.R: quite a few new methods were needed for R CMD check with
183                    new Matrix().  Very good for users playing around.
184    
185    
186    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
187    
188            * src/dgeMatrix.c (dMatrix_validate): new
189            * src/Mutils.c (dense_nonpacked_validate): new
190    
191            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
192    
193    
194    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
195    
196            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
197    
198    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
199    
200            * DESCRIPTION (Version): 0.99-6 released to CRAN
201    
202            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
203            segfault in cases with multiple non-nested grouping factors.
204    
205    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
206    
207            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
208                    (Depends): also on 'utils'
209    
210            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
211            * R/diagMatrix.R (Diagonal): constructor and methods for
212            diagonal matrices
213    
214            * R/ltTMatrix.R: new "minimal methods"
215    
216    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
217    
218            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
219            all methods (and help files).
220    
221    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
222    
223            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
224                    for case (dimn.  op  no_dimn.)
225    
226    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
227    
228            * DESCRIPTION (Version): 0.99-2  released to CRAN
229    
230    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
231    
232            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
233            by Julian Faraway.
234    
235    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
236    
237            * R/Auxiliaries.R (try_as): new utility
238            * R/sparseMatrix.R: use try_as() in coercion to original class
239    
240    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
241    
242            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
243    
244    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
245    
246            * R/Auxiliaries.R (dimNamesCheck): added
247    
248            * R/Matrix.R (as.array), (as.vector): new
249    
250    2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
251    
252            * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
253                    default.
254            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
255                    "pMatrix" now contains "sparseMatrix"
256    
257    2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
258    
259            * tests/Class+Meth.R: new tests; t(t(m)) == m
260    
261            * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
262    
263            * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
264            * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
265    
266            * R/dspMatrix.R: typo in "t" method
267    
268    2005-09-18  Douglas Bates  <bates@wisc.edu>
269    
270            * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
271            * R/Tsparse.R: instead of R/gTMatrix.R
272            * R/Csparse.R: new
273            * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
274            * src/Tsparse.c: new; many trivial methods calling cholmod_()
275            * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
276                            via cholmod
277    
278    2005-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
279    
280            * R/Auxiliaries.R (non0ind): new function using new C code
281            * src/dgCMatrix.c (compressed_non_0_ij): new utility
282    
283    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
284    
285            * src/chm_common.h: header file required by all C sources that
286            call CHOLMOD functions.  It defines a cholmod_common structure
287            called 'c' whose address is passed as the last argument to
288            (virtually) every CHOLMOD function.
289    
290            * src/Pattern.c: Simple example of the use of CHOLMOD.
291    
292            * src/init.c: initialize and finalize the cholmod_common structure.
293    
294            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
295            LDL and CCOLAMD from the U. of Florida sparse matrix library.
296    
297    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
298    
299            * inst/test-tools.R: new file collecting the utility functions used
300                    in ./tests/*.R
301    
302            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
303            * R/Matrix.R (cbind2): methods for NULL and missing
304    
305    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
306    
307            * R/AllClass.R: new "index" class for "[" and "[<-":
308                    First cut at "symmetricMatrix" and "triangularMatrix"
309            * R/gTMatrix.R (.ind.prep): new function;
310                    Logical and character indexing now work too.
311            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
312            * tests/indexing.R: new, including *.Rout.save
313            * tests/dgTMatrix.R: new
314    
315    2005-08-29  Douglas Bates  <bates@wisc.edu>
316    
317            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
318            indicator pos not being updated.  Also enforced upper triangular
319            for symmetric case.  Need to coerce edges component of elements of
320            edge list - grr! (Why don't they define their classes cleanly?)
321    
322    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
323    
324            * R/Matrix.R:  added first "[<-" methods; not yet functional
325            * R/denseMatrix.R: dito
326            * man/Subassign-methods.Rd: new help file for these
327    
328    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
329    
330            * DESCRIPTION (Version): 0.98-6
331    
332            * R/denseMatrix.R: new file for "[" fallback methods for all dense
333            matrices.
334    
335    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
336    
337            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
338                    as( <logical>, "matrix")
339    
340            * R/pMatrix.R: coercion to "lgTMatrix"
341    
342            * R/gTMatrix.R: new virtual class to define "[" methods for.
343            * man/gTMatrix-class.Rd:
344            * General slight re-organization of where "[" methods are defined.
345              more to come.
346    
347    2005-08-18  Douglas Bates  <bates@wisc.edu>
348    
349            * DESCRIPTION (Version): 0.98-5  released to CRAN
350    
351            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
352            * .....
353    
354    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
355    
356            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
357            or glmer objects.
358    
359    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
360    
361            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
362    
363    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
364    
365            * R/HBMM.R: finish re-writing R-only code.
366    
367    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
368    
369            * man/externalFormats.Rd: move documentation for writeHB and
370            writeMM here.
371    
372            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
373            (suggested by Paul Roecker).
374    
375            * tests/validObj.R (assertError): Comment out test that is failing
376            after recent changes in r-devel.
377    
378    
379    2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
380    
381            * R/AllClass.R: intermediate virtual class "denseMatrix"
382            * man/denseMatrix-class.Rd
383            * NAMESPACE: export it, and also export
384            * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
385    
386    2005-08-10  Douglas Bates  <bates@wisc.edu>
387    
388            * DESCRIPTION (Version): 0.98-3 to CRAN
389    
390            * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
391            matrix_solve code (which was really, really wrong).
392    
393    2005-08-07  Douglas Bates  <bates@wisc.edu>
394    
395            * DESCRIPTION (Version): 0.98-2
396    
397            * R/HBMM.R (readHB), (readMM): read Matrix Market formats
398    
399            * R/lmer.R (abbrvNms): new
400            * R/lmer.R (mcmcsamp): allow transformed parameters
401            * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
402            for the Harwell-Boeing and the MatrixMarket formats.
403    
404    2005-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
405    
406            * man/dtrMatrix-class.Rd: add examples
407            * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
408    
409            * TODO: note the dtpMatrix (docu) bug
410    
411            * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
412            in order to ensure that new as.matrix() is used by old functions,
413            e.g., svd(), qr(), eigen(), dist(),..;
414                  apply(), also matplot() or pairs().
415    
416    
417    2005-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
418    
419            * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
420              add comments about 'control' / lmerControl() arguments
421    
422    2005-07-27  Douglas Bates  <bates@wisc.edu>
423    
424            * man/sleepstudy.Rd: Added the sleep data set.
425            * DESCRIPTION (Version): 0.98-1  released to CRAN
426    
427    2005-07-12  Douglas Bates  <bates@wisc.edu>
428            * man/sleepstudy.Rd: Added the sleep data set.
429    
430            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
431            .Call calls that were producing spurious output.
432    
433    2005-07-05  Douglas Bates  <bates@wisc.edu>
434    
435            * R/lmer.R (lmer): stored updated variance component estimates in
436            mer object for the generalized model.  (Bug reported by Renaud
437            Lancelot).
438    
439    2005-07-03  Douglas Bates  <bates@wisc.edu>
440    
441            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
442            unidimensional case.
443    
444    2005-06-08  Douglas Bates  <bates@wisc.edu>
445    
446            * DESCRIPTION (Version): 0.96-1
447    
448            * moved  lmer-class' R and C code moved from lme4 to here
449    
450    2005-06-04  Douglas Bates  <bates@wisc.edu>
451    
452            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
453            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
454    
455    2005-06-02  Douglas Bates  <bates@wisc.edu>
456    
457            * src/Makefile.win: Forgot to update this when Makefile changed.
458    
459    2005-05-11  Douglas Bates  <bates@wisc.edu>
460    
461            * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
462            bug reported by Kurt Hornik and Michael Hahsler.
463    
464    2005-05-10  Douglas Bates  <bates@wisc.edu>
465    
466            * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
467            logical sparse matrices.  These will also be used in the symbolic
468            analysis for lmer objects.
469    
470            * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
471            of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
472    
473    2005-05-06  Douglas Bates  <bates@wisc.edu>
474    
475            * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
476            colMeans, colSums, rowMeans and rowSums.
477    
478    2005-04-18  Douglas Bates  <bates@wisc.edu>
479    
480            * src/lgCMatrix.[ch]: code for _validate method and stub for
481            multiplication operation.
482    
483            * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
484            to dgetrs.
485    
486            * src/init.c: Fix cut-and-paste error in definition of
487            dgeMatrix_matrix_solve
488    
489            * src/{many files}: Tighten code by using ALLOC_SLOT.
490    
491    2005-04-15  Douglas Bates  <bates@wisc.edu>
492    
493            * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
494    
495            * DESCRIPTION: Eliminate import of stats.
496    
497    
498    2005-04-06  Douglas Bates  <bates@wisc.edu>
499    
500            * R/AllClass.R : add logical sparse matrix classes
501    
502    2005-04-01  Martin Maechler  <maechler@stat.math.ethz.ch>
503    
504            * R/dgTMatrix.R: add "[" method for triplet matrices
505            * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
506    
507    2005-03-31  Douglas Bates  <bates@wisc.edu>
508    
509            * DESCRIPTION (Version): release 0.95-5 to CRAN
510    
511            * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
512            * R/sparseMatrix.R: %*%, crossprod()
513            * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
514            * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
515            * src/lmer.c (lmer_fitted): fix thinko
516    
517    2005-03-26  Martin Maechler  <maechler@stat.math.ethz.ch>
518    
519            * R/AllClass.R: add two virtual sparse classes ``on top''
520    
521    2005-03-24  Martin Maechler  <maechler@stat.math.ethz.ch>
522    
523            * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
524                    correspondingly fix examples and tests/ since new()
525                    doesn't work for virtual classes.
526    
527    2005-03-17  Martin Maechler  <maechler@stat.math.ethz.ch>
528    
529            * R/Matrix.R (as.matrix): method and one for unname()
530            * tests/dpoMatrix.R: tests should now be less platform dependent;
531              also run for R 2.1.0; using as.matrix()
532    
533    2005-03-15  Douglas Bates  <bates@wisc.edu>
534    
535            * R/pMatrix.R: "pMatrix" class added
536            * ....
537    
538    2005-03-14  Douglas Bates  <bates@wisc.edu>
539    
540            * R/dtpMatrix.R: Add unpack method and an example.
541    
542            * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
543            of general symmetric matrices and associated S4 methods.
544    
545    2005-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
546            +
547    2005-03-05  Martin Maechler  <maechler@stat.math.ethz.ch>
548    
549            * R/dgeMatrix.R (setAs): and many other files: more coercion,
550              crossprod() and "%*%" methods added; tests, too.
551            * tests/matprod.R: new, for testing these
552    
553    2005-03-03  Douglas Bates  <bates@wisc.edu>
554    
555            * src/lmer.c (lmer_fitted): Added.
556    
557    2005-03-02  Douglas Bates  <bates@wisc.edu>
558    
559            * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
560    
561    2005-02-28  Douglas Bates  <bates@wisc.edu>
562    
563            * src/*.c,po/,inst/po: Internationalization and localization of
564            the package.
565    
566            * src/ldl.[ch]: Removed these as their contents are referenced in the
567            R_ldl.c file.
568    
569            * src/flame.[ch]: Removed these source files.
570    
571            * src/dtrMatrix.c (make_array_triangular): Move to Mutils
572    
573            * src/LU.[ch],src/init.c: absorb in factorizations
574    
575            * src/Mutils.h: prepare for internationalization
576    
577            * src/cblas.h: move the enum definitions to Mutils.h and remove
578            this file
579    
580    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
581    
582            * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
583    
584            * R/dtrMatrix.R: fix t() method
585    
586            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
587            * NAMESPACE: export them (and import generics from "methods")
588            * tests/group-methods.R : and test them.
589    
590            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
591            border case
592    
593    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
594    
595            * DESCRIPTION (Version): 0.95-2  released to CRAN
596    
597            * src/dgBCMatrix.c:
598            * src/lmer.c: many changes
599            * ...
600    
601    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
602    
603            * R/Matrix.R: add more sophisticated show() method.
604    
605    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
606    
607            * */* : almost complete reorganization of classes.
608    
609    2005-01-26  Douglas Bates  <bates@wisc.edu>
610    
611            * R/AllGeneric.R: Added matrix exponential generic expm and a method
612            for the geMatrix class.
613    
614    2005-01-24  Douglas Bates  <bates@wisc.edu>
615    
616            * src/Makefile (clean): Remove *.a and *.so
617    
618            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
619    
620    2005-01-23  Douglas Bates  <bates@wisc.edu>
621    
622            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
623            had an effect in cases with more than 2 grouping factors.
624    
625    2005-01-03  Douglas Bates  <bates@wisc.edu>
626    
627            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
628    
629    2004-12-23  Douglas Bates  <bates@wisc.edu>
630    
631            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
632            and R_useDynamicSymbols (suggested by B.D.Ripley).
633    
634    2004-12-14  Douglas Bates  <bates@wisc.edu>
635    
636          * R/sscMatrix.R: Add determinant methods          * R/sscMatrix.R: Add determinant methods
637    
638          * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion          * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
639          for tripletMatrix to matrix.          for tripletMatrix to matrix.
640    
641  2004-12-13  Douglas Bates  <bates@bates1-home>  2004-12-13  Douglas Bates  <bates@wisc.edu>
642    
643          * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is          * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
644          no longer used.          no longer used.
# Line 17  Line 650 
650          for multivariate random effects with multiple grouping factors.          for multivariate random effects with multiple grouping factors.
651          Fixes part but not all of #15.          Fixes part but not all of #15.
652    
653  2004-12-03  Douglas Bates  <bates@bates1-home>  2004-12-03  Douglas Bates  <bates@wisc.edu>
654    
655          * src/lmeRep.c (lmeRep_factor): order of operations for multiple          * src/lmeRep.c (lmeRep_factor): order of operations for multiple
656          scalar grouping factors corrected.          scalar grouping factors corrected.
657    
658  2004-11-29  Douglas Bates  <bates@bates1-home>  2004-11-29  Douglas Bates  <bates@wisc.edu>
659    
660          * src/bCrosstab.c: remove diag_update which is no longer used          * src/bCrosstab.c: remove diag_update which is no longer used
661    
662  2004-11-16  Douglas Bates  <bates@bates1-home>  2004-11-16  Douglas Bates  <bates@wisc.edu>
663    
664          * src/Metis_utils.c: Move metis.h include to C sources so that the          * src/Metis_utils.c: Move metis.h include to C sources so that the
665          .h file can be included.          .h file can be included.
666    
667  2004-11-12  Douglas Bates  <bates@bates1-home>  2004-11-12  Douglas Bates  <bates@wisc.edu>
668    
669          * src/LU.c,geMatrix.c,trMatrix.c, etc.:          * src/LU.c,geMatrix.c,trMatrix.c, etc.:
670          Complete allocation of slots in NEW_OBJECT.          Complete allocation of slots in NEW_OBJECT.
671    
672          * src/Mutils.h: Moved list of symbols to an include file          * src/Mutils.h: Moved list of symbols to an include file
673    
674  2004-11-11  Douglas Bates  <bates@bates1-home>  2004-11-11  Douglas Bates  <bates@wisc.edu>
675    
676          * src/geMutils.c (Matrix_init): remove unused function          * src/geMutils.c (Matrix_init): remove unused function
677    
678  2004-11-10  Douglas Bates  <bates@bates1-home>  2004-11-10  Douglas Bates  <bates@wisc.edu>
679    
680          * src/cscMatrix.c (csc_to_imagemat): removed unused function          * src/cscMatrix.c (csc_to_imagemat): removed unused function
681    
682  2004-11-05  Douglas Bates  <bates@bates1-home>  2004-11-05  Douglas Bates  <bates@wisc.edu>
683    
684          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
685    
686  2004-10-27  Douglas Bates  <bates@bates1-home>  2004-10-27  Douglas Bates  <bates@wisc.edu>
687    
688          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
689    
690  2004-10-04  Douglas Bates  <bates@bates1-home>  2004-10-04  Douglas Bates  <bates@wisc.edu>
691    
692          * src/init.c: Created R_init_Matrix and added registration of C          * src/init.c: Created R_init_Matrix and added registration of C
693          routines.          routines.
694    
695  2004-10-02  Douglas Bates  <bates@bates1-home>  2004-10-02  Douglas Bates  <bates@wisc.edu>
696    
697          * R/tripletMatrix.R: Force a require(lattice) for the image methods.          * R/tripletMatrix.R: Force a require(lattice) for the image methods.
698    
699  2004-06-15  Douglas Bates  <bates@bates7>  2004-06-15  Douglas Bates  <bates@wisc.edu>
700    
701          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
702    

Legend:
Removed from v.392  
changed lines
  Added in v.1268

root@r-forge.r-project.org
ViewVC Help
Powered by ViewVC 1.0.0  
Thanks to:
Vienna University of Economics and Business Powered By FusionForge