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revision 392, Tue Dec 14 20:01:16 2004 UTC revision 1238, Thu Mar 30 19:56:09 2006 UTC
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1  2004-12-14  Douglas Bates  <bates@bates1-home>  2006-03-30  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/dtCMatrix.R: allow coercion from  dgC* to triangular (dtC*)
4            * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
5    
6            * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
7            * tests/simple: (extended)
8    
9            * R/sparseMatrix.R (isTriangular): now using much improved
10            * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
11    
12    2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
13    
14            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
15            (problem report from Franklin Parlamis).  This should be done
16            generally.
17    
18    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
19    
20            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
21            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
22            update the plot methods.
23    
24    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
25    
26            * R/lmer.R (resid and ranef methods):  Added methods for the
27            "residuals" and "resid" generic but only for linear mixed model
28            fits.  Changed the ranef method to return a list of data frames so
29            that the plot methods now work.
30    
31    2006-03-16  Douglas Bates  <bates@bates2>
32    
33            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
34            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
35    
36            * DESCRIPTION (Date): New release
37    
38    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
39    
40            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
41    
42            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
43            * man/KNex.Rd: and other help files
44            * tests/*.R: several ones needed adaption
45            * inst/doc/Comparisons.Rnw: dito
46    
47    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
48    
49            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
50    
51            * tests/indexing.R: tests for new [<- methods for sparse matrices.
52    
53    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
54    
55            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
56    
57            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
58    
59    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
60    
61            * R/dMatrix.R: enable things like  M [ M < 10 ]
62            * R/dgeMatrix.R: implement it
63    
64    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
65    
66            * R/AllClass.R: define "summary.mer" and "*.lmer"
67            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
68            * R/lmer.R (show): now works with summary()
69    
70    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
71    
72            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
73            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
74                    support the above
75    
76    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
77    
78            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
79            Use glmFit$prior.weights for weights in a glmm.
80            Allow an option usePQL = FALSE to skip the PQL steps for the
81            Laplace method (and, in time, the AGQ method).
82    
83            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
84            into a separate function internal_mer_Xfactor to be able to call
85            it from internal_bhat.
86    
87    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
88    
89            * tests/Class+Meth.R (tstMatrixClass): function for much better
90            testing; now again of all actual classes.
91    
92            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
93                    use macros and define make_d_matrix_* and make_i_matrix_*
94                    where _i_ is for the ldense routines:
95    
96            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
97            * src/ldense.c (lsyMatrix_as_lgeMatrix):
98    
99            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
100    
101    
102    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
103    
104            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
105                    many different kinds of matrices.
106            * R/*.R: quite a few new methods were needed for R CMD check with
107                    new Matrix().  Very good for users playing around.
108    
109    
110    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
111    
112            * src/dgeMatrix.c (dMatrix_validate): new
113            * src/Mutils.c (dense_nonpacked_validate): new
114    
115            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
116    
117    
118    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
119    
120            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
121    
122    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
123    
124            * DESCRIPTION (Version): 0.99-6 released to CRAN
125    
126            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
127            segfault in cases with multiple non-nested grouping factors.
128    
129    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
130    
131            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
132                    (Depends): also on 'utils'
133    
134            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
135            * R/diagMatrix.R (Diagonal): constructor and methods for
136            diagonal matrices
137    
138            * R/ltTMatrix.R: new "minimal methods"
139    
140    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
141    
142            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
143            all methods (and help files).
144    
145    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
146    
147            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
148                    for case (dimn.  op  no_dimn.)
149    
150    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
151    
152            * DESCRIPTION (Version): 0.99-2  released to CRAN
153    
154    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
155    
156            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
157            by Julian Faraway.
158    
159    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
160    
161            * R/Auxiliaries.R (try_as): new utility
162            * R/sparseMatrix.R: use try_as() in coercion to original class
163    
164    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
165    
166            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
167    
168    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
169    
170            * R/Auxiliaries.R (dimNamesCheck): added
171    
172            * R/Matrix.R (as.array), (as.vector): new
173    
174    2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
175    
176            * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
177                    default.
178            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
179                    "pMatrix" now contains "sparseMatrix"
180    
181    2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
182    
183            * tests/Class+Meth.R: new tests; t(t(m)) == m
184    
185            * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
186    
187            * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
188            * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
189    
190            * R/dspMatrix.R: typo in "t" method
191    
192    2005-09-18  Douglas Bates  <bates@wisc.edu>
193    
194            * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
195            * R/Tsparse.R: instead of R/gTMatrix.R
196            * R/Csparse.R: new
197            * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
198            * src/Tsparse.c: new; many trivial methods calling cholmod_()
199            * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
200                            via cholmod
201    
202    2005-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
203    
204            * R/Auxiliaries.R (non0ind): new function using new C code
205            * src/dgCMatrix.c (compressed_non_0_ij): new utility
206    
207    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
208    
209            * src/chm_common.h: header file required by all C sources that
210            call CHOLMOD functions.  It defines a cholmod_common structure
211            called 'c' whose address is passed as the last argument to
212            (virtually) every CHOLMOD function.
213    
214            * src/Pattern.c: Simple example of the use of CHOLMOD.
215    
216            * src/init.c: initialize and finalize the cholmod_common structure.
217    
218            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
219            LDL and CCOLAMD from the U. of Florida sparse matrix library.
220    
221    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
222    
223            * inst/test-tools.R: new file collecting the utility functions used
224                    in ./tests/*.R
225    
226            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
227            * R/Matrix.R (cbind2): methods for NULL and missing
228    
229    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
230    
231            * R/AllClass.R: new "index" class for "[" and "[<-":
232                    First cut at "symmetricMatrix" and "triangularMatrix"
233            * R/gTMatrix.R (.ind.prep): new function;
234                    Logical and character indexing now work too.
235            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
236            * tests/indexing.R: new, including *.Rout.save
237            * tests/dgTMatrix.R: new
238    
239    2005-08-29  Douglas Bates  <bates@wisc.edu>
240    
241            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
242            indicator pos not being updated.  Also enforced upper triangular
243            for symmetric case.  Need to coerce edges component of elements of
244            edge list - grr! (Why don't they define their classes cleanly?)
245    
246    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
247    
248            * R/Matrix.R:  added first "[<-" methods; not yet functional
249            * R/denseMatrix.R: dito
250            * man/Subassign-methods.Rd: new help file for these
251    
252    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
253    
254            * DESCRIPTION (Version): 0.98-6
255    
256            * R/denseMatrix.R: new file for "[" fallback methods for all dense
257            matrices.
258    
259    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
260    
261            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
262                    as( <logical>, "matrix")
263    
264            * R/pMatrix.R: coercion to "lgTMatrix"
265    
266            * R/gTMatrix.R: new virtual class to define "[" methods for.
267            * man/gTMatrix-class.Rd:
268            * General slight re-organization of where "[" methods are defined.
269              more to come.
270    
271    2005-08-18  Douglas Bates  <bates@wisc.edu>
272    
273            * DESCRIPTION (Version): 0.98-5  released to CRAN
274    
275            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
276            * .....
277    
278    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
279    
280            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
281            or glmer objects.
282    
283    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
284    
285            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
286    
287    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
288    
289            * R/HBMM.R: finish re-writing R-only code.
290    
291    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
292    
293            * man/externalFormats.Rd: move documentation for writeHB and
294            writeMM here.
295    
296            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
297            (suggested by Paul Roecker).
298    
299            * tests/validObj.R (assertError): Comment out test that is failing
300            after recent changes in r-devel.
301    
302    
303    2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
304    
305            * R/AllClass.R: intermediate virtual class "denseMatrix"
306            * man/denseMatrix-class.Rd
307            * NAMESPACE: export it, and also export
308            * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
309    
310    2005-08-10  Douglas Bates  <bates@wisc.edu>
311    
312            * DESCRIPTION (Version): 0.98-3 to CRAN
313    
314            * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
315            matrix_solve code (which was really, really wrong).
316    
317    2005-08-07  Douglas Bates  <bates@wisc.edu>
318    
319            * DESCRIPTION (Version): 0.98-2
320    
321            * R/HBMM.R (readHB), (readMM): read Matrix Market formats
322    
323            * R/lmer.R (abbrvNms): new
324            * R/lmer.R (mcmcsamp): allow transformed parameters
325            * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
326            for the Harwell-Boeing and the MatrixMarket formats.
327    
328    2005-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
329    
330            * man/dtrMatrix-class.Rd: add examples
331            * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
332    
333            * TODO: note the dtpMatrix (docu) bug
334    
335            * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
336            in order to ensure that new as.matrix() is used by old functions,
337            e.g., svd(), qr(), eigen(), dist(),..;
338                  apply(), also matplot() or pairs().
339    
340    
341    2005-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
342    
343            * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
344              add comments about 'control' / lmerControl() arguments
345    
346    2005-07-27  Douglas Bates  <bates@wisc.edu>
347    
348            * man/sleepstudy.Rd: Added the sleep data set.
349            * DESCRIPTION (Version): 0.98-1  released to CRAN
350    
351    2005-07-12  Douglas Bates  <bates@wisc.edu>
352            * man/sleepstudy.Rd: Added the sleep data set.
353    
354            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
355            .Call calls that were producing spurious output.
356    
357    2005-07-05  Douglas Bates  <bates@wisc.edu>
358    
359            * R/lmer.R (lmer): stored updated variance component estimates in
360            mer object for the generalized model.  (Bug reported by Renaud
361            Lancelot).
362    
363    2005-07-03  Douglas Bates  <bates@wisc.edu>
364    
365            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
366            unidimensional case.
367    
368    2005-06-08  Douglas Bates  <bates@wisc.edu>
369    
370            * DESCRIPTION (Version): 0.96-1
371    
372            * moved  lmer-class' R and C code moved from lme4 to here
373    
374    2005-06-04  Douglas Bates  <bates@wisc.edu>
375    
376            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
377            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
378    
379    2005-06-02  Douglas Bates  <bates@wisc.edu>
380    
381            * src/Makefile.win: Forgot to update this when Makefile changed.
382    
383    2005-05-11  Douglas Bates  <bates@wisc.edu>
384    
385            * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
386            bug reported by Kurt Hornik and Michael Hahsler.
387    
388    2005-05-10  Douglas Bates  <bates@wisc.edu>
389    
390            * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
391            logical sparse matrices.  These will also be used in the symbolic
392            analysis for lmer objects.
393    
394            * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
395            of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
396    
397    2005-05-06  Douglas Bates  <bates@wisc.edu>
398    
399            * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
400            colMeans, colSums, rowMeans and rowSums.
401    
402    2005-04-18  Douglas Bates  <bates@wisc.edu>
403    
404            * src/lgCMatrix.[ch]: code for _validate method and stub for
405            multiplication operation.
406    
407            * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
408            to dgetrs.
409    
410            * src/init.c: Fix cut-and-paste error in definition of
411            dgeMatrix_matrix_solve
412    
413            * src/{many files}: Tighten code by using ALLOC_SLOT.
414    
415    2005-04-15  Douglas Bates  <bates@wisc.edu>
416    
417            * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
418    
419            * DESCRIPTION: Eliminate import of stats.
420    
421    
422    2005-04-06  Douglas Bates  <bates@wisc.edu>
423    
424            * R/AllClass.R : add logical sparse matrix classes
425    
426    2005-04-01  Martin Maechler  <maechler@stat.math.ethz.ch>
427    
428            * R/dgTMatrix.R: add "[" method for triplet matrices
429            * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
430    
431    2005-03-31  Douglas Bates  <bates@wisc.edu>
432    
433            * DESCRIPTION (Version): release 0.95-5 to CRAN
434    
435            * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
436            * R/sparseMatrix.R: %*%, crossprod()
437            * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
438            * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
439            * src/lmer.c (lmer_fitted): fix thinko
440    
441    2005-03-26  Martin Maechler  <maechler@stat.math.ethz.ch>
442    
443            * R/AllClass.R: add two virtual sparse classes ``on top''
444    
445    2005-03-24  Martin Maechler  <maechler@stat.math.ethz.ch>
446    
447            * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
448                    correspondingly fix examples and tests/ since new()
449                    doesn't work for virtual classes.
450    
451    2005-03-17  Martin Maechler  <maechler@stat.math.ethz.ch>
452    
453            * R/Matrix.R (as.matrix): method and one for unname()
454            * tests/dpoMatrix.R: tests should now be less platform dependent;
455              also run for R 2.1.0; using as.matrix()
456    
457    2005-03-15  Douglas Bates  <bates@wisc.edu>
458    
459            * R/pMatrix.R: "pMatrix" class added
460            * ....
461    
462    2005-03-14  Douglas Bates  <bates@wisc.edu>
463    
464            * R/dtpMatrix.R: Add unpack method and an example.
465    
466            * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
467            of general symmetric matrices and associated S4 methods.
468    
469    2005-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
470            +
471    2005-03-05  Martin Maechler  <maechler@stat.math.ethz.ch>
472    
473            * R/dgeMatrix.R (setAs): and many other files: more coercion,
474              crossprod() and "%*%" methods added; tests, too.
475            * tests/matprod.R: new, for testing these
476    
477    2005-03-03  Douglas Bates  <bates@wisc.edu>
478    
479            * src/lmer.c (lmer_fitted): Added.
480    
481    2005-03-02  Douglas Bates  <bates@wisc.edu>
482    
483            * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
484    
485    2005-02-28  Douglas Bates  <bates@wisc.edu>
486    
487            * src/*.c,po/,inst/po: Internationalization and localization of
488            the package.
489    
490            * src/ldl.[ch]: Removed these as their contents are referenced in the
491            R_ldl.c file.
492    
493            * src/flame.[ch]: Removed these source files.
494    
495            * src/dtrMatrix.c (make_array_triangular): Move to Mutils
496    
497            * src/LU.[ch],src/init.c: absorb in factorizations
498    
499            * src/Mutils.h: prepare for internationalization
500    
501            * src/cblas.h: move the enum definitions to Mutils.h and remove
502            this file
503    
504    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
505    
506            * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
507    
508            * R/dtrMatrix.R: fix t() method
509    
510            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
511            * NAMESPACE: export them (and import generics from "methods")
512            * tests/group-methods.R : and test them.
513    
514            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
515            border case
516    
517    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
518    
519            * DESCRIPTION (Version): 0.95-2  released to CRAN
520    
521            * src/dgBCMatrix.c:
522            * src/lmer.c: many changes
523            * ...
524    
525    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
526    
527            * R/Matrix.R: add more sophisticated show() method.
528    
529    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
530    
531            * */* : almost complete reorganization of classes.
532    
533    2005-01-26  Douglas Bates  <bates@wisc.edu>
534    
535            * R/AllGeneric.R: Added matrix exponential generic expm and a method
536            for the geMatrix class.
537    
538    2005-01-24  Douglas Bates  <bates@wisc.edu>
539    
540            * src/Makefile (clean): Remove *.a and *.so
541    
542            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
543    
544    2005-01-23  Douglas Bates  <bates@wisc.edu>
545    
546            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
547            had an effect in cases with more than 2 grouping factors.
548    
549    2005-01-03  Douglas Bates  <bates@wisc.edu>
550    
551            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
552    
553    2004-12-23  Douglas Bates  <bates@wisc.edu>
554    
555            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
556            and R_useDynamicSymbols (suggested by B.D.Ripley).
557    
558    2004-12-14  Douglas Bates  <bates@wisc.edu>
559    
560          * R/sscMatrix.R: Add determinant methods          * R/sscMatrix.R: Add determinant methods
561    
562          * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion          * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
563          for tripletMatrix to matrix.          for tripletMatrix to matrix.
564    
565  2004-12-13  Douglas Bates  <bates@bates1-home>  2004-12-13  Douglas Bates  <bates@wisc.edu>
566    
567          * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is          * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
568          no longer used.          no longer used.
# Line 17  Line 574 
574          for multivariate random effects with multiple grouping factors.          for multivariate random effects with multiple grouping factors.
575          Fixes part but not all of #15.          Fixes part but not all of #15.
576    
577  2004-12-03  Douglas Bates  <bates@bates1-home>  2004-12-03  Douglas Bates  <bates@wisc.edu>
578    
579          * src/lmeRep.c (lmeRep_factor): order of operations for multiple          * src/lmeRep.c (lmeRep_factor): order of operations for multiple
580          scalar grouping factors corrected.          scalar grouping factors corrected.
581    
582  2004-11-29  Douglas Bates  <bates@bates1-home>  2004-11-29  Douglas Bates  <bates@wisc.edu>
583    
584          * src/bCrosstab.c: remove diag_update which is no longer used          * src/bCrosstab.c: remove diag_update which is no longer used
585    
586  2004-11-16  Douglas Bates  <bates@bates1-home>  2004-11-16  Douglas Bates  <bates@wisc.edu>
587    
588          * src/Metis_utils.c: Move metis.h include to C sources so that the          * src/Metis_utils.c: Move metis.h include to C sources so that the
589          .h file can be included.          .h file can be included.
590    
591  2004-11-12  Douglas Bates  <bates@bates1-home>  2004-11-12  Douglas Bates  <bates@wisc.edu>
592    
593          * src/LU.c,geMatrix.c,trMatrix.c, etc.:          * src/LU.c,geMatrix.c,trMatrix.c, etc.:
594          Complete allocation of slots in NEW_OBJECT.          Complete allocation of slots in NEW_OBJECT.
595    
596          * src/Mutils.h: Moved list of symbols to an include file          * src/Mutils.h: Moved list of symbols to an include file
597    
598  2004-11-11  Douglas Bates  <bates@bates1-home>  2004-11-11  Douglas Bates  <bates@wisc.edu>
599    
600          * src/geMutils.c (Matrix_init): remove unused function          * src/geMutils.c (Matrix_init): remove unused function
601    
602  2004-11-10  Douglas Bates  <bates@bates1-home>  2004-11-10  Douglas Bates  <bates@wisc.edu>
603    
604          * src/cscMatrix.c (csc_to_imagemat): removed unused function          * src/cscMatrix.c (csc_to_imagemat): removed unused function
605    
606  2004-11-05  Douglas Bates  <bates@bates1-home>  2004-11-05  Douglas Bates  <bates@wisc.edu>
607    
608          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
609    
610  2004-10-27  Douglas Bates  <bates@bates1-home>  2004-10-27  Douglas Bates  <bates@wisc.edu>
611    
612          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
613    
614  2004-10-04  Douglas Bates  <bates@bates1-home>  2004-10-04  Douglas Bates  <bates@wisc.edu>
615    
616          * src/init.c: Created R_init_Matrix and added registration of C          * src/init.c: Created R_init_Matrix and added registration of C
617          routines.          routines.
618    
619  2004-10-02  Douglas Bates  <bates@bates1-home>  2004-10-02  Douglas Bates  <bates@wisc.edu>
620    
621          * R/tripletMatrix.R: Force a require(lattice) for the image methods.          * R/tripletMatrix.R: Force a require(lattice) for the image methods.
622    
623  2004-06-15  Douglas Bates  <bates@bates7>  2004-06-15  Douglas Bates  <bates@wisc.edu>
624    
625          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
626    

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