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revision 392, Tue Dec 14 20:01:16 2004 UTC revision 1234, Tue Mar 21 12:33:28 2006 UTC
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1  2004-12-14  Douglas Bates  <bates@bates1-home>  2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
2    
3            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
4            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
5            update the plot methods.
6    
7    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
8    
9            * R/lmer.R (resid and ranef methods):  Added methods for the
10            "residuals" and "resid" generic but only for linear mixed model
11            fits.  Changed the ranef method to return a list of data frames so
12            that the plot methods now work.
13    
14    2006-03-16  Douglas Bates  <bates@bates2>
15    
16            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
17            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
18    
19            * DESCRIPTION (Date): New release
20    
21    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
22    
23            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
24    
25            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
26            * man/KNex.Rd: and other help files
27            * tests/*.R: several ones needed adaption
28            * inst/doc/Comparisons.Rnw: dito
29    
30    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
31    
32            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
33    
34            * tests/indexing.R: tests for new [<- methods for sparse matrices.
35    
36    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
37    
38            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
39    
40            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
41    
42    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
43    
44            * R/dMatrix.R: enable things like  M [ M < 10 ]
45            * R/dgeMatrix.R: implement it
46    
47    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
48    
49            * R/AllClass.R: define "summary.mer" and "*.lmer"
50            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
51            * R/lmer.R (show): now works with summary()
52    
53    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
54    
55            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
56            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
57                    support the above
58    
59    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
60    
61            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
62            Use glmFit$prior.weights for weights in a glmm.
63            Allow an option usePQL = FALSE to skip the PQL steps for the
64            Laplace method (and, in time, the AGQ method).
65    
66            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
67            into a separate function internal_mer_Xfactor to be able to call
68            it from internal_bhat.
69    
70    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
71    
72            * tests/Class+Meth.R (tstMatrixClass): function for much better
73            testing; now again of all actual classes.
74    
75            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
76                    use macros and define make_d_matrix_* and make_i_matrix_*
77                    where _i_ is for the ldense routines:
78    
79            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
80            * src/ldense.c (lsyMatrix_as_lgeMatrix):
81    
82            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
83    
84    
85    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
86    
87            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
88                    many different kinds of matrices.
89            * R/*.R: quite a few new methods were needed for R CMD check with
90                    new Matrix().  Very good for users playing around.
91    
92    
93    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
94    
95            * src/dgeMatrix.c (dMatrix_validate): new
96            * src/Mutils.c (dense_nonpacked_validate): new
97    
98            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
99    
100    
101    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
102    
103            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
104    
105    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
106    
107            * DESCRIPTION (Version): 0.99-6 released to CRAN
108    
109            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
110            segfault in cases with multiple non-nested grouping factors.
111    
112    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
113    
114            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
115                    (Depends): also on 'utils'
116    
117            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
118            * R/diagMatrix.R (Diagonal): constructor and methods for
119            diagonal matrices
120    
121            * R/ltTMatrix.R: new "minimal methods"
122    
123    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
124    
125            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
126            all methods (and help files).
127    
128    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
129    
130            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
131                    for case (dimn.  op  no_dimn.)
132    
133    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
134    
135            * DESCRIPTION (Version): 0.99-2  released to CRAN
136    
137    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
138    
139            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
140            by Julian Faraway.
141    
142    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
143    
144            * R/Auxiliaries.R (try_as): new utility
145            * R/sparseMatrix.R: use try_as() in coercion to original class
146    
147    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
148    
149            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
150    
151    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
152    
153            * R/Auxiliaries.R (dimNamesCheck): added
154    
155            * R/Matrix.R (as.array), (as.vector): new
156    
157    2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
158    
159            * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
160                    default.
161            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
162                    "pMatrix" now contains "sparseMatrix"
163    
164    2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
165    
166            * tests/Class+Meth.R: new tests; t(t(m)) == m
167    
168            * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
169    
170            * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
171            * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
172    
173            * R/dspMatrix.R: typo in "t" method
174    
175    2005-09-18  Douglas Bates  <bates@wisc.edu>
176    
177            * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
178            * R/Tsparse.R: instead of R/gTMatrix.R
179            * R/Csparse.R: new
180            * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
181            * src/Tsparse.c: new; many trivial methods calling cholmod_()
182            * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
183                            via cholmod
184    
185    2005-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
186    
187            * R/Auxiliaries.R (non0ind): new function using new C code
188            * src/dgCMatrix.c (compressed_non_0_ij): new utility
189    
190    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
191    
192            * src/chm_common.h: header file required by all C sources that
193            call CHOLMOD functions.  It defines a cholmod_common structure
194            called 'c' whose address is passed as the last argument to
195            (virtually) every CHOLMOD function.
196    
197            * src/Pattern.c: Simple example of the use of CHOLMOD.
198    
199            * src/init.c: initialize and finalize the cholmod_common structure.
200    
201            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
202            LDL and CCOLAMD from the U. of Florida sparse matrix library.
203    
204    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
205    
206            * inst/test-tools.R: new file collecting the utility functions used
207                    in ./tests/*.R
208    
209            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
210            * R/Matrix.R (cbind2): methods for NULL and missing
211    
212    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
213    
214            * R/AllClass.R: new "index" class for "[" and "[<-":
215                    First cut at "symmetricMatrix" and "triangularMatrix"
216            * R/gTMatrix.R (.ind.prep): new function;
217                    Logical and character indexing now work too.
218            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
219            * tests/indexing.R: new, including *.Rout.save
220            * tests/dgTMatrix.R: new
221    
222    2005-08-29  Douglas Bates  <bates@wisc.edu>
223    
224            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
225            indicator pos not being updated.  Also enforced upper triangular
226            for symmetric case.  Need to coerce edges component of elements of
227            edge list - grr! (Why don't they define their classes cleanly?)
228    
229    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
230    
231            * R/Matrix.R:  added first "[<-" methods; not yet functional
232            * R/denseMatrix.R: dito
233            * man/Subassign-methods.Rd: new help file for these
234    
235    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
236    
237            * DESCRIPTION (Version): 0.98-6
238    
239            * R/denseMatrix.R: new file for "[" fallback methods for all dense
240            matrices.
241    
242    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
243    
244            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
245                    as( <logical>, "matrix")
246    
247            * R/pMatrix.R: coercion to "lgTMatrix"
248    
249            * R/gTMatrix.R: new virtual class to define "[" methods for.
250            * man/gTMatrix-class.Rd:
251            * General slight re-organization of where "[" methods are defined.
252              more to come.
253    
254    2005-08-18  Douglas Bates  <bates@wisc.edu>
255    
256            * DESCRIPTION (Version): 0.98-5  released to CRAN
257    
258            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
259            * .....
260    
261    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
262    
263            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
264            or glmer objects.
265    
266    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
267    
268            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
269    
270    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
271    
272            * R/HBMM.R: finish re-writing R-only code.
273    
274    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
275    
276            * man/externalFormats.Rd: move documentation for writeHB and
277            writeMM here.
278    
279            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
280            (suggested by Paul Roecker).
281    
282            * tests/validObj.R (assertError): Comment out test that is failing
283            after recent changes in r-devel.
284    
285    
286    2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
287    
288            * R/AllClass.R: intermediate virtual class "denseMatrix"
289            * man/denseMatrix-class.Rd
290            * NAMESPACE: export it, and also export
291            * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
292    
293    2005-08-10  Douglas Bates  <bates@wisc.edu>
294    
295            * DESCRIPTION (Version): 0.98-3 to CRAN
296    
297            * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
298            matrix_solve code (which was really, really wrong).
299    
300    2005-08-07  Douglas Bates  <bates@wisc.edu>
301    
302            * DESCRIPTION (Version): 0.98-2
303    
304            * R/HBMM.R (readHB), (readMM): read Matrix Market formats
305    
306            * R/lmer.R (abbrvNms): new
307            * R/lmer.R (mcmcsamp): allow transformed parameters
308            * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
309            for the Harwell-Boeing and the MatrixMarket formats.
310    
311    2005-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
312    
313            * man/dtrMatrix-class.Rd: add examples
314            * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
315    
316            * TODO: note the dtpMatrix (docu) bug
317    
318            * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
319            in order to ensure that new as.matrix() is used by old functions,
320            e.g., svd(), qr(), eigen(), dist(),..;
321                  apply(), also matplot() or pairs().
322    
323    
324    2005-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
325    
326            * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
327              add comments about 'control' / lmerControl() arguments
328    
329    2005-07-27  Douglas Bates  <bates@wisc.edu>
330    
331            * man/sleepstudy.Rd: Added the sleep data set.
332            * DESCRIPTION (Version): 0.98-1  released to CRAN
333    
334    2005-07-12  Douglas Bates  <bates@wisc.edu>
335            * man/sleepstudy.Rd: Added the sleep data set.
336    
337            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
338            .Call calls that were producing spurious output.
339    
340    2005-07-05  Douglas Bates  <bates@wisc.edu>
341    
342            * R/lmer.R (lmer): stored updated variance component estimates in
343            mer object for the generalized model.  (Bug reported by Renaud
344            Lancelot).
345    
346    2005-07-03  Douglas Bates  <bates@wisc.edu>
347    
348            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
349            unidimensional case.
350    
351    2005-06-08  Douglas Bates  <bates@wisc.edu>
352    
353            * DESCRIPTION (Version): 0.96-1
354    
355            * moved  lmer-class' R and C code moved from lme4 to here
356    
357    2005-06-04  Douglas Bates  <bates@wisc.edu>
358    
359            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
360            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
361    
362    2005-06-02  Douglas Bates  <bates@wisc.edu>
363    
364            * src/Makefile.win: Forgot to update this when Makefile changed.
365    
366    2005-05-11  Douglas Bates  <bates@wisc.edu>
367    
368            * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
369            bug reported by Kurt Hornik and Michael Hahsler.
370    
371    2005-05-10  Douglas Bates  <bates@wisc.edu>
372    
373            * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
374            logical sparse matrices.  These will also be used in the symbolic
375            analysis for lmer objects.
376    
377            * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
378            of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
379    
380    2005-05-06  Douglas Bates  <bates@wisc.edu>
381    
382            * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
383            colMeans, colSums, rowMeans and rowSums.
384    
385    2005-04-18  Douglas Bates  <bates@wisc.edu>
386    
387            * src/lgCMatrix.[ch]: code for _validate method and stub for
388            multiplication operation.
389    
390            * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
391            to dgetrs.
392    
393            * src/init.c: Fix cut-and-paste error in definition of
394            dgeMatrix_matrix_solve
395    
396            * src/{many files}: Tighten code by using ALLOC_SLOT.
397    
398    2005-04-15  Douglas Bates  <bates@wisc.edu>
399    
400            * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
401    
402            * DESCRIPTION: Eliminate import of stats.
403    
404    
405    2005-04-06  Douglas Bates  <bates@wisc.edu>
406    
407            * R/AllClass.R : add logical sparse matrix classes
408    
409    2005-04-01  Martin Maechler  <maechler@stat.math.ethz.ch>
410    
411            * R/dgTMatrix.R: add "[" method for triplet matrices
412            * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
413    
414    2005-03-31  Douglas Bates  <bates@wisc.edu>
415    
416            * DESCRIPTION (Version): release 0.95-5 to CRAN
417    
418            * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
419            * R/sparseMatrix.R: %*%, crossprod()
420            * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
421            * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
422            * src/lmer.c (lmer_fitted): fix thinko
423    
424    2005-03-26  Martin Maechler  <maechler@stat.math.ethz.ch>
425    
426            * R/AllClass.R: add two virtual sparse classes ``on top''
427    
428    2005-03-24  Martin Maechler  <maechler@stat.math.ethz.ch>
429    
430            * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
431                    correspondingly fix examples and tests/ since new()
432                    doesn't work for virtual classes.
433    
434    2005-03-17  Martin Maechler  <maechler@stat.math.ethz.ch>
435    
436            * R/Matrix.R (as.matrix): method and one for unname()
437            * tests/dpoMatrix.R: tests should now be less platform dependent;
438              also run for R 2.1.0; using as.matrix()
439    
440    2005-03-15  Douglas Bates  <bates@wisc.edu>
441    
442            * R/pMatrix.R: "pMatrix" class added
443            * ....
444    
445    2005-03-14  Douglas Bates  <bates@wisc.edu>
446    
447            * R/dtpMatrix.R: Add unpack method and an example.
448    
449            * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
450            of general symmetric matrices and associated S4 methods.
451    
452    2005-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
453            +
454    2005-03-05  Martin Maechler  <maechler@stat.math.ethz.ch>
455    
456            * R/dgeMatrix.R (setAs): and many other files: more coercion,
457              crossprod() and "%*%" methods added; tests, too.
458            * tests/matprod.R: new, for testing these
459    
460    2005-03-03  Douglas Bates  <bates@wisc.edu>
461    
462            * src/lmer.c (lmer_fitted): Added.
463    
464    2005-03-02  Douglas Bates  <bates@wisc.edu>
465    
466            * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
467    
468    2005-02-28  Douglas Bates  <bates@wisc.edu>
469    
470            * src/*.c,po/,inst/po: Internationalization and localization of
471            the package.
472    
473            * src/ldl.[ch]: Removed these as their contents are referenced in the
474            R_ldl.c file.
475    
476            * src/flame.[ch]: Removed these source files.
477    
478            * src/dtrMatrix.c (make_array_triangular): Move to Mutils
479    
480            * src/LU.[ch],src/init.c: absorb in factorizations
481    
482            * src/Mutils.h: prepare for internationalization
483    
484            * src/cblas.h: move the enum definitions to Mutils.h and remove
485            this file
486    
487    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
488    
489            * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
490    
491            * R/dtrMatrix.R: fix t() method
492    
493            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
494            * NAMESPACE: export them (and import generics from "methods")
495            * tests/group-methods.R : and test them.
496    
497            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
498            border case
499    
500    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
501    
502            * DESCRIPTION (Version): 0.95-2  released to CRAN
503    
504            * src/dgBCMatrix.c:
505            * src/lmer.c: many changes
506            * ...
507    
508    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
509    
510            * R/Matrix.R: add more sophisticated show() method.
511    
512    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
513    
514            * */* : almost complete reorganization of classes.
515    
516    2005-01-26  Douglas Bates  <bates@wisc.edu>
517    
518            * R/AllGeneric.R: Added matrix exponential generic expm and a method
519            for the geMatrix class.
520    
521    2005-01-24  Douglas Bates  <bates@wisc.edu>
522    
523            * src/Makefile (clean): Remove *.a and *.so
524    
525            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
526    
527    2005-01-23  Douglas Bates  <bates@wisc.edu>
528    
529            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
530            had an effect in cases with more than 2 grouping factors.
531    
532    2005-01-03  Douglas Bates  <bates@wisc.edu>
533    
534            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
535    
536    2004-12-23  Douglas Bates  <bates@wisc.edu>
537    
538            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
539            and R_useDynamicSymbols (suggested by B.D.Ripley).
540    
541    2004-12-14  Douglas Bates  <bates@wisc.edu>
542    
543          * R/sscMatrix.R: Add determinant methods          * R/sscMatrix.R: Add determinant methods
544    
545          * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion          * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
546          for tripletMatrix to matrix.          for tripletMatrix to matrix.
547    
548  2004-12-13  Douglas Bates  <bates@bates1-home>  2004-12-13  Douglas Bates  <bates@wisc.edu>
549    
550          * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is          * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
551          no longer used.          no longer used.
# Line 17  Line 557 
557          for multivariate random effects with multiple grouping factors.          for multivariate random effects with multiple grouping factors.
558          Fixes part but not all of #15.          Fixes part but not all of #15.
559    
560  2004-12-03  Douglas Bates  <bates@bates1-home>  2004-12-03  Douglas Bates  <bates@wisc.edu>
561    
562          * src/lmeRep.c (lmeRep_factor): order of operations for multiple          * src/lmeRep.c (lmeRep_factor): order of operations for multiple
563          scalar grouping factors corrected.          scalar grouping factors corrected.
564    
565  2004-11-29  Douglas Bates  <bates@bates1-home>  2004-11-29  Douglas Bates  <bates@wisc.edu>
566    
567          * src/bCrosstab.c: remove diag_update which is no longer used          * src/bCrosstab.c: remove diag_update which is no longer used
568    
569  2004-11-16  Douglas Bates  <bates@bates1-home>  2004-11-16  Douglas Bates  <bates@wisc.edu>
570    
571          * src/Metis_utils.c: Move metis.h include to C sources so that the          * src/Metis_utils.c: Move metis.h include to C sources so that the
572          .h file can be included.          .h file can be included.
573    
574  2004-11-12  Douglas Bates  <bates@bates1-home>  2004-11-12  Douglas Bates  <bates@wisc.edu>
575    
576          * src/LU.c,geMatrix.c,trMatrix.c, etc.:          * src/LU.c,geMatrix.c,trMatrix.c, etc.:
577          Complete allocation of slots in NEW_OBJECT.          Complete allocation of slots in NEW_OBJECT.
578    
579          * src/Mutils.h: Moved list of symbols to an include file          * src/Mutils.h: Moved list of symbols to an include file
580    
581  2004-11-11  Douglas Bates  <bates@bates1-home>  2004-11-11  Douglas Bates  <bates@wisc.edu>
582    
583          * src/geMutils.c (Matrix_init): remove unused function          * src/geMutils.c (Matrix_init): remove unused function
584    
585  2004-11-10  Douglas Bates  <bates@bates1-home>  2004-11-10  Douglas Bates  <bates@wisc.edu>
586    
587          * src/cscMatrix.c (csc_to_imagemat): removed unused function          * src/cscMatrix.c (csc_to_imagemat): removed unused function
588    
589  2004-11-05  Douglas Bates  <bates@bates1-home>  2004-11-05  Douglas Bates  <bates@wisc.edu>
590    
591          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
592    
593  2004-10-27  Douglas Bates  <bates@bates1-home>  2004-10-27  Douglas Bates  <bates@wisc.edu>
594    
595          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
596    
597  2004-10-04  Douglas Bates  <bates@bates1-home>  2004-10-04  Douglas Bates  <bates@wisc.edu>
598    
599          * src/init.c: Created R_init_Matrix and added registration of C          * src/init.c: Created R_init_Matrix and added registration of C
600          routines.          routines.
601    
602  2004-10-02  Douglas Bates  <bates@bates1-home>  2004-10-02  Douglas Bates  <bates@wisc.edu>
603    
604          * R/tripletMatrix.R: Force a require(lattice) for the image methods.          * R/tripletMatrix.R: Force a require(lattice) for the image methods.
605    
606  2004-06-15  Douglas Bates  <bates@bates7>  2004-06-15  Douglas Bates  <bates@wisc.edu>
607    
608          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
609    

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