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revision 388, Mon Dec 13 16:00:22 2004 UTC revision 820, Wed Jul 27 23:07:04 2005 UTC
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1    2005-07-27  Douglas Bates  <bates@localhost.localdomain>
2    
3            * man/sleep.Rd: Added the sleep data set.
4    
5    2005-07-12  Douglas Bates  <bates@localhost.localdomain>
6    
7            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
8            .Call calls that were producing spurious output.
9    
10    2005-07-05  Douglas Bates  <bates@bates1-home>
11    
12            * R/lmer.R (lmer): stored updated variance component estimates in
13            mer object for the generalized model.  (Bug reported by Renaud
14            Lancelot).
15    
16    2005-07-03  Douglas Bates  <bates@bates1-home>
17    
18            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
19            unidimensional case.
20    
21    2005-06-08  Douglas Bates  <bates@bates1-home>
22    
23            * DESCRIPTION (Version): 0.96-1
24    
25            * moved  lmer-class' R and C code moved from lme4 to here
26    
27    2005-06-04  Douglas Bates  <bates@bates1-home>
28    
29            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
30            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
31    
32    2005-06-02  Douglas Bates  <bates@bates1-home>
33    
34            * src/Makefile.win: Forgot to update this when Makefile changed.
35    
36    2005-05-11  Douglas Bates  <bates@bates1-home>
37    
38            * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
39            bug reported by Kurt Hornik and Michael Hahsler.
40    
41    2005-05-10  Douglas Bates  <bates@bates1-home>
42    
43            * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
44            logical sparse matrices.  These will also be used in the symbolic
45            analysis for lmer objects.
46    
47            * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
48            of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
49    
50    2005-05-06  Douglas Bates  <bates@bates1-home>
51    
52            * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
53            colMeans, colSums, rowMeans and rowSums.
54    
55    2005-04-18  Douglas Bates  <bates@bates1-home>
56    
57            * src/lgCMatrix.[ch]: code for _validate method and stub for
58            multiplication operation.
59    
60            * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
61            to dgetrs.
62    
63            * src/init.c: Fix cut-and-paste error in definition of
64            dgeMatrix_matrix_solve
65    
66            * src/{many files}: Tighten code by using ALLOC_SLOT.
67    
68    2005-04-15  Douglas Bates  <bates@bates1-home>
69    
70            * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
71    
72            * DESCRIPTION: Eliminate import of stats.
73    
74    
75    2005-04-06  Douglas Bates  <bates@bates1-home>
76    
77            * R/AllClass.R : add logical sparse matrix classes
78    
79    2005-04-01  Martin Maechler  <maechler@stat.math.ethz.ch>
80    
81            * R/dgTMatrix.R: add "[" method for triplet matrices
82            * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
83    
84    2005-03-31  Douglas Bates  <bates@bates1-home>
85    
86            * DESCRIPTION (Version): release 0.95-5 to CRAN
87    
88            * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
89            * R/sparseMatrix.R: %*%, crossprod()
90            * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
91            * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
92            * src/lmer.c (lmer_fitted): fix thinko
93    
94    2005-03-26  Martin Maechler  <maechler@stat.math.ethz.ch>
95    
96            * R/AllClass.R: add two virtual sparse classes ``on top''
97    
98    2005-03-24  Martin Maechler  <maechler@stat.math.ethz.ch>
99    
100            * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
101                    correspondingly fix examples and tests/ since new()
102                    doesn't work for virtual classes.
103    
104    2005-03-17  Martin Maechler  <maechler@stat.math.ethz.ch>
105    
106            * R/Matrix.R (as.matrix): method and one for unname()
107            * tests/dpoMatrix.R: tests should now be less platform dependent;
108              also run for R 2.1.0; using as.matrix()
109    
110    2005-03-15  Douglas Bates  <bates@bates1-home>
111    
112            * R/pMatrix.R: "pMatrix" class added
113            * ....
114    
115    2005-03-14  Douglas Bates  <bates@bates1-home>
116    
117            * R/dtpMatrix.R: Add unpack method and an example.
118    
119            * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
120            of general symmetric matrices and associated S4 methods.
121    
122    2005-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
123            +
124    2005-03-05  Martin Maechler  <maechler@stat.math.ethz.ch>
125    
126            * R/dgeMatrix.R (setAs): and many other files: more coercion,
127              crossprod() and "%*%" methods added; tests, too.
128            * tests/matprod.R: new, for testing these
129    
130    2005-03-03  Douglas Bates  <bates@bates1-home>
131    
132            * src/lmer.c (lmer_fitted): Added.
133    
134    2005-03-02  Douglas Bates  <bates@bates1-home>
135    
136            * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
137    
138    2005-02-28  Douglas Bates  <bates@bates1-home>
139    
140            * src/*.c,po/,inst/po: Internationalization and localization of
141            the package.
142    
143            * src/ldl.[ch]: Removed these as their contents are referenced in the
144            R_ldl.c file.
145    
146            * src/flame.[ch]: Removed these source files.
147    
148            * src/dtrMatrix.c (make_array_triangular): Move to Mutils
149    
150            * src/LU.[ch],src/init.c: absorb in factorizations
151    
152            * src/Mutils.h: prepare for internationalization
153    
154            * src/cblas.h: move the enum definitions to Mutils.h and remove
155            this file
156    
157    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
158    
159            * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
160    
161            * R/dtrMatrix.R: fix t() method
162    
163            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
164            * NAMESPACE: export them (and import generics from "methods")
165            * tests/group-methods.R : and test them.
166    
167            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
168            border case
169    
170    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
171    
172            * DESCRIPTION (Version): 0.95-2  released to CRAN
173    
174            * src/dgBCMatrix.c:
175            * src/lmer.c: many changes
176            * ...
177    
178    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
179    
180            * R/Matrix.R: add more sophisticated show() method.
181    
182    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
183    
184            * */* : almost complete reorganization of classes.
185    
186    2005-01-26  Douglas Bates  <bates@bates7>
187    
188            * R/AllGeneric.R: Added matrix exponential generic expm and a method
189            for the geMatrix class.
190    
191    2005-01-24  Douglas Bates  <bates@bates7>
192    
193            * src/Makefile (clean): Remove *.a and *.so
194    
195            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
196    
197    2005-01-23  Douglas Bates  <bates@bates7>
198    
199            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
200            had an effect in cases with more than 2 grouping factors.
201    
202    2005-01-03  Douglas Bates  <bates@bates1-home>
203    
204            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
205    
206    2004-12-23  Douglas Bates  <bates@bates1-home>
207    
208            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
209            and R_useDynamicSymbols (suggested by B.D.Ripley).
210    
211    2004-12-14  Douglas Bates  <bates@bates1-home>
212    
213            * R/sscMatrix.R: Add determinant methods
214    
215            * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
216            for tripletMatrix to matrix.
217    
218  2004-12-13  Douglas Bates  <bates@bates1-home>  2004-12-13  Douglas Bates  <bates@bates1-home>
219    
220            * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
221            no longer used.
222    
223          * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files          * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
224          with dynamic allocation of scratch arrays.          with dynamic allocation of scratch arrays.
225    

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