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Diff of /pkg/ChangeLog

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revision 388, Mon Dec 13 16:00:22 2004 UTC revision 763, Mon Jun 6 15:53:08 2005 UTC
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1    2005-06-04  Douglas Bates  <bates@bates1-home>
2    
3            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
4            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
5    
6    2005-06-02  Douglas Bates  <bates@bates1-home>
7    
8            * src/Makefile.win: Forgot to update this when Makefile changed.
9    
10    2005-05-11  Douglas Bates  <bates@bates1-home>
11    
12            * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
13            bug reported by Kurt Hornik and Michael Hahsler.
14    
15    2005-05-10  Douglas Bates  <bates@bates1-home>
16    
17            * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
18            logical sparse matrices.  These will also be used in the symbolic
19            analysis for lmer objects.
20    
21            * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
22            of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
23    
24    2005-05-06  Douglas Bates  <bates@bates1-home>
25    
26            * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
27            colMeans, colSums, rowMeans and rowSums.
28    
29    2005-04-18  Douglas Bates  <bates@bates1-home>
30    
31            * src/lgCMatrix.[ch]: code for _validate method and stub for
32            multiplication operation.
33    
34            * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
35            to dgetrs.
36    
37            * src/init.c: Fix cut-and-paste error in definition of
38            dgeMatrix_matrix_solve
39    
40            * src/{many files}: Tighten code by using ALLOC_SLOT.
41    
42    2005-04-15  Douglas Bates  <bates@bates1-home>
43    
44            * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
45    
46            * DESCRIPTION: Eliminate import of stats.
47    
48    
49    2005-04-06  Douglas Bates  <bates@bates1-home>
50    
51            * R/AllClass.R : add logical sparse matrix classes
52    
53    2005-04-01  Martin Maechler  <maechler@stat.math.ethz.ch>
54    
55            * R/dgTMatrix.R: add "[" method for triplet matrices
56            * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
57    
58    2005-03-31  Douglas Bates  <bates@bates1-home>
59    
60            * DESCRIPTION (Version): release 0.95-5 to CRAN
61    
62            * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
63            * R/sparseMatrix.R: %*%, crossprod()
64            * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
65            * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
66            * src/lmer.c (lmer_fitted): fix thinko
67    
68    2005-03-26  Martin Maechler  <maechler@stat.math.ethz.ch>
69    
70            * R/AllClass.R: add two virtual sparse classes ``on top''
71    
72    2005-03-24  Martin Maechler  <maechler@stat.math.ethz.ch>
73    
74            * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
75                    correspondingly fix examples and tests/ since new()
76                    doesn't work for virtual classes.
77    
78    2005-03-17  Martin Maechler  <maechler@stat.math.ethz.ch>
79    
80            * R/Matrix.R (as.matrix): method and one for unname()
81            * tests/dpoMatrix.R: tests should now be less platform dependent;
82              also run for R 2.1.0; using as.matrix()
83    
84    2005-03-15  Douglas Bates  <bates@bates1-home>
85    
86            * R/pMatrix.R: "pMatrix" class added
87            * ....
88    
89    2005-03-14  Douglas Bates  <bates@bates1-home>
90    
91            * R/dtpMatrix.R: Add unpack method and an example.
92    
93            * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
94            of general symmetric matrices and associated S4 methods.
95    
96    2005-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
97            +
98    2005-03-05  Martin Maechler  <maechler@stat.math.ethz.ch>
99    
100            * R/dgeMatrix.R (setAs): and many other files: more coercion,
101              crossprod() and "%*%" methods added; tests, too.
102            * tests/matprod.R: new, for testing these
103    
104    2005-03-03  Douglas Bates  <bates@bates1-home>
105    
106            * src/lmer.c (lmer_fitted): Added.
107    
108    2005-03-02  Douglas Bates  <bates@bates1-home>
109    
110            * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
111    
112    2005-02-28  Douglas Bates  <bates@bates1-home>
113    
114            * src/*.c,po/,inst/po: Internationalization and localization of
115            the package.
116    
117            * src/ldl.[ch]: Removed these as their contents are referenced in the
118            R_ldl.c file.
119    
120            * src/flame.[ch]: Removed these source files.
121    
122            * src/dtrMatrix.c (make_array_triangular): Move to Mutils
123    
124            * src/LU.[ch],src/init.c: absorb in factorizations
125    
126            * src/Mutils.h: prepare for internationalization
127    
128            * src/cblas.h: move the enum definitions to Mutils.h and remove
129            this file
130    
131    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
132    
133            * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
134    
135            * R/dtrMatrix.R: fix t() method
136    
137            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
138            * NAMESPACE: export them (and import generics from "methods")
139            * tests/group-methods.R : and test them.
140    
141            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
142            border case
143    
144    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
145    
146            * DESCRIPTION (Version): 0.95-2  released to CRAN
147    
148            * src/dgBCMatrix.c:
149            * src/lmer.c: many changes
150            * ...
151    
152    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
153    
154            * R/Matrix.R: add more sophisticated show() method.
155    
156    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
157    
158            * */* : almost complete reorganization of classes.
159    
160    2005-01-26  Douglas Bates  <bates@bates7>
161    
162            * R/AllGeneric.R: Added matrix exponential generic expm and a method
163            for the geMatrix class.
164    
165    2005-01-24  Douglas Bates  <bates@bates7>
166    
167            * src/Makefile (clean): Remove *.a and *.so
168    
169            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
170    
171    2005-01-23  Douglas Bates  <bates@bates7>
172    
173            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
174            had an effect in cases with more than 2 grouping factors.
175    
176    2005-01-03  Douglas Bates  <bates@bates1-home>
177    
178            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
179    
180    2004-12-23  Douglas Bates  <bates@bates1-home>
181    
182            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
183            and R_useDynamicSymbols (suggested by B.D.Ripley).
184    
185    2004-12-14  Douglas Bates  <bates@bates1-home>
186    
187            * R/sscMatrix.R: Add determinant methods
188    
189            * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
190            for tripletMatrix to matrix.
191    
192  2004-12-13  Douglas Bates  <bates@bates1-home>  2004-12-13  Douglas Bates  <bates@bates1-home>
193    
194            * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
195            no longer used.
196    
197          * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files          * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
198          with dynamic allocation of scratch arrays.          with dynamic allocation of scratch arrays.
199    

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