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revision 388, Mon Dec 13 16:00:22 2004 UTC revision 1245, Wed Apr 12 20:31:18 2006 UTC
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1  2004-12-13  Douglas Bates  <bates@bates1-home>  2006-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/dgCMatrix.R: add  storage.mode(.) <- "double" for "matrix"
4            arguments, such that M %*% 1:6 now works
5            * Tests/matprod.R: test the above
6    
7    2006-04-03  Douglas Bates  <bates@stat.wisc.edu>
8    
9            * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
10            the ranef.lmer class.
11    
12            * R/AllClass.R, NAMESPACE, R/lmer.R: Added a postVar generic and
13            methods to extract the posterior variances from the bVar slot.
14    
15    2006-03-30  Martin Maechler  <maechler@stat.math.ethz.ch>
16    
17            * R/dtCMatrix.R: allow coercion from  dgC* to triangular (dtC*)
18            * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
19    
20            * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
21            * tests/simple: (extended)
22    
23            * R/sparseMatrix.R (isTriangular): now using much improved
24            * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
25    
26    2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
27    
28            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
29            (problem report from Franklin Parlamis).  This should be done
30            generally.
31    
32    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
33    
34            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
35            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
36            update the plot methods.
37    
38    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
39    
40            * R/lmer.R (resid and ranef methods):  Added methods for the
41            "residuals" and "resid" generic but only for linear mixed model
42            fits.  Changed the ranef method to return a list of data frames so
43            that the plot methods now work.
44    
45    2006-03-16  Douglas Bates  <bates@bates2>
46    
47            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
48            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
49    
50            * DESCRIPTION (Date): New release
51    
52    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
53    
54            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
55    
56            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
57            * man/KNex.Rd: and other help files
58            * tests/*.R: several ones needed adaption
59            * inst/doc/Comparisons.Rnw: dito
60    
61    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
62    
63            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
64    
65            * tests/indexing.R: tests for new [<- methods for sparse matrices.
66    
67    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
68    
69            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
70    
71            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
72    
73    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
74    
75            * R/dMatrix.R: enable things like  M [ M < 10 ]
76            * R/dgeMatrix.R: implement it
77    
78    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
79    
80            * R/AllClass.R: define "summary.mer" and "*.lmer"
81            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
82            * R/lmer.R (show): now works with summary()
83    
84    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
85    
86            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
87            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
88                    support the above
89    
90    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
91    
92            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
93            Use glmFit$prior.weights for weights in a glmm.
94            Allow an option usePQL = FALSE to skip the PQL steps for the
95            Laplace method (and, in time, the AGQ method).
96    
97            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
98            into a separate function internal_mer_Xfactor to be able to call
99            it from internal_bhat.
100    
101    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
102    
103            * tests/Class+Meth.R (tstMatrixClass): function for much better
104            testing; now again of all actual classes.
105    
106            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
107                    use macros and define make_d_matrix_* and make_i_matrix_*
108                    where _i_ is for the ldense routines:
109    
110            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
111            * src/ldense.c (lsyMatrix_as_lgeMatrix):
112    
113            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
114    
115    
116    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
117    
118            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
119                    many different kinds of matrices.
120            * R/*.R: quite a few new methods were needed for R CMD check with
121                    new Matrix().  Very good for users playing around.
122    
123    
124    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
125    
126            * src/dgeMatrix.c (dMatrix_validate): new
127            * src/Mutils.c (dense_nonpacked_validate): new
128    
129            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
130    
131    
132    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
133    
134            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
135    
136    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
137    
138            * DESCRIPTION (Version): 0.99-6 released to CRAN
139    
140            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
141            segfault in cases with multiple non-nested grouping factors.
142    
143    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
144    
145            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
146                    (Depends): also on 'utils'
147    
148            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
149            * R/diagMatrix.R (Diagonal): constructor and methods for
150            diagonal matrices
151    
152            * R/ltTMatrix.R: new "minimal methods"
153    
154    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
155    
156            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
157            all methods (and help files).
158    
159    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
160    
161            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
162                    for case (dimn.  op  no_dimn.)
163    
164    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
165    
166            * DESCRIPTION (Version): 0.99-2  released to CRAN
167    
168    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
169    
170            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
171            by Julian Faraway.
172    
173    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
174    
175            * R/Auxiliaries.R (try_as): new utility
176            * R/sparseMatrix.R: use try_as() in coercion to original class
177    
178    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
179    
180            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
181    
182    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
183    
184            * R/Auxiliaries.R (dimNamesCheck): added
185    
186            * R/Matrix.R (as.array), (as.vector): new
187    
188    2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
189    
190            * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
191                    default.
192            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
193                    "pMatrix" now contains "sparseMatrix"
194    
195    2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
196    
197            * tests/Class+Meth.R: new tests; t(t(m)) == m
198    
199            * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
200    
201            * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
202            * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
203    
204            * R/dspMatrix.R: typo in "t" method
205    
206    2005-09-18  Douglas Bates  <bates@wisc.edu>
207    
208            * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
209            * R/Tsparse.R: instead of R/gTMatrix.R
210            * R/Csparse.R: new
211            * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
212            * src/Tsparse.c: new; many trivial methods calling cholmod_()
213            * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
214                            via cholmod
215    
216    2005-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
217    
218            * R/Auxiliaries.R (non0ind): new function using new C code
219            * src/dgCMatrix.c (compressed_non_0_ij): new utility
220    
221    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
222    
223            * src/chm_common.h: header file required by all C sources that
224            call CHOLMOD functions.  It defines a cholmod_common structure
225            called 'c' whose address is passed as the last argument to
226            (virtually) every CHOLMOD function.
227    
228            * src/Pattern.c: Simple example of the use of CHOLMOD.
229    
230            * src/init.c: initialize and finalize the cholmod_common structure.
231    
232            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
233            LDL and CCOLAMD from the U. of Florida sparse matrix library.
234    
235    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
236    
237            * inst/test-tools.R: new file collecting the utility functions used
238                    in ./tests/*.R
239    
240            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
241            * R/Matrix.R (cbind2): methods for NULL and missing
242    
243    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
244    
245            * R/AllClass.R: new "index" class for "[" and "[<-":
246                    First cut at "symmetricMatrix" and "triangularMatrix"
247            * R/gTMatrix.R (.ind.prep): new function;
248                    Logical and character indexing now work too.
249            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
250            * tests/indexing.R: new, including *.Rout.save
251            * tests/dgTMatrix.R: new
252    
253    2005-08-29  Douglas Bates  <bates@wisc.edu>
254    
255            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
256            indicator pos not being updated.  Also enforced upper triangular
257            for symmetric case.  Need to coerce edges component of elements of
258            edge list - grr! (Why don't they define their classes cleanly?)
259    
260    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
261    
262            * R/Matrix.R:  added first "[<-" methods; not yet functional
263            * R/denseMatrix.R: dito
264            * man/Subassign-methods.Rd: new help file for these
265    
266    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
267    
268            * DESCRIPTION (Version): 0.98-6
269    
270            * R/denseMatrix.R: new file for "[" fallback methods for all dense
271            matrices.
272    
273    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
274    
275            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
276                    as( <logical>, "matrix")
277    
278            * R/pMatrix.R: coercion to "lgTMatrix"
279    
280            * R/gTMatrix.R: new virtual class to define "[" methods for.
281            * man/gTMatrix-class.Rd:
282            * General slight re-organization of where "[" methods are defined.
283              more to come.
284    
285    2005-08-18  Douglas Bates  <bates@wisc.edu>
286    
287            * DESCRIPTION (Version): 0.98-5  released to CRAN
288    
289            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
290            * .....
291    
292    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
293    
294            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
295            or glmer objects.
296    
297    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
298    
299            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
300    
301    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
302    
303            * R/HBMM.R: finish re-writing R-only code.
304    
305    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
306    
307            * man/externalFormats.Rd: move documentation for writeHB and
308            writeMM here.
309    
310            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
311            (suggested by Paul Roecker).
312    
313            * tests/validObj.R (assertError): Comment out test that is failing
314            after recent changes in r-devel.
315    
316    
317    2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
318    
319            * R/AllClass.R: intermediate virtual class "denseMatrix"
320            * man/denseMatrix-class.Rd
321            * NAMESPACE: export it, and also export
322            * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
323    
324    2005-08-10  Douglas Bates  <bates@wisc.edu>
325    
326            * DESCRIPTION (Version): 0.98-3 to CRAN
327    
328            * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
329            matrix_solve code (which was really, really wrong).
330    
331    2005-08-07  Douglas Bates  <bates@wisc.edu>
332    
333            * DESCRIPTION (Version): 0.98-2
334    
335            * R/HBMM.R (readHB), (readMM): read Matrix Market formats
336    
337            * R/lmer.R (abbrvNms): new
338            * R/lmer.R (mcmcsamp): allow transformed parameters
339            * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
340            for the Harwell-Boeing and the MatrixMarket formats.
341    
342    2005-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
343    
344            * man/dtrMatrix-class.Rd: add examples
345            * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
346    
347            * TODO: note the dtpMatrix (docu) bug
348    
349            * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
350            in order to ensure that new as.matrix() is used by old functions,
351            e.g., svd(), qr(), eigen(), dist(),..;
352                  apply(), also matplot() or pairs().
353    
354    
355    2005-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
356    
357            * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
358              add comments about 'control' / lmerControl() arguments
359    
360    2005-07-27  Douglas Bates  <bates@wisc.edu>
361    
362            * man/sleepstudy.Rd: Added the sleep data set.
363            * DESCRIPTION (Version): 0.98-1  released to CRAN
364    
365    2005-07-12  Douglas Bates  <bates@wisc.edu>
366            * man/sleepstudy.Rd: Added the sleep data set.
367    
368            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
369            .Call calls that were producing spurious output.
370    
371    2005-07-05  Douglas Bates  <bates@wisc.edu>
372    
373            * R/lmer.R (lmer): stored updated variance component estimates in
374            mer object for the generalized model.  (Bug reported by Renaud
375            Lancelot).
376    
377    2005-07-03  Douglas Bates  <bates@wisc.edu>
378    
379            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
380            unidimensional case.
381    
382    2005-06-08  Douglas Bates  <bates@wisc.edu>
383    
384            * DESCRIPTION (Version): 0.96-1
385    
386            * moved  lmer-class' R and C code moved from lme4 to here
387    
388    2005-06-04  Douglas Bates  <bates@wisc.edu>
389    
390            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
391            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
392    
393    2005-06-02  Douglas Bates  <bates@wisc.edu>
394    
395            * src/Makefile.win: Forgot to update this when Makefile changed.
396    
397    2005-05-11  Douglas Bates  <bates@wisc.edu>
398    
399            * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
400            bug reported by Kurt Hornik and Michael Hahsler.
401    
402    2005-05-10  Douglas Bates  <bates@wisc.edu>
403    
404            * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
405            logical sparse matrices.  These will also be used in the symbolic
406            analysis for lmer objects.
407    
408            * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
409            of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
410    
411    2005-05-06  Douglas Bates  <bates@wisc.edu>
412    
413            * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
414            colMeans, colSums, rowMeans and rowSums.
415    
416    2005-04-18  Douglas Bates  <bates@wisc.edu>
417    
418            * src/lgCMatrix.[ch]: code for _validate method and stub for
419            multiplication operation.
420    
421            * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
422            to dgetrs.
423    
424            * src/init.c: Fix cut-and-paste error in definition of
425            dgeMatrix_matrix_solve
426    
427            * src/{many files}: Tighten code by using ALLOC_SLOT.
428    
429    2005-04-15  Douglas Bates  <bates@wisc.edu>
430    
431            * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
432    
433            * DESCRIPTION: Eliminate import of stats.
434    
435    
436    2005-04-06  Douglas Bates  <bates@wisc.edu>
437    
438            * R/AllClass.R : add logical sparse matrix classes
439    
440    2005-04-01  Martin Maechler  <maechler@stat.math.ethz.ch>
441    
442            * R/dgTMatrix.R: add "[" method for triplet matrices
443            * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
444    
445    2005-03-31  Douglas Bates  <bates@wisc.edu>
446    
447            * DESCRIPTION (Version): release 0.95-5 to CRAN
448    
449            * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
450            * R/sparseMatrix.R: %*%, crossprod()
451            * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
452            * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
453            * src/lmer.c (lmer_fitted): fix thinko
454    
455    2005-03-26  Martin Maechler  <maechler@stat.math.ethz.ch>
456    
457            * R/AllClass.R: add two virtual sparse classes ``on top''
458    
459    2005-03-24  Martin Maechler  <maechler@stat.math.ethz.ch>
460    
461            * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
462                    correspondingly fix examples and tests/ since new()
463                    doesn't work for virtual classes.
464    
465    2005-03-17  Martin Maechler  <maechler@stat.math.ethz.ch>
466    
467            * R/Matrix.R (as.matrix): method and one for unname()
468            * tests/dpoMatrix.R: tests should now be less platform dependent;
469              also run for R 2.1.0; using as.matrix()
470    
471    2005-03-15  Douglas Bates  <bates@wisc.edu>
472    
473            * R/pMatrix.R: "pMatrix" class added
474            * ....
475    
476    2005-03-14  Douglas Bates  <bates@wisc.edu>
477    
478            * R/dtpMatrix.R: Add unpack method and an example.
479    
480            * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
481            of general symmetric matrices and associated S4 methods.
482    
483    2005-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
484            +
485    2005-03-05  Martin Maechler  <maechler@stat.math.ethz.ch>
486    
487            * R/dgeMatrix.R (setAs): and many other files: more coercion,
488              crossprod() and "%*%" methods added; tests, too.
489            * tests/matprod.R: new, for testing these
490    
491    2005-03-03  Douglas Bates  <bates@wisc.edu>
492    
493            * src/lmer.c (lmer_fitted): Added.
494    
495    2005-03-02  Douglas Bates  <bates@wisc.edu>
496    
497            * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
498    
499    2005-02-28  Douglas Bates  <bates@wisc.edu>
500    
501            * src/*.c,po/,inst/po: Internationalization and localization of
502            the package.
503    
504            * src/ldl.[ch]: Removed these as their contents are referenced in the
505            R_ldl.c file.
506    
507            * src/flame.[ch]: Removed these source files.
508    
509            * src/dtrMatrix.c (make_array_triangular): Move to Mutils
510    
511            * src/LU.[ch],src/init.c: absorb in factorizations
512    
513            * src/Mutils.h: prepare for internationalization
514    
515            * src/cblas.h: move the enum definitions to Mutils.h and remove
516            this file
517    
518    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
519    
520            * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
521    
522            * R/dtrMatrix.R: fix t() method
523    
524            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
525            * NAMESPACE: export them (and import generics from "methods")
526            * tests/group-methods.R : and test them.
527    
528            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
529            border case
530    
531    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
532    
533            * DESCRIPTION (Version): 0.95-2  released to CRAN
534    
535            * src/dgBCMatrix.c:
536            * src/lmer.c: many changes
537            * ...
538    
539    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
540    
541            * R/Matrix.R: add more sophisticated show() method.
542    
543    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
544    
545            * */* : almost complete reorganization of classes.
546    
547    2005-01-26  Douglas Bates  <bates@wisc.edu>
548    
549            * R/AllGeneric.R: Added matrix exponential generic expm and a method
550            for the geMatrix class.
551    
552    2005-01-24  Douglas Bates  <bates@wisc.edu>
553    
554            * src/Makefile (clean): Remove *.a and *.so
555    
556            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
557    
558    2005-01-23  Douglas Bates  <bates@wisc.edu>
559    
560            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
561            had an effect in cases with more than 2 grouping factors.
562    
563    2005-01-03  Douglas Bates  <bates@wisc.edu>
564    
565            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
566    
567    2004-12-23  Douglas Bates  <bates@wisc.edu>
568    
569            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
570            and R_useDynamicSymbols (suggested by B.D.Ripley).
571    
572    2004-12-14  Douglas Bates  <bates@wisc.edu>
573    
574            * R/sscMatrix.R: Add determinant methods
575    
576            * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
577            for tripletMatrix to matrix.
578    
579    2004-12-13  Douglas Bates  <bates@wisc.edu>
580    
581            * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
582            no longer used.
583    
584          * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files          * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
585          with dynamic allocation of scratch arrays.          with dynamic allocation of scratch arrays.
# Line 7  Line 588 
588          for multivariate random effects with multiple grouping factors.          for multivariate random effects with multiple grouping factors.
589          Fixes part but not all of #15.          Fixes part but not all of #15.
590    
591  2004-12-03  Douglas Bates  <bates@bates1-home>  2004-12-03  Douglas Bates  <bates@wisc.edu>
592    
593          * src/lmeRep.c (lmeRep_factor): order of operations for multiple          * src/lmeRep.c (lmeRep_factor): order of operations for multiple
594          scalar grouping factors corrected.          scalar grouping factors corrected.
595    
596  2004-11-29  Douglas Bates  <bates@bates1-home>  2004-11-29  Douglas Bates  <bates@wisc.edu>
597    
598          * src/bCrosstab.c: remove diag_update which is no longer used          * src/bCrosstab.c: remove diag_update which is no longer used
599    
600  2004-11-16  Douglas Bates  <bates@bates1-home>  2004-11-16  Douglas Bates  <bates@wisc.edu>
601    
602          * src/Metis_utils.c: Move metis.h include to C sources so that the          * src/Metis_utils.c: Move metis.h include to C sources so that the
603          .h file can be included.          .h file can be included.
604    
605  2004-11-12  Douglas Bates  <bates@bates1-home>  2004-11-12  Douglas Bates  <bates@wisc.edu>
606    
607          * src/LU.c,geMatrix.c,trMatrix.c, etc.:          * src/LU.c,geMatrix.c,trMatrix.c, etc.:
608          Complete allocation of slots in NEW_OBJECT.          Complete allocation of slots in NEW_OBJECT.
609    
610          * src/Mutils.h: Moved list of symbols to an include file          * src/Mutils.h: Moved list of symbols to an include file
611    
612  2004-11-11  Douglas Bates  <bates@bates1-home>  2004-11-11  Douglas Bates  <bates@wisc.edu>
613    
614          * src/geMutils.c (Matrix_init): remove unused function          * src/geMutils.c (Matrix_init): remove unused function
615    
616  2004-11-10  Douglas Bates  <bates@bates1-home>  2004-11-10  Douglas Bates  <bates@wisc.edu>
617    
618          * src/cscMatrix.c (csc_to_imagemat): removed unused function          * src/cscMatrix.c (csc_to_imagemat): removed unused function
619    
620  2004-11-05  Douglas Bates  <bates@bates1-home>  2004-11-05  Douglas Bates  <bates@wisc.edu>
621    
622          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
623    
624  2004-10-27  Douglas Bates  <bates@bates1-home>  2004-10-27  Douglas Bates  <bates@wisc.edu>
625    
626          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
627    
628  2004-10-04  Douglas Bates  <bates@bates1-home>  2004-10-04  Douglas Bates  <bates@wisc.edu>
629    
630          * src/init.c: Created R_init_Matrix and added registration of C          * src/init.c: Created R_init_Matrix and added registration of C
631          routines.          routines.
632    
633  2004-10-02  Douglas Bates  <bates@bates1-home>  2004-10-02  Douglas Bates  <bates@wisc.edu>
634    
635          * R/tripletMatrix.R: Force a require(lattice) for the image methods.          * R/tripletMatrix.R: Force a require(lattice) for the image methods.
636    
637  2004-06-15  Douglas Bates  <bates@bates7>  2004-06-15  Douglas Bates  <bates@wisc.edu>
638    
639          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
640    

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