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revision 350, Tue Nov 23 15:39:45 2004 UTC revision 1236, Thu Mar 23 15:16:17 2006 UTC
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1  2004-11-16  Douglas Bates  <bates@bates1-home>  2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
2    
3            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
4            (problem report from Franklin Parlamis).  This should be done
5            generally.
6    
7    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
8    
9            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
10            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
11            update the plot methods.
12    
13    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
14    
15            * R/lmer.R (resid and ranef methods):  Added methods for the
16            "residuals" and "resid" generic but only for linear mixed model
17            fits.  Changed the ranef method to return a list of data frames so
18            that the plot methods now work.
19    
20    2006-03-16  Douglas Bates  <bates@bates2>
21    
22            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
23            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
24    
25            * DESCRIPTION (Date): New release
26    
27    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
28    
29            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
30    
31            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
32            * man/KNex.Rd: and other help files
33            * tests/*.R: several ones needed adaption
34            * inst/doc/Comparisons.Rnw: dito
35    
36    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
37    
38            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
39    
40            * tests/indexing.R: tests for new [<- methods for sparse matrices.
41    
42    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
43    
44            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
45    
46            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
47    
48    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
49    
50            * R/dMatrix.R: enable things like  M [ M < 10 ]
51            * R/dgeMatrix.R: implement it
52    
53    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
54    
55            * R/AllClass.R: define "summary.mer" and "*.lmer"
56            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
57            * R/lmer.R (show): now works with summary()
58    
59    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
60    
61            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
62            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
63                    support the above
64    
65    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
66    
67            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
68            Use glmFit$prior.weights for weights in a glmm.
69            Allow an option usePQL = FALSE to skip the PQL steps for the
70            Laplace method (and, in time, the AGQ method).
71    
72            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
73            into a separate function internal_mer_Xfactor to be able to call
74            it from internal_bhat.
75    
76    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
77    
78            * tests/Class+Meth.R (tstMatrixClass): function for much better
79            testing; now again of all actual classes.
80    
81            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
82                    use macros and define make_d_matrix_* and make_i_matrix_*
83                    where _i_ is for the ldense routines:
84    
85            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
86            * src/ldense.c (lsyMatrix_as_lgeMatrix):
87    
88            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
89    
90    
91    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
92    
93            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
94                    many different kinds of matrices.
95            * R/*.R: quite a few new methods were needed for R CMD check with
96                    new Matrix().  Very good for users playing around.
97    
98    
99    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
100    
101            * src/dgeMatrix.c (dMatrix_validate): new
102            * src/Mutils.c (dense_nonpacked_validate): new
103    
104            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
105    
106    
107    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
108    
109            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
110    
111    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
112    
113            * DESCRIPTION (Version): 0.99-6 released to CRAN
114    
115            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
116            segfault in cases with multiple non-nested grouping factors.
117    
118    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
119    
120            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
121                    (Depends): also on 'utils'
122    
123            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
124            * R/diagMatrix.R (Diagonal): constructor and methods for
125            diagonal matrices
126    
127            * R/ltTMatrix.R: new "minimal methods"
128    
129    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
130    
131            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
132            all methods (and help files).
133    
134    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
135    
136            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
137                    for case (dimn.  op  no_dimn.)
138    
139    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
140    
141            * DESCRIPTION (Version): 0.99-2  released to CRAN
142    
143    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
144    
145            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
146            by Julian Faraway.
147    
148    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
149    
150            * R/Auxiliaries.R (try_as): new utility
151            * R/sparseMatrix.R: use try_as() in coercion to original class
152    
153    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
154    
155            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
156    
157    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
158    
159            * R/Auxiliaries.R (dimNamesCheck): added
160    
161            * R/Matrix.R (as.array), (as.vector): new
162    
163    2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
164    
165            * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
166                    default.
167            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
168                    "pMatrix" now contains "sparseMatrix"
169    
170    2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
171    
172            * tests/Class+Meth.R: new tests; t(t(m)) == m
173    
174            * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
175    
176            * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
177            * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
178    
179            * R/dspMatrix.R: typo in "t" method
180    
181    2005-09-18  Douglas Bates  <bates@wisc.edu>
182    
183            * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
184            * R/Tsparse.R: instead of R/gTMatrix.R
185            * R/Csparse.R: new
186            * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
187            * src/Tsparse.c: new; many trivial methods calling cholmod_()
188            * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
189                            via cholmod
190    
191    2005-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
192    
193            * R/Auxiliaries.R (non0ind): new function using new C code
194            * src/dgCMatrix.c (compressed_non_0_ij): new utility
195    
196    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
197    
198            * src/chm_common.h: header file required by all C sources that
199            call CHOLMOD functions.  It defines a cholmod_common structure
200            called 'c' whose address is passed as the last argument to
201            (virtually) every CHOLMOD function.
202    
203            * src/Pattern.c: Simple example of the use of CHOLMOD.
204    
205            * src/init.c: initialize and finalize the cholmod_common structure.
206    
207            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
208            LDL and CCOLAMD from the U. of Florida sparse matrix library.
209    
210    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
211    
212            * inst/test-tools.R: new file collecting the utility functions used
213                    in ./tests/*.R
214    
215            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
216            * R/Matrix.R (cbind2): methods for NULL and missing
217    
218    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
219    
220            * R/AllClass.R: new "index" class for "[" and "[<-":
221                    First cut at "symmetricMatrix" and "triangularMatrix"
222            * R/gTMatrix.R (.ind.prep): new function;
223                    Logical and character indexing now work too.
224            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
225            * tests/indexing.R: new, including *.Rout.save
226            * tests/dgTMatrix.R: new
227    
228    2005-08-29  Douglas Bates  <bates@wisc.edu>
229    
230            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
231            indicator pos not being updated.  Also enforced upper triangular
232            for symmetric case.  Need to coerce edges component of elements of
233            edge list - grr! (Why don't they define their classes cleanly?)
234    
235    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
236    
237            * R/Matrix.R:  added first "[<-" methods; not yet functional
238            * R/denseMatrix.R: dito
239            * man/Subassign-methods.Rd: new help file for these
240    
241    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
242    
243            * DESCRIPTION (Version): 0.98-6
244    
245            * R/denseMatrix.R: new file for "[" fallback methods for all dense
246            matrices.
247    
248    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
249    
250            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
251                    as( <logical>, "matrix")
252    
253            * R/pMatrix.R: coercion to "lgTMatrix"
254    
255            * R/gTMatrix.R: new virtual class to define "[" methods for.
256            * man/gTMatrix-class.Rd:
257            * General slight re-organization of where "[" methods are defined.
258              more to come.
259    
260    2005-08-18  Douglas Bates  <bates@wisc.edu>
261    
262            * DESCRIPTION (Version): 0.98-5  released to CRAN
263    
264            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
265            * .....
266    
267    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
268    
269            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
270            or glmer objects.
271    
272    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
273    
274            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
275    
276    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
277    
278            * R/HBMM.R: finish re-writing R-only code.
279    
280    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
281    
282            * man/externalFormats.Rd: move documentation for writeHB and
283            writeMM here.
284    
285            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
286            (suggested by Paul Roecker).
287    
288            * tests/validObj.R (assertError): Comment out test that is failing
289            after recent changes in r-devel.
290    
291    
292    2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
293    
294            * R/AllClass.R: intermediate virtual class "denseMatrix"
295            * man/denseMatrix-class.Rd
296            * NAMESPACE: export it, and also export
297            * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
298    
299    2005-08-10  Douglas Bates  <bates@wisc.edu>
300    
301            * DESCRIPTION (Version): 0.98-3 to CRAN
302    
303            * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
304            matrix_solve code (which was really, really wrong).
305    
306    2005-08-07  Douglas Bates  <bates@wisc.edu>
307    
308            * DESCRIPTION (Version): 0.98-2
309    
310            * R/HBMM.R (readHB), (readMM): read Matrix Market formats
311    
312            * R/lmer.R (abbrvNms): new
313            * R/lmer.R (mcmcsamp): allow transformed parameters
314            * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
315            for the Harwell-Boeing and the MatrixMarket formats.
316    
317    2005-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
318    
319            * man/dtrMatrix-class.Rd: add examples
320            * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
321    
322            * TODO: note the dtpMatrix (docu) bug
323    
324            * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
325            in order to ensure that new as.matrix() is used by old functions,
326            e.g., svd(), qr(), eigen(), dist(),..;
327                  apply(), also matplot() or pairs().
328    
329    
330    2005-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
331    
332            * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
333              add comments about 'control' / lmerControl() arguments
334    
335    2005-07-27  Douglas Bates  <bates@wisc.edu>
336    
337            * man/sleepstudy.Rd: Added the sleep data set.
338            * DESCRIPTION (Version): 0.98-1  released to CRAN
339    
340    2005-07-12  Douglas Bates  <bates@wisc.edu>
341            * man/sleepstudy.Rd: Added the sleep data set.
342    
343            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
344            .Call calls that were producing spurious output.
345    
346    2005-07-05  Douglas Bates  <bates@wisc.edu>
347    
348            * R/lmer.R (lmer): stored updated variance component estimates in
349            mer object for the generalized model.  (Bug reported by Renaud
350            Lancelot).
351    
352    2005-07-03  Douglas Bates  <bates@wisc.edu>
353    
354            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
355            unidimensional case.
356    
357    2005-06-08  Douglas Bates  <bates@wisc.edu>
358    
359            * DESCRIPTION (Version): 0.96-1
360    
361            * moved  lmer-class' R and C code moved from lme4 to here
362    
363    2005-06-04  Douglas Bates  <bates@wisc.edu>
364    
365            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
366            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
367    
368    2005-06-02  Douglas Bates  <bates@wisc.edu>
369    
370            * src/Makefile.win: Forgot to update this when Makefile changed.
371    
372    2005-05-11  Douglas Bates  <bates@wisc.edu>
373    
374            * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
375            bug reported by Kurt Hornik and Michael Hahsler.
376    
377    2005-05-10  Douglas Bates  <bates@wisc.edu>
378    
379            * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
380            logical sparse matrices.  These will also be used in the symbolic
381            analysis for lmer objects.
382    
383            * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
384            of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
385    
386    2005-05-06  Douglas Bates  <bates@wisc.edu>
387    
388            * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
389            colMeans, colSums, rowMeans and rowSums.
390    
391    2005-04-18  Douglas Bates  <bates@wisc.edu>
392    
393            * src/lgCMatrix.[ch]: code for _validate method and stub for
394            multiplication operation.
395    
396            * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
397            to dgetrs.
398    
399            * src/init.c: Fix cut-and-paste error in definition of
400            dgeMatrix_matrix_solve
401    
402            * src/{many files}: Tighten code by using ALLOC_SLOT.
403    
404    2005-04-15  Douglas Bates  <bates@wisc.edu>
405    
406            * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
407    
408            * DESCRIPTION: Eliminate import of stats.
409    
410    
411    2005-04-06  Douglas Bates  <bates@wisc.edu>
412    
413            * R/AllClass.R : add logical sparse matrix classes
414    
415    2005-04-01  Martin Maechler  <maechler@stat.math.ethz.ch>
416    
417            * R/dgTMatrix.R: add "[" method for triplet matrices
418            * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
419    
420    2005-03-31  Douglas Bates  <bates@wisc.edu>
421    
422            * DESCRIPTION (Version): release 0.95-5 to CRAN
423    
424            * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
425            * R/sparseMatrix.R: %*%, crossprod()
426            * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
427            * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
428            * src/lmer.c (lmer_fitted): fix thinko
429    
430    2005-03-26  Martin Maechler  <maechler@stat.math.ethz.ch>
431    
432            * R/AllClass.R: add two virtual sparse classes ``on top''
433    
434    2005-03-24  Martin Maechler  <maechler@stat.math.ethz.ch>
435    
436            * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
437                    correspondingly fix examples and tests/ since new()
438                    doesn't work for virtual classes.
439    
440    2005-03-17  Martin Maechler  <maechler@stat.math.ethz.ch>
441    
442            * R/Matrix.R (as.matrix): method and one for unname()
443            * tests/dpoMatrix.R: tests should now be less platform dependent;
444              also run for R 2.1.0; using as.matrix()
445    
446    2005-03-15  Douglas Bates  <bates@wisc.edu>
447    
448            * R/pMatrix.R: "pMatrix" class added
449            * ....
450    
451    2005-03-14  Douglas Bates  <bates@wisc.edu>
452    
453            * R/dtpMatrix.R: Add unpack method and an example.
454    
455            * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
456            of general symmetric matrices and associated S4 methods.
457    
458    2005-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
459            +
460    2005-03-05  Martin Maechler  <maechler@stat.math.ethz.ch>
461    
462            * R/dgeMatrix.R (setAs): and many other files: more coercion,
463              crossprod() and "%*%" methods added; tests, too.
464            * tests/matprod.R: new, for testing these
465    
466    2005-03-03  Douglas Bates  <bates@wisc.edu>
467    
468            * src/lmer.c (lmer_fitted): Added.
469    
470    2005-03-02  Douglas Bates  <bates@wisc.edu>
471    
472            * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
473    
474    2005-02-28  Douglas Bates  <bates@wisc.edu>
475    
476            * src/*.c,po/,inst/po: Internationalization and localization of
477            the package.
478    
479            * src/ldl.[ch]: Removed these as their contents are referenced in the
480            R_ldl.c file.
481    
482            * src/flame.[ch]: Removed these source files.
483    
484            * src/dtrMatrix.c (make_array_triangular): Move to Mutils
485    
486            * src/LU.[ch],src/init.c: absorb in factorizations
487    
488            * src/Mutils.h: prepare for internationalization
489    
490            * src/cblas.h: move the enum definitions to Mutils.h and remove
491            this file
492    
493    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
494    
495            * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
496    
497            * R/dtrMatrix.R: fix t() method
498    
499            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
500            * NAMESPACE: export them (and import generics from "methods")
501            * tests/group-methods.R : and test them.
502    
503            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
504            border case
505    
506    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
507    
508            * DESCRIPTION (Version): 0.95-2  released to CRAN
509    
510            * src/dgBCMatrix.c:
511            * src/lmer.c: many changes
512            * ...
513    
514    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
515    
516            * R/Matrix.R: add more sophisticated show() method.
517    
518    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
519    
520            * */* : almost complete reorganization of classes.
521    
522    2005-01-26  Douglas Bates  <bates@wisc.edu>
523    
524            * R/AllGeneric.R: Added matrix exponential generic expm and a method
525            for the geMatrix class.
526    
527    2005-01-24  Douglas Bates  <bates@wisc.edu>
528    
529            * src/Makefile (clean): Remove *.a and *.so
530    
531            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
532    
533    2005-01-23  Douglas Bates  <bates@wisc.edu>
534    
535            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
536            had an effect in cases with more than 2 grouping factors.
537    
538    2005-01-03  Douglas Bates  <bates@wisc.edu>
539    
540            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
541    
542    2004-12-23  Douglas Bates  <bates@wisc.edu>
543    
544            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
545            and R_useDynamicSymbols (suggested by B.D.Ripley).
546    
547    2004-12-14  Douglas Bates  <bates@wisc.edu>
548    
549            * R/sscMatrix.R: Add determinant methods
550    
551            * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
552            for tripletMatrix to matrix.
553    
554    2004-12-13  Douglas Bates  <bates@wisc.edu>
555    
556            * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
557            no longer used.
558    
559            * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
560            with dynamic allocation of scratch arrays.
561    
562            * src/ssclme.c (ssclme_copy_ctab): Fixed bug in creation of ZtZ
563            for multivariate random effects with multiple grouping factors.
564            Fixes part but not all of #15.
565    
566    2004-12-03  Douglas Bates  <bates@wisc.edu>
567    
568            * src/lmeRep.c (lmeRep_factor): order of operations for multiple
569            scalar grouping factors corrected.
570    
571    2004-11-29  Douglas Bates  <bates@wisc.edu>
572    
573            * src/bCrosstab.c: remove diag_update which is no longer used
574    
575    2004-11-16  Douglas Bates  <bates@wisc.edu>
576    
577          * src/Metis_utils.c: Move metis.h include to C sources so that the          * src/Metis_utils.c: Move metis.h include to C sources so that the
578          .h file can be included.          .h file can be included.
579    
580  2004-11-12  Douglas Bates  <bates@bates1-home>  2004-11-12  Douglas Bates  <bates@wisc.edu>
581    
582          * src/LU.c,geMatrix.c,trMatrix.c, etc.:          * src/LU.c,geMatrix.c,trMatrix.c, etc.:
583          Complete allocation of slots in NEW_OBJECT.          Complete allocation of slots in NEW_OBJECT.
584    
585          * src/Mutils.h: Moved list of symbols to an include file          * src/Mutils.h: Moved list of symbols to an include file
586    
587  2004-11-11  Douglas Bates  <bates@bates1-home>  2004-11-11  Douglas Bates  <bates@wisc.edu>
588    
589          * src/geMutils.c (Matrix_init): remove unused function          * src/geMutils.c (Matrix_init): remove unused function
590    
591  2004-11-10  Douglas Bates  <bates@bates1-home>  2004-11-10  Douglas Bates  <bates@wisc.edu>
592    
593          * src/cscMatrix.c (csc_to_imagemat): removed unused function          * src/cscMatrix.c (csc_to_imagemat): removed unused function
594    
595  2004-11-05  Douglas Bates  <bates@bates1-home>  2004-11-05  Douglas Bates  <bates@wisc.edu>
596    
597          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
598    
599  2004-10-27  Douglas Bates  <bates@bates1-home>  2004-10-27  Douglas Bates  <bates@wisc.edu>
600    
601          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
602    
603  2004-10-04  Douglas Bates  <bates@bates1-home>  2004-10-04  Douglas Bates  <bates@wisc.edu>
604    
605          * src/init.c: Created R_init_Matrix and added registration of C          * src/init.c: Created R_init_Matrix and added registration of C
606          routines.          routines.
607    
608  2004-10-02  Douglas Bates  <bates@bates1-home>  2004-10-02  Douglas Bates  <bates@wisc.edu>
609    
610          * R/tripletMatrix.R: Force a require(lattice) for the image methods.          * R/tripletMatrix.R: Force a require(lattice) for the image methods.
611    
612  2004-06-15  Douglas Bates  <bates@bates7>  2004-06-15  Douglas Bates  <bates@wisc.edu>
613    
614          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
615    

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