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revision 350, Tue Nov 23 15:39:45 2004 UTC revision 1232, Tue Mar 21 11:07:55 2006 UTC
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1  2004-11-16  Douglas Bates  <bates@bates1-home>  2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
2    
3            * R/lmer.R (resid and ranef methods):  Added methods for the
4            "residuals" and "resid" generic but only for linear mixed model
5            fits.  Changed the ranef method to return a list of data frames so
6            that the plot methods now work.
7    
8    2006-03-16  Douglas Bates  <bates@bates2>
9    
10            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
11            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
12    
13            * DESCRIPTION (Date): New release
14    
15    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
16    
17            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
18    
19            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
20            * man/KNex.Rd: and other help files
21            * tests/*.R: several ones needed adaption
22            * inst/doc/Comparisons.Rnw: dito
23    
24    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
25    
26            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
27    
28            * tests/indexing.R: tests for new [<- methods for sparse matrices.
29    
30    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
31    
32            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
33    
34            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
35    
36    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
37    
38            * R/dMatrix.R: enable things like  M [ M < 10 ]
39            * R/dgeMatrix.R: implement it
40    
41    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
42    
43            * R/AllClass.R: define "summary.mer" and "*.lmer"
44            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
45            * R/lmer.R (show): now works with summary()
46    
47    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
48    
49            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
50            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
51                    support the above
52    
53    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
54    
55            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
56            Use glmFit$prior.weights for weights in a glmm.
57            Allow an option usePQL = FALSE to skip the PQL steps for the
58            Laplace method (and, in time, the AGQ method).
59    
60            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
61            into a separate function internal_mer_Xfactor to be able to call
62            it from internal_bhat.
63    
64    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
65    
66            * tests/Class+Meth.R (tstMatrixClass): function for much better
67            testing; now again of all actual classes.
68    
69            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
70                    use macros and define make_d_matrix_* and make_i_matrix_*
71                    where _i_ is for the ldense routines:
72    
73            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
74            * src/ldense.c (lsyMatrix_as_lgeMatrix):
75    
76            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
77    
78    
79    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
80    
81            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
82                    many different kinds of matrices.
83            * R/*.R: quite a few new methods were needed for R CMD check with
84                    new Matrix().  Very good for users playing around.
85    
86    
87    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
88    
89            * src/dgeMatrix.c (dMatrix_validate): new
90            * src/Mutils.c (dense_nonpacked_validate): new
91    
92            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
93    
94    
95    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
96    
97            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
98    
99    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
100    
101            * DESCRIPTION (Version): 0.99-6 released to CRAN
102    
103            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
104            segfault in cases with multiple non-nested grouping factors.
105    
106    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
107    
108            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
109                    (Depends): also on 'utils'
110    
111            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
112            * R/diagMatrix.R (Diagonal): constructor and methods for
113            diagonal matrices
114    
115            * R/ltTMatrix.R: new "minimal methods"
116    
117    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
118    
119            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
120            all methods (and help files).
121    
122    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
123    
124            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
125                    for case (dimn.  op  no_dimn.)
126    
127    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
128    
129            * DESCRIPTION (Version): 0.99-2  released to CRAN
130    
131    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
132    
133            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
134            by Julian Faraway.
135    
136    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
137    
138            * R/Auxiliaries.R (try_as): new utility
139            * R/sparseMatrix.R: use try_as() in coercion to original class
140    
141    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
142    
143            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
144    
145    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
146    
147            * R/Auxiliaries.R (dimNamesCheck): added
148    
149            * R/Matrix.R (as.array), (as.vector): new
150    
151    2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
152    
153            * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
154                    default.
155            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
156                    "pMatrix" now contains "sparseMatrix"
157    
158    2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
159    
160            * tests/Class+Meth.R: new tests; t(t(m)) == m
161    
162            * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
163    
164            * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
165            * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
166    
167            * R/dspMatrix.R: typo in "t" method
168    
169    2005-09-18  Douglas Bates  <bates@wisc.edu>
170    
171            * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
172            * R/Tsparse.R: instead of R/gTMatrix.R
173            * R/Csparse.R: new
174            * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
175            * src/Tsparse.c: new; many trivial methods calling cholmod_()
176            * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
177                            via cholmod
178    
179    2005-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
180    
181            * R/Auxiliaries.R (non0ind): new function using new C code
182            * src/dgCMatrix.c (compressed_non_0_ij): new utility
183    
184    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
185    
186            * src/chm_common.h: header file required by all C sources that
187            call CHOLMOD functions.  It defines a cholmod_common structure
188            called 'c' whose address is passed as the last argument to
189            (virtually) every CHOLMOD function.
190    
191            * src/Pattern.c: Simple example of the use of CHOLMOD.
192    
193            * src/init.c: initialize and finalize the cholmod_common structure.
194    
195            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
196            LDL and CCOLAMD from the U. of Florida sparse matrix library.
197    
198    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
199    
200            * inst/test-tools.R: new file collecting the utility functions used
201                    in ./tests/*.R
202    
203            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
204            * R/Matrix.R (cbind2): methods for NULL and missing
205    
206    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
207    
208            * R/AllClass.R: new "index" class for "[" and "[<-":
209                    First cut at "symmetricMatrix" and "triangularMatrix"
210            * R/gTMatrix.R (.ind.prep): new function;
211                    Logical and character indexing now work too.
212            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
213            * tests/indexing.R: new, including *.Rout.save
214            * tests/dgTMatrix.R: new
215    
216    2005-08-29  Douglas Bates  <bates@wisc.edu>
217    
218            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
219            indicator pos not being updated.  Also enforced upper triangular
220            for symmetric case.  Need to coerce edges component of elements of
221            edge list - grr! (Why don't they define their classes cleanly?)
222    
223    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
224    
225            * R/Matrix.R:  added first "[<-" methods; not yet functional
226            * R/denseMatrix.R: dito
227            * man/Subassign-methods.Rd: new help file for these
228    
229    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
230    
231            * DESCRIPTION (Version): 0.98-6
232    
233            * R/denseMatrix.R: new file for "[" fallback methods for all dense
234            matrices.
235    
236    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
237    
238            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
239                    as( <logical>, "matrix")
240    
241            * R/pMatrix.R: coercion to "lgTMatrix"
242    
243            * R/gTMatrix.R: new virtual class to define "[" methods for.
244            * man/gTMatrix-class.Rd:
245            * General slight re-organization of where "[" methods are defined.
246              more to come.
247    
248    2005-08-18  Douglas Bates  <bates@wisc.edu>
249    
250            * DESCRIPTION (Version): 0.98-5  released to CRAN
251    
252            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
253            * .....
254    
255    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
256    
257            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
258            or glmer objects.
259    
260    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
261    
262            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
263    
264    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
265    
266            * R/HBMM.R: finish re-writing R-only code.
267    
268    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
269    
270            * man/externalFormats.Rd: move documentation for writeHB and
271            writeMM here.
272    
273            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
274            (suggested by Paul Roecker).
275    
276            * tests/validObj.R (assertError): Comment out test that is failing
277            after recent changes in r-devel.
278    
279    
280    2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
281    
282            * R/AllClass.R: intermediate virtual class "denseMatrix"
283            * man/denseMatrix-class.Rd
284            * NAMESPACE: export it, and also export
285            * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
286    
287    2005-08-10  Douglas Bates  <bates@wisc.edu>
288    
289            * DESCRIPTION (Version): 0.98-3 to CRAN
290    
291            * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
292            matrix_solve code (which was really, really wrong).
293    
294    2005-08-07  Douglas Bates  <bates@wisc.edu>
295    
296            * DESCRIPTION (Version): 0.98-2
297    
298            * R/HBMM.R (readHB), (readMM): read Matrix Market formats
299    
300            * R/lmer.R (abbrvNms): new
301            * R/lmer.R (mcmcsamp): allow transformed parameters
302            * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
303            for the Harwell-Boeing and the MatrixMarket formats.
304    
305    2005-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
306    
307            * man/dtrMatrix-class.Rd: add examples
308            * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
309    
310            * TODO: note the dtpMatrix (docu) bug
311    
312            * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
313            in order to ensure that new as.matrix() is used by old functions,
314            e.g., svd(), qr(), eigen(), dist(),..;
315                  apply(), also matplot() or pairs().
316    
317    
318    2005-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
319    
320            * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
321              add comments about 'control' / lmerControl() arguments
322    
323    2005-07-27  Douglas Bates  <bates@wisc.edu>
324    
325            * man/sleepstudy.Rd: Added the sleep data set.
326            * DESCRIPTION (Version): 0.98-1  released to CRAN
327    
328    2005-07-12  Douglas Bates  <bates@wisc.edu>
329            * man/sleepstudy.Rd: Added the sleep data set.
330    
331            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
332            .Call calls that were producing spurious output.
333    
334    2005-07-05  Douglas Bates  <bates@wisc.edu>
335    
336            * R/lmer.R (lmer): stored updated variance component estimates in
337            mer object for the generalized model.  (Bug reported by Renaud
338            Lancelot).
339    
340    2005-07-03  Douglas Bates  <bates@wisc.edu>
341    
342            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
343            unidimensional case.
344    
345    2005-06-08  Douglas Bates  <bates@wisc.edu>
346    
347            * DESCRIPTION (Version): 0.96-1
348    
349            * moved  lmer-class' R and C code moved from lme4 to here
350    
351    2005-06-04  Douglas Bates  <bates@wisc.edu>
352    
353            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
354            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
355    
356    2005-06-02  Douglas Bates  <bates@wisc.edu>
357    
358            * src/Makefile.win: Forgot to update this when Makefile changed.
359    
360    2005-05-11  Douglas Bates  <bates@wisc.edu>
361    
362            * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
363            bug reported by Kurt Hornik and Michael Hahsler.
364    
365    2005-05-10  Douglas Bates  <bates@wisc.edu>
366    
367            * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
368            logical sparse matrices.  These will also be used in the symbolic
369            analysis for lmer objects.
370    
371            * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
372            of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
373    
374    2005-05-06  Douglas Bates  <bates@wisc.edu>
375    
376            * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
377            colMeans, colSums, rowMeans and rowSums.
378    
379    2005-04-18  Douglas Bates  <bates@wisc.edu>
380    
381            * src/lgCMatrix.[ch]: code for _validate method and stub for
382            multiplication operation.
383    
384            * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
385            to dgetrs.
386    
387            * src/init.c: Fix cut-and-paste error in definition of
388            dgeMatrix_matrix_solve
389    
390            * src/{many files}: Tighten code by using ALLOC_SLOT.
391    
392    2005-04-15  Douglas Bates  <bates@wisc.edu>
393    
394            * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
395    
396            * DESCRIPTION: Eliminate import of stats.
397    
398    
399    2005-04-06  Douglas Bates  <bates@wisc.edu>
400    
401            * R/AllClass.R : add logical sparse matrix classes
402    
403    2005-04-01  Martin Maechler  <maechler@stat.math.ethz.ch>
404    
405            * R/dgTMatrix.R: add "[" method for triplet matrices
406            * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
407    
408    2005-03-31  Douglas Bates  <bates@wisc.edu>
409    
410            * DESCRIPTION (Version): release 0.95-5 to CRAN
411    
412            * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
413            * R/sparseMatrix.R: %*%, crossprod()
414            * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
415            * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
416            * src/lmer.c (lmer_fitted): fix thinko
417    
418    2005-03-26  Martin Maechler  <maechler@stat.math.ethz.ch>
419    
420            * R/AllClass.R: add two virtual sparse classes ``on top''
421    
422    2005-03-24  Martin Maechler  <maechler@stat.math.ethz.ch>
423    
424            * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
425                    correspondingly fix examples and tests/ since new()
426                    doesn't work for virtual classes.
427    
428    2005-03-17  Martin Maechler  <maechler@stat.math.ethz.ch>
429    
430            * R/Matrix.R (as.matrix): method and one for unname()
431            * tests/dpoMatrix.R: tests should now be less platform dependent;
432              also run for R 2.1.0; using as.matrix()
433    
434    2005-03-15  Douglas Bates  <bates@wisc.edu>
435    
436            * R/pMatrix.R: "pMatrix" class added
437            * ....
438    
439    2005-03-14  Douglas Bates  <bates@wisc.edu>
440    
441            * R/dtpMatrix.R: Add unpack method and an example.
442    
443            * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
444            of general symmetric matrices and associated S4 methods.
445    
446    2005-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
447            +
448    2005-03-05  Martin Maechler  <maechler@stat.math.ethz.ch>
449    
450            * R/dgeMatrix.R (setAs): and many other files: more coercion,
451              crossprod() and "%*%" methods added; tests, too.
452            * tests/matprod.R: new, for testing these
453    
454    2005-03-03  Douglas Bates  <bates@wisc.edu>
455    
456            * src/lmer.c (lmer_fitted): Added.
457    
458    2005-03-02  Douglas Bates  <bates@wisc.edu>
459    
460            * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
461    
462    2005-02-28  Douglas Bates  <bates@wisc.edu>
463    
464            * src/*.c,po/,inst/po: Internationalization and localization of
465            the package.
466    
467            * src/ldl.[ch]: Removed these as their contents are referenced in the
468            R_ldl.c file.
469    
470            * src/flame.[ch]: Removed these source files.
471    
472            * src/dtrMatrix.c (make_array_triangular): Move to Mutils
473    
474            * src/LU.[ch],src/init.c: absorb in factorizations
475    
476            * src/Mutils.h: prepare for internationalization
477    
478            * src/cblas.h: move the enum definitions to Mutils.h and remove
479            this file
480    
481    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
482    
483            * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
484    
485            * R/dtrMatrix.R: fix t() method
486    
487            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
488            * NAMESPACE: export them (and import generics from "methods")
489            * tests/group-methods.R : and test them.
490    
491            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
492            border case
493    
494    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
495    
496            * DESCRIPTION (Version): 0.95-2  released to CRAN
497    
498            * src/dgBCMatrix.c:
499            * src/lmer.c: many changes
500            * ...
501    
502    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
503    
504            * R/Matrix.R: add more sophisticated show() method.
505    
506    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
507    
508            * */* : almost complete reorganization of classes.
509    
510    2005-01-26  Douglas Bates  <bates@wisc.edu>
511    
512            * R/AllGeneric.R: Added matrix exponential generic expm and a method
513            for the geMatrix class.
514    
515    2005-01-24  Douglas Bates  <bates@wisc.edu>
516    
517            * src/Makefile (clean): Remove *.a and *.so
518    
519            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
520    
521    2005-01-23  Douglas Bates  <bates@wisc.edu>
522    
523            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
524            had an effect in cases with more than 2 grouping factors.
525    
526    2005-01-03  Douglas Bates  <bates@wisc.edu>
527    
528            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
529    
530    2004-12-23  Douglas Bates  <bates@wisc.edu>
531    
532            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
533            and R_useDynamicSymbols (suggested by B.D.Ripley).
534    
535    2004-12-14  Douglas Bates  <bates@wisc.edu>
536    
537            * R/sscMatrix.R: Add determinant methods
538    
539            * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
540            for tripletMatrix to matrix.
541    
542    2004-12-13  Douglas Bates  <bates@wisc.edu>
543    
544            * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
545            no longer used.
546    
547            * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
548            with dynamic allocation of scratch arrays.
549    
550            * src/ssclme.c (ssclme_copy_ctab): Fixed bug in creation of ZtZ
551            for multivariate random effects with multiple grouping factors.
552            Fixes part but not all of #15.
553    
554    2004-12-03  Douglas Bates  <bates@wisc.edu>
555    
556            * src/lmeRep.c (lmeRep_factor): order of operations for multiple
557            scalar grouping factors corrected.
558    
559    2004-11-29  Douglas Bates  <bates@wisc.edu>
560    
561            * src/bCrosstab.c: remove diag_update which is no longer used
562    
563    2004-11-16  Douglas Bates  <bates@wisc.edu>
564    
565          * src/Metis_utils.c: Move metis.h include to C sources so that the          * src/Metis_utils.c: Move metis.h include to C sources so that the
566          .h file can be included.          .h file can be included.
567    
568  2004-11-12  Douglas Bates  <bates@bates1-home>  2004-11-12  Douglas Bates  <bates@wisc.edu>
569    
570          * src/LU.c,geMatrix.c,trMatrix.c, etc.:          * src/LU.c,geMatrix.c,trMatrix.c, etc.:
571          Complete allocation of slots in NEW_OBJECT.          Complete allocation of slots in NEW_OBJECT.
572    
573          * src/Mutils.h: Moved list of symbols to an include file          * src/Mutils.h: Moved list of symbols to an include file
574    
575  2004-11-11  Douglas Bates  <bates@bates1-home>  2004-11-11  Douglas Bates  <bates@wisc.edu>
576    
577          * src/geMutils.c (Matrix_init): remove unused function          * src/geMutils.c (Matrix_init): remove unused function
578    
579  2004-11-10  Douglas Bates  <bates@bates1-home>  2004-11-10  Douglas Bates  <bates@wisc.edu>
580    
581          * src/cscMatrix.c (csc_to_imagemat): removed unused function          * src/cscMatrix.c (csc_to_imagemat): removed unused function
582    
583  2004-11-05  Douglas Bates  <bates@bates1-home>  2004-11-05  Douglas Bates  <bates@wisc.edu>
584    
585          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile          * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
586    
587  2004-10-27  Douglas Bates  <bates@bates1-home>  2004-10-27  Douglas Bates  <bates@wisc.edu>
588    
589          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls          * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
590    
591  2004-10-04  Douglas Bates  <bates@bates1-home>  2004-10-04  Douglas Bates  <bates@wisc.edu>
592    
593          * src/init.c: Created R_init_Matrix and added registration of C          * src/init.c: Created R_init_Matrix and added registration of C
594          routines.          routines.
595    
596  2004-10-02  Douglas Bates  <bates@bates1-home>  2004-10-02  Douglas Bates  <bates@wisc.edu>
597    
598          * R/tripletMatrix.R: Force a require(lattice) for the image methods.          * R/tripletMatrix.R: Force a require(lattice) for the image methods.
599    
600  2004-06-15  Douglas Bates  <bates@bates7>  2004-06-15  Douglas Bates  <bates@wisc.edu>
601    
602          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.          * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
603    

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