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revision 1945, Wed Jul 4 18:07:07 2007 UTC revision 2062, Sat Sep 1 21:06:52 2007 UTC
# Line 1  Line 1 
1    2007-09-01  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/Matrix.R ([<-): add (Matrix,missing,ANY,Matrix) etc
4            * tests/indexing.R: add new regression for the above cases.
5    
6    2007-08-30  Martin Maechler  <maechler@stat.math.ethz.ch>
7    
8            * src/Mutils.h (__sun): clause for alloca.h on Solaris
9    
10    2007-08-16  Martin Maechler  <maechler@stat.math.ethz.ch>
11    
12            * DESCRIPTION (Date, Version): 0.999375-2
13    
14    2007-08-15  Martin Maechler  <maechler@stat.math.ethz.ch>
15    
16            * R/HBMM.R (readMM): make work for pattern matrices as well
17    
18    2007-08-14 13:07  Douglas Bates <bates@stat.wisc.edu>
19    
20            * [r4730] src/Mutils.h: declare alloca
21            * [r4734] NAMESPACE, R/AllGeneric.R, R/Csparse.R, R/HBMM.R, R/Tsparse.R,
22              R/dgCMatrix.R, R/dgTMatrix.R, R/dsCMatrix.R, R/dsTMatrix.R,
23              man/externalFormats.Rd, src/Csparse.c, src/Csparse.h, src/DEPS.mkf,
24              src/HBMM.c, src/HBMM.h, src/Mutils.h, src/SOURCES_C.mkf, src/init.c,
25              src/mmio.c, src/mmio.h: Remove deprecated function writeHB and its
26              methods; switch writeMM to use CHOLMOD code; repair readMM
27    
28    2007-08-14  Martin Maechler  <maechler@stat.math.ethz.ch>
29    
30            * R/nearPD.R, man/nearPD.Rd (nearPD): new function built on Jens
31            Oehlschlaegel's ... result type still to be discussed!
32    
33    2007-08-10  Martin Maechler  <maechler@stat.math.ethz.ch>
34    
35            * man/image-methods.Rd: new, combining all image() methods
36    
37    2007-08-09  Martin Maechler  <maechler@stat.math.ethz.ch>
38    
39            * R/dgCMatrix.R: define qr() and lu() methods for "sparseMatrix"
40            to work via dgC...
41    
42            * R/Matrix.R (Matrix): special treatment for "table" (S3)
43    
44    2007-08-07  Martin Maechler  <maechler@stat.math.ethz.ch>
45    
46            * R/dgTMatrix.R (image): change defaults to
47                    aspect = "iso", colorkey = FALSE
48    
49    2007-08-06  Martin Maechler  <maechler@stat.math.ethz.ch>
50    
51            * src/dsyMatrix.c (dsyMatrix_matrix_mm): 'b' might be matrix;
52            must copy its *expanded* x slot before LAPACK call.
53    
54            * tests/matprod.R: test the last days' changes.
55    
56    2007-08-06 16:43  Douglas Bates <bates@stat.wisc.edu>
57    
58            * [r4712] inst/include/Matrix_stubs.c: Change R_cholmod_printf in stubs
59              as well as in sources
60            * [r4713] src/dsyMatrix.c: Duplicate the contents of the RHS before
61              Lapack call
62    
63    2007-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
64    
65            * R/Matrix.R (%*%, crossprod, tcrossprod): add method for
66                    ("Matrix", "matrix") which is needed in some cases.
67            Ditto for solve().
68    
69            * R/colSums.R (.as.dge.Fun): need ddenseMatrix methods to avoid
70            infinite recursion in dispatch for some cases.
71    
72    2007-08-02 08:48  Martin Maechler <maechler@stat.math.ethz.ch>
73    
74            * [r4693] src/chm_common.c: R_cholmod_printf() instead of Rprintf() just
75              so pointers match
76    
77    2007-08-02  Martin Maechler  <maechler@stat.math.ethz.ch>
78    
79            * DESCRIPTION (Date): set ready for release -- 0.999375-1
80    
81    2007-08-01 15:44  Douglas Bates <bates@stat.wisc.edu>
82    
83            * [r4686] inst/include/Matrix.h, inst/include/Matrix_stubs.c,
84              src/chm_common.c, src/chm_common.h: Change API for
85              numeric_as_chm_dense and N_AS_CHM_DN
86    
87    2007-08-01  Martin Maechler  <maechler@stat.math.ethz.ch>
88    
89            * src/dtrMatrix.c (dtrMatrix_matrix_mm): fix dimensionality check (!)
90            * tests/matprod.R: regr.test for it
91    
92    2007-07-20  Martin Maechler  <maechler@stat.math.ethz.ch>
93    
94            * R/dMatrix.R: fix from Brian for   Math2(., digits = "missing")
95            * tests/group-methods.R: and regression-test it
96    
97    2007-07-19 19:45  Douglas Bates <bates@stat.wisc.edu>
98    
99            * [r4642] inst/include/Matrix.h, inst/include/Matrix_stubs.c,
100              inst/include/cholmod.h, src/chm_common.c, src/init.c: Export
101              triplet_to_sparse, documentation, use typedefs
102    
103    2007-07-18  Martin Maechler  <maechler@stat.math.ethz.ch>
104    
105            * man/dpoMatrix-class.Rd: added 'corMatrix' example
106    
107            * src/dsyMatrix.[ch] (dsyMatrix_as_matrix): new 'keep_dimnames' arg
108            * src/dtrMatrix.[ch] (dtrMatrix_as_matrix): ditto
109            * src/init.c, R/dsyMatrix.R, R/dtrMatrix.R, R/lgTMatrix.R: ditto
110    
111            * R/lsparseMatrix.R: bug fix in "all" method
112            * R/Ops.R (.do.Logic.lsparse): "|" bug in borderline case
113    
114            * R/dsyMatrix.R (coerce->dsTMatrix): (i,j) slots should *not* have names
115            * R/ngTMatrix.R (coerce->ngTMatrix): ditto;
116                    + matrix |-> nMatrix coercion
117            * R/pMatrix.R: + setAs()  to dMatrix and from nMatrix
118            * man/pMatrix-class.Rd: ditto
119    
120            * R/Matrix.R (Summary): method for non-dMatrix
121    
122            * tests/Class+Meth.R (extraValid): new check about "dirty" slots
123            * tests/Class+Meth.R (tstMatrixClass): test norm(.);
124                    test all Summary methods.
125    
126    2007-07-16  Martin Maechler  <maechler@stat.math.ethz.ch>
127    
128            * R/dgeMatrix.R (norm, rcond): methods for 'matrix'
129    
130    2007-07-14  Martin Maechler  <maechler@stat.math.ethz.ch>
131    
132            * R/sparseMatrix.R (norm): simple methods for sparseMatrix
133    
134            * R/pMatrix.R (t?crossprod): methods for pMatrix
135    
136    2007-07-10  Douglas Bates  <bates@stat.wisc.edu>
137    
138            * src/dgeMatrix.c (dgeMatrix_colsums): Get the logic straight.
139    
140    2007-07-09 20:45  Douglas Bates <bates@stat.wisc.edu>
141    
142            * [r4579] src/dgeMatrix.c: Untangle horrible code in dgeMatrix_colsums
143              trying to fix a subtle bug - which has been somewhere else.
144    
145    2007-07-09 19:43  Martin Maechler <maechler@stat.math.ethz.ch>
146    
147            * [r4578] src/dgeMatrix.c: "cleaned" dgeMatrix_colsums() - but did not
148              solve the bug
149    
150    2007-07-08  Martin Maechler  <maechler@stat.math.ethz.ch>
151    
152            * src/dgCMatrix.c (compressed_to_TMatrix):
153    
154    2007-07-07  Martin Maechler  <maechler@stat.math.ethz.ch>
155    
156            * src/Csparse.c (Rsparse_validate): new, to have some validity
157            checking for RsparseMatrix
158            * src/dgCMatrix.c (xRMatrix_validate): ditto
159            * src/dtCMatrix.c (tRMatrix_validate): ditto
160    
161    2007-07-07  Douglas Bates <bates@stat.wisc.edu>
162    
163            * [r4567] R/AllClass.R: Slots already in RsparseMatrix were redefined in
164              lgRMatrix
165            * [r4568] DESCRIPTION: Prepare for bug-fix release
166            * [r4570] src/CHOLMOD/Check/cholmod_write.c: Include cholmod_matrixops.h
167              for declaration of cholmod_symmetry
168    
169    2007-07-06  Martin Maechler  <maechler@stat.math.ethz.ch>
170    
171            * DESCRIPTION (Version): 0.999375 merged into the trunk; ready for
172            release.
173    
174    2007-07-06 14:11  Douglas Bates <bates@stat.wisc.edu>
175    
176            * [r4559] src/iohb.c, src/iohb.h: Remove Harwell-Boeing input/output
177              functions - no longer used
178            * [r4560] src/HBMM.c, src/Mutils.c, src/dgTMatrix.c, src/dgeMatrix.c,
179              src/dspMatrix.c, src/dsyMatrix.c, src/dtCMatrix.c,
180              src/factorizations.c, src/sparseQR.c: Replace most calls to Calloc by
181              Alloca
182    
183    2007-07-06 13:14  Martin Maechler <maechler@stat.math.ethz.ch>
184    
185            * [r4558] inst/doc/Comparisons.Rnw, src/CHMfactor.c, src/Csparse.c,
186              src/Tsparse.c, src/chm_common.c, src/chm_common.h, src/dense.c,
187              src/dgCMatrix.c, src/dsCMatrix.c, src/dtTMatrix.c, src/sparseQR.c,
188              src/t_gCMatrix_colSums.c: more R_CheckStack()s
189    
190    2007-07-05 18:12  Douglas Bates <bates@stat.wisc.edu>
191    
192            * [r4550] inst/include/Matrix.h: Add the macro N_AS_CHM_DN to "alloca"
193              the required amount of memory then call M_numeric_as_chm_dense.
194            * [r4556] src/Mutils.h, src/dgCMatrix.c: Define and use the Alloca macro
195              (like Calloc but calling alloca)
196    
197    2007-07-05  Martin Maechler  <maechler@stat.math.ethz.ch>
198    
199            * R/sparseMatrix.R (printSpMatrix): renamed from prSpMatrix()
200            and extended with more sophisticated 'col.names' option.
201            * NAMESPACE: export  printSparseMatrix()
202            * man/printSpMatrix.Rd: document, incl. examples
203    
204    2007-07-04 16:21  Douglas Bates <bates@stat.wisc.edu>
205    
206            * [r4543] src/cs_utils.c, src/cs_utils.h, src/dgCMatrix.c,
207              src/dtCMatrix.c, src/sparseQR.c: CSP typedef for *cs and macro
208              AS_CSP. API change - pass the empty structure to Matrix_as_cs.
209    
210  2007-07-04  Martin Maechler  <maechler@stat.math.ethz.ch>  2007-07-04  Martin Maechler  <maechler@stat.math.ethz.ch>
211    
212          * DESCRIPTION (Version): 0.99875-4          * DESCRIPTION (Version): 0.99875-4
# Line 17  Line 226 
226          * src/lgCMatrix.c ([ln]csc_to_matrix): no longer lose dimnames,          * src/lgCMatrix.c ([ln]csc_to_matrix): no longer lose dimnames,
227          e.g. in as(<ngCMatrix>, "matrix")          e.g. in as(<ngCMatrix>, "matrix")
228    
229    2007-07-01 13:27  Douglas Bates <bates@stat.wisc.edu>
230    
231            * [r4529] .: Create a branch for the API changes from the 0.99875
232              series to the 0.999375 series
233            * [r4530] DESCRIPTION, inst/include/Matrix.h,
234              inst/include/Matrix_stubs.c, src/CHMfactor.c, src/Csparse.c,
235              src/Mutils.h, src/Tsparse.c, src/chm_common.c, src/chm_common.h,
236              src/dense.c, src/dgCMatrix.c, src/dsCMatrix.c, src/dtTMatrix.c,
237              src/t_gCMatrix_colSums.c: API change - pass the empty structure to the
238              as_cholmod_x functions
239    
240    2007-06-30 09:05  Martin Maechler <maechler@stat.math.ethz.ch>
241    
242            * [r4527] trunk/Matrix/DESCRIPTION, trunk/Matrix/NAMESPACE,
243              trunk/Matrix/inst/doc/Comparisons.Rnw: add session- and hardware-info
244              to Comparisons
245    
246    >>>>>>> .merge-right.r4561
247  2007-06-29  Martin Maechler  <maechler@stat.math.ethz.ch>  2007-06-29  Martin Maechler  <maechler@stat.math.ethz.ch>
248    
249          * DESCRIPTION (Version): 0.99875-3 ready to be released.          * DESCRIPTION (Version): 0.99875-3 ready to be released.

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