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revision 1877, Tue Jun 5 17:06:34 2007 UTC revision 1964, Sat Jul 7 18:26:22 2007 UTC
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1    2007-07-07 18:23  Douglas Bates <bates@stat.wisc.edu>
2    
3            * [r4567] R/AllClass.R: Slots already in RsparseMatrix were redefined in
4              lgRMatrix
5            * [r4568] DESCRIPTION: Prepare for bug-fix release
6    
7    2007-07-06  Martin Maechler  <maechler@stat.math.ethz.ch>
8    
9            * DESCRIPTION (Version): 0.999375 merged into the trunk; ready for
10            release.
11    
12    2007-07-06 14:11  Douglas Bates <bates@stat.wisc.edu>
13    
14            * [r4559] src/iohb.c, src/iohb.h: Remove Harwell-Boeing input/output
15              functions - no longer used
16            * [r4560] src/HBMM.c, src/Mutils.c, src/dgTMatrix.c, src/dgeMatrix.c,
17              src/dspMatrix.c, src/dsyMatrix.c, src/dtCMatrix.c,
18              src/factorizations.c, src/sparseQR.c: Replace most calls to Calloc by
19              Alloca
20    
21    2007-07-06 13:14  Martin Maechler <maechler@stat.math.ethz.ch>
22    
23            * [r4558] inst/doc/Comparisons.Rnw, src/CHMfactor.c, src/Csparse.c,
24              src/Tsparse.c, src/chm_common.c, src/chm_common.h, src/dense.c,
25              src/dgCMatrix.c, src/dsCMatrix.c, src/dtTMatrix.c, src/sparseQR.c,
26              src/t_gCMatrix_colSums.c: more R_CheckStack()s
27    
28    2007-07-05 18:12  Douglas Bates <bates@stat.wisc.edu>
29    
30            * [r4550] inst/include/Matrix.h: Add the macro N_AS_CHM_DN to "alloca"
31              the required amount of memory then call M_numeric_as_chm_dense.
32            * [r4556] src/Mutils.h, src/dgCMatrix.c: Define and use the Alloca macro
33              (like Calloc but calling alloca)
34    
35    2007-07-05  Martin Maechler  <maechler@stat.math.ethz.ch>
36    
37            * R/sparseMatrix.R (printSpMatrix): renamed from prSpMatrix()
38            and extended with more sophisticated 'col.names' option.
39            * NAMESPACE: export  printSparseMatrix()
40            * man/printSpMatrix.Rd: document, incl. examples
41    
42    2007-07-04 16:21  Douglas Bates <bates@stat.wisc.edu>
43    
44            * [r4543] src/cs_utils.c, src/cs_utils.h, src/dgCMatrix.c,
45              src/dtCMatrix.c, src/sparseQR.c: CSP typedef for *cs and macro
46              AS_CSP. API change - pass the empty structure to Matrix_as_cs.
47    
48    2007-07-04  Martin Maechler  <maechler@stat.math.ethz.ch>
49    
50            * DESCRIPTION (Version): 0.99875-4
51    
52            * tests/Class+Meth.R (tstMatrixClass): add dimnames, and hence test
53            some dimnames perservation.
54    
55            * R/dsTMatrix.R (t-method): keep dimnames
56            * R/dtTMatrix.R:  ditto
57    
58            * R/sparseMatrix.R (prSpMatrix): print colnames when non-trivial
59            and ncol(.) < 10
60    
61            * src/cs_utils.c: drop check_class() and use Matrix_check_class()
62            from Mutils.h
63    
64            * src/lgCMatrix.c ([ln]csc_to_matrix): no longer lose dimnames,
65            e.g. in as(<ngCMatrix>, "matrix")
66    
67    2007-07-01 13:27  Douglas Bates <bates@stat.wisc.edu>
68    
69            * [r4529] .: Create a branch for the API changes from the 0.99875
70              series to the 0.999375 series
71            * [r4530] DESCRIPTION, inst/include/Matrix.h,
72              inst/include/Matrix_stubs.c, src/CHMfactor.c, src/Csparse.c,
73              src/Mutils.h, src/Tsparse.c, src/chm_common.c, src/chm_common.h,
74              src/dense.c, src/dgCMatrix.c, src/dsCMatrix.c, src/dtTMatrix.c,
75              src/t_gCMatrix_colSums.c: API change - pass the empty structure to the
76              as_cholmod_x functions
77    
78    2007-06-30 09:05  Martin Maechler <maechler@stat.math.ethz.ch>
79    
80            * [r4527] trunk/Matrix/DESCRIPTION, trunk/Matrix/NAMESPACE,
81              trunk/Matrix/inst/doc/Comparisons.Rnw: add session- and hardware-info
82              to Comparisons
83    
84    >>>>>>> .merge-right.r4561
85    2007-06-29  Martin Maechler  <maechler@stat.math.ethz.ch>
86    
87            * DESCRIPTION (Version): 0.99875-3 ready to be released.
88    
89            * R/sparseMatrix.R (spMatrix): make spMatrix(3,4) working
90    
91            * R/AllGeneric.R: set "Math" (and "Math2") group generics in a way
92            that should also work in a future version of R.
93    
94    2007-06-21  Martin Maechler  <maechler@stat.math.ethz.ch>
95    
96            * NAMESPACE, R/AllClass.R: "xsparseVector" class union.
97    
98            * R/sparseVector.R: more *sparseVector coercions, notably for
99            non - double ones.
100    
101    2007-06-19  Martin Maechler  <maechler@stat.math.ethz.ch>
102    
103            * R/colSums.R: new file for all (col|row)(Sums|Means) methods,
104              notably the new ones building on the new .Call(.)s:
105    
106            * src/dgCMatrix.c (DEF_gCMatrix_COLSUMS): use to define
107            all 4 of [dlin]gCMatrix_colSums().
108    
109    2007-06-18 16:12  Douglas Bates <bates@stat.wisc.edu>
110    
111            * [r4472] src/Syms.h, src/init.c: Added Matrix_lengthSym
112            * [r4473] src/dgCMatrix.c: Modified dgCMatrix_colSums for sparseVector
113              result
114    
115    2007-06-16  Martin Maechler  <maechler@stat.math.ethz.ch>
116    
117            * R/kronecker.R: fix typo (could lead to inf.recursion)
118            * test/simple.R: testing that
119    
120            * R/sparseMatrix.R (prSpMatrix): change to be used as print()
121            method as well (which can have arguments, show() can't).
122    
123    2007-06-16 15:52  Douglas Bates <bates@stat.wisc.edu>
124    
125            * [r4466] R/dgCMatrix.R, src/dgCMatrix.c, src/dgCMatrix.h, src/init.c:
126              added dgCMatrix_colSums for [col,row][Sums,Means]
127    
128    2007-06-15 23:15  Douglas Bates <bates@stat.wisc.edu>
129    
130            * [r4460] R/sparseMatrix.R, man/dgCMatrix-class.Rd, src/dgCMatrix.c,
131              src/dgCMatrix.h, src/init.c: added lm.fit.sparse (unexported),
132              coercion of "factor" to "dgCMatrix" and dgCMatrix_cholsol
133            * [r4461] R/AllClass.R, man/sparseMatrix-class.Rd: draft "indicators"
134              class
135            * [r4463] R/sparseMatrix.R, man/dgCMatrix-class.Rd,
136              man/sparseMatrix-class.Rd: Don't need an "indicators" class - use the
137              row names to store the levels - duh!  Added an example.
138    
139    2007-06-14  Martin Maechler  <maechler@stat.math.ethz.ch>
140    
141            * src/Csparse.c (Csparse_validate): check for *repeated* entries
142            thanks to example from Christian Buchta; with a test here:
143            * tests/simple.R:
144    
145    2007-06-07  Martin Maechler  <maechler@stat.math.ethz.ch>
146    
147            * R/Auxiliaries.R (callGeneric): another fix, needed for some cases
148            of colSums(*, sparseResult = TRUE)
149    
150    2007-06-06  Martin Maechler  <maechler@stat.math.ethz.ch>
151    
152            * R/lsparseMatrix.R, R/ldenseMatrix.R (all, any): change default to
153            'na.rm = FALSE' as "everywhere" else in R.
154    
155  2007-06-05 Douglas Bates <bates@stat.wisc.edu>  2007-06-05 Douglas Bates <bates@stat.wisc.edu>
156    
157            * [r4421] src/CSparse_install.sh: Modify for new organization of
158              CSparse package
159          * [r4425] src/UFsparse_download.sh: Update to version 3.0.0 of          * [r4425] src/UFsparse_download.sh: Update to version 3.0.0 of
160            SuiteSparse            SuiteSparse
161          * [r4426] src/Makefile: add ./UFconfig to the include path for          * [r4426] src/Makefile: add ./UFconfig to the include path for
162            compilation            compilation
163          * [r4427] src/cs.c, src/cs.h: update to CSparse version 2.2.0          * [r4427] src/cs.[ch]: update to CSparse version 2.2.0
164          * [r4428] inst/doc/UFsparse/* src/AMD/* src/CHOLMOD/*          * [r4428] inst/doc/UFsparse/* src/{AMD,CHOLMOD,COLAMD}/*
165            src/COLAMD/* src/UFconfig/UFconfig.h: Update to version 3.0.0 of            src/UFconfig/UFconfig.h: Update to version 3.0.0 of SuiteSparse
           SuiteSparse  
166    
167  2007-06-05  Martin Maechler  <maechler@stat.math.ethz.ch>  2007-06-05  Martin Maechler  <maechler@stat.math.ethz.ch>
168    

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