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revision 1827, Wed Apr 25 22:22:41 2007 UTC revision 1909, Mon Jun 18 16:15:49 2007 UTC
# Line 1  Line 1 
1    2007-06-18 16:12  Douglas Bates <bates@stat.wisc.edu>
2    
3            * [r4472] src/Syms.h, src/init.c: Added Matrix_lengthSym
4            * [r4473] src/dgCMatrix.c: Modified dgCMatrix_colSums for sparseVector
5              result
6    
7    2007-06-16  Martin Maechler  <maechler@stat.math.ethz.ch>
8    
9            * R/kronecker.R: fix typo (could lead to inf.recursion)
10            * test/simple.R: testing that
11    
12            * R/sparseMatrix.R (prSpMatrix): change to be used as print()
13            method (which can have arguments, show() can't).
14    
15    2007-06-16 15:52  Douglas Bates <bates@stat.wisc.edu>
16    
17            * [r4466] R/dgCMatrix.R, src/dgCMatrix.c, src/dgCMatrix.h, src/init.c:
18              added dgCMatrix_colSums for [col,row][Sums,Means]
19    
20    2007-06-15 23:15  Douglas Bates <bates@stat.wisc.edu>
21    
22            * [r4460] R/sparseMatrix.R, man/dgCMatrix-class.Rd, src/dgCMatrix.c,
23              src/dgCMatrix.h, src/init.c: added lm.fit.sparse (unexported),
24              coercion of "factor" to "dgCMatrix" and dgCMatrix_cholsol
25            * [r4461] R/AllClass.R, man/sparseMatrix-class.Rd: draft "indicators"
26              class
27            * [r4463] R/sparseMatrix.R, man/dgCMatrix-class.Rd,
28              man/sparseMatrix-class.Rd: Don't need an "indicators" class - use the
29              row names to store the levels - duh!  Added an example.
30    
31    2007-06-14  Martin Maechler  <maechler@stat.math.ethz.ch>
32    
33            * src/Csparse.c (Csparse_validate): check for *repeated* entries
34            thanks to example from Christian Buchta; with a test here:
35            * tests/simple.R:
36    
37    2007-06-07  Martin Maechler  <maechler@stat.math.ethz.ch>
38    
39            * R/Auxiliaries.R (callGeneric): another fix, needed for some cases
40            of colSums(*, sparseResult = TRUE)
41    
42    2007-06-06  Martin Maechler  <maechler@stat.math.ethz.ch>
43    
44            * R/lsparseMatrix.R, R/ldenseMatrix.R (all, any): change default to
45            'na.rm = FALSE' as "everywhere" else in R.
46    
47    2007-06-05 Douglas Bates <bates@stat.wisc.edu>
48    
49            * [r4421] src/CSparse_install.sh: Modify for new organization of
50              CSparse package
51            * [r4425] src/UFsparse_download.sh: Update to version 3.0.0 of
52              SuiteSparse
53            * [r4426] src/Makefile: add ./UFconfig to the include path for
54              compilation
55            * [r4427] src/cs.[ch]: update to CSparse version 2.2.0
56            * [r4428] inst/doc/UFsparse/* src/{AMD,CHOLMOD,COLAMD}/*
57              src/UFconfig/UFconfig.h: Update to version 3.0.0 of SuiteSparse
58    
59    2007-06-05  Martin Maechler  <maechler@stat.math.ethz.ch>
60    
61            * R/Auxiliaries.R (emptyColnames): + argument msg.if.not.empty, used in
62            * R/sparseMatrix.R (prSpMatrix): now gives a message about
63            suppressed column names.
64    
65    2007-06-04 17:13  Douglas Bates <bates@stat.wisc.edu>
66    
67            * [r4418] src/Csparse.c, src/HBMM.c, src/Mutils.c, src/Mutils.h,
68              src/Tsparse.c, src/chm_common.c, src/chm_common.h, src/dgCMatrix.c,
69              src/dgeMatrix.c, src/dpoMatrix.c, src/dpoMatrix.h, src/dppMatrix.c,
70              src/dppMatrix.h, src/dsCMatrix.c, src/dspMatrix.c, src/dspMatrix.h,
71              src/dsyMatrix.c, src/dsyMatrix.h, src/dtpMatrix.c, src/dtrMatrix.c:
72              Remove warnings after change to const char* CHAR
73    
74    2007-06-04 17:11  Douglas Bates <bates@stat.wisc.edu>
75    
76            * [r4417] inst/include/Matrix_stubs.c, inst/include/cholmod.h: Corrected
77              type of M_cholmod_ssmult
78    
79    2007-06-03 14:42  Douglas Bates <bates@stat.wisc.edu>
80    
81            * [r4412] inst/include/Matrix_stubs.c, inst/include/cholmod.h,
82              src/init.c: Yet another cholmod export - cholmod_ssmult
83    
84    2007-05-23  Martin Maechler  <maechler@stat.math.ethz.ch>
85    
86            * NAMESPACE: exported drop0(), since
87            * man/drop0.Rd: I have seen several cases, I really wanted to use
88            it, so our users may want too.
89    
90    2007-05-22  Martin Maechler  <maechler@stat.math.ethz.ch>
91    
92            * man/colSums.Rd: separately document colSums() etc, since these
93            have the extra argument 'sparseResult'.
94    
95    2007-05-21  Martin Maechler  <maechler@stat.math.ethz.ch>
96    
97            * R/sparseMatrix.R (spMatrix): utility (T)sparse Matrix constructor;
98            * man/spMatrix.Rd: docu., including examples
99    
100            * R/Auxiliaries.R (sp.colMeans): etc, using a patched callGeneric(),
101            in order to make colMeans() etc fast *and* correct.
102            * R/sparseVector.R (replSPvec): "[<-" functionality for
103            sparseVectors; tested in
104            * tests/simple.R:
105    
106    2007-05-19  Martin Maechler  <maechler@stat.math.ethz.ch>
107    
108            * R/sparseMatrix.R (print.sparseSummary): and summary() method for
109            (very) sparse Matrices; output similar to Matlab's print().
110    
111    2007-05-17  Douglas Bates  <bates@stat.wisc.edu>
112    
113            * src/HBMM.c (Matrix_writeMatrixMarket): Write 1-based, not
114            0-based, indices (Jose Quesada <quesada@gmail.com>).
115    
116    2007-05-16  Douglas Bates  <bates@stat.wisc.edu>
117    
118            * R/CHMfactor.R: Added solve methods for a CHMfactor object.
119    
120    2007-05-16  Martin Maechler  <maechler@stat.math.ethz.ch>
121    
122            * R/Auxiliaries.R (sparsapply): new utility, much faster than
123            tapply1() for large sparse matrices.
124    
125    2007-05-15  Martin Maechler  <maechler@stat.math.ethz.ch>
126    
127            * R/Matrix.R (dim<-): reshape now via sparseVector.
128    
129            * R/sparseVector.R: methods and function for
130            * R/AllClass.R: new "sparseVector" class and daughters.
131            * NAMESPACE: export new classes
132    
133    2007-05-14  Martin Maechler  <maechler@stat.math.ethz.ch>
134    
135            * DESCRIPTION (Version): 0.99875-1
136            * src/Makefile.win: also remove Lapack code from here (cf. 04-25).
137    
138    2007-05-11  Martin Maechler  <maechler@stat.math.ethz.ch>
139    
140            * R/Tsparse.R ([, Tsparse): fix last case: *duplicated*, symmetric
141            indexing
142            * tests/indexing.R: test set for that.
143    
144    2007-05-08  Martin Maechler  <maechler@stat.math.ethz.ch>
145    
146            * R/Tsparse.R (replTmat): fix the case of *duplicated* index
147            entries.
148            * tests/indexing.R(out): add regression test for it
149    
150    2007-04-30  Martin Maechler  <maechler@stat.math.ethz.ch>
151    
152            * R/(l(dense|sparse))?Matrix.R (!): use 'x', not 'e1' as argument
153            name for "!" method definitions.
154    
155    2007-04-26  Martin Maechler  <maechler@stat.math.ethz.ch>
156    
157            * R/Tsparse.R (intI): new utility, used for "[" :
158                    Cleanup up there, and fixes for duplicated indices - more TODO!
159    
160            * tests/indexing.R(out): more tests
161    
162  2007-04-25  Douglas Bates  <bates@stat.wisc.edu>  2007-04-25  Douglas Bates  <bates@stat.wisc.edu>
163    
164          * DESCRIPTION,src/Makefile: require R>= 2.5.0 and remove Lapack          * DESCRIPTION,src/Makefile: require R>= 2.5.0 and remove Lapack
# Line 6  Line 167 
167          * src/init.c,inst/include/{Matrix_stubs.c,cholmod.h}:export          * src/init.c,inst/include/{Matrix_stubs.c,cholmod.h}:export
168          cholmod_factorize_p (used in lme4 for GLMMs and NLMMs).          cholmod_factorize_p (used in lme4 for GLMMs and NLMMs).
169    
170    2007-04-21  Martin Maechler  <maechler@stat.math.ethz.ch>
171    
172            * R/Matrix.R (image): method for all Matrices, not just sparse ones.
173    
174    2007-04-17  Martin Maechler  <maechler@stat.math.ethz.ch>
175    
176            * R/Auxiliaries.R (tapply1): unname(.) -> colSums() etc don't end
177            up with extraneous names '0'...'<n-1>'
178    
179  2007-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>  2007-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
180    
181          * R/dgTMatrix.R (mat2dgT): care about NAs          * R/dgTMatrix.R (mat2dgT): care about NAs

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