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revision 1827, Wed Apr 25 22:22:41 2007 UTC revision 1903, Sat Jun 16 18:31:51 2007 UTC
# Line 1  Line 1 
1    2007-06-16  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/sparseMatrix.R (prSpMatrix): change to be used as print()
4            method (which can have arguments, show() can't).
5    
6    2007-06-16 15:52  Douglas Bates <bates@stat.wisc.edu>
7    
8            * [r4466] R/dgCMatrix.R, src/dgCMatrix.c, src/dgCMatrix.h, src/init.c:
9              added dgCMatrix_colSums for [col,row][Sums,Means]
10    
11    2007-06-15 23:15  Douglas Bates <bates@stat.wisc.edu>
12    
13            * [r4460] R/sparseMatrix.R, man/dgCMatrix-class.Rd, src/dgCMatrix.c,
14              src/dgCMatrix.h, src/init.c: added lm.fit.sparse (unexported),
15              coercion of "factor" to "dgCMatrix" and dgCMatrix_cholsol
16            * [r4461] R/AllClass.R, man/sparseMatrix-class.Rd: draft "indicators"
17              class
18            * [r4463] R/sparseMatrix.R, man/dgCMatrix-class.Rd,
19              man/sparseMatrix-class.Rd: Don't need an "indicators" class - use the
20              row names to store the levels - duh!  Added an example.
21    
22    2007-06-14  Martin Maechler  <maechler@stat.math.ethz.ch>
23    
24            * src/Csparse.c (Csparse_validate): check for *repeated* entries
25            thanks to example from Christian Buchta; with a test here:
26            * tests/simple.R:
27    
28    2007-06-07  Martin Maechler  <maechler@stat.math.ethz.ch>
29    
30            * R/Auxiliaries.R (callGeneric): another fix, needed for some cases
31            of colSums(*, sparseResult = TRUE)
32    
33    2007-06-06  Martin Maechler  <maechler@stat.math.ethz.ch>
34    
35            * R/lsparseMatrix.R, R/ldenseMatrix.R (all, any): change default to
36            'na.rm = FALSE' as "everywhere" else in R.
37    
38    2007-06-05 Douglas Bates <bates@stat.wisc.edu>
39    
40            * [r4421] src/CSparse_install.sh: Modify for new organization of
41              CSparse package
42            * [r4425] src/UFsparse_download.sh: Update to version 3.0.0 of
43              SuiteSparse
44            * [r4426] src/Makefile: add ./UFconfig to the include path for
45              compilation
46            * [r4427] src/cs.[ch]: update to CSparse version 2.2.0
47            * [r4428] inst/doc/UFsparse/* src/{AMD,CHOLMOD,COLAMD}/*
48              src/UFconfig/UFconfig.h: Update to version 3.0.0 of SuiteSparse
49    
50    2007-06-05  Martin Maechler  <maechler@stat.math.ethz.ch>
51    
52            * R/Auxiliaries.R (emptyColnames): + argument msg.if.not.empty, used in
53            * R/sparseMatrix.R (prSpMatrix): now gives a message about
54            suppressed column names.
55    
56    2007-06-04 17:13  Douglas Bates <bates@stat.wisc.edu>
57    
58            * [r4418] src/Csparse.c, src/HBMM.c, src/Mutils.c, src/Mutils.h,
59              src/Tsparse.c, src/chm_common.c, src/chm_common.h, src/dgCMatrix.c,
60              src/dgeMatrix.c, src/dpoMatrix.c, src/dpoMatrix.h, src/dppMatrix.c,
61              src/dppMatrix.h, src/dsCMatrix.c, src/dspMatrix.c, src/dspMatrix.h,
62              src/dsyMatrix.c, src/dsyMatrix.h, src/dtpMatrix.c, src/dtrMatrix.c:
63              Remove warnings after change to const char* CHAR
64    
65    2007-06-04 17:11  Douglas Bates <bates@stat.wisc.edu>
66    
67            * [r4417] inst/include/Matrix_stubs.c, inst/include/cholmod.h: Corrected
68              type of M_cholmod_ssmult
69    
70    2007-06-03 14:42  Douglas Bates <bates@stat.wisc.edu>
71    
72            * [r4412] inst/include/Matrix_stubs.c, inst/include/cholmod.h,
73              src/init.c: Yet another cholmod export - cholmod_ssmult
74    
75    2007-05-23  Martin Maechler  <maechler@stat.math.ethz.ch>
76    
77            * NAMESPACE: exported drop0(), since
78            * man/drop0.Rd: I have seen several cases, I really wanted to use
79            it, so our users may want too.
80    
81    2007-05-22  Martin Maechler  <maechler@stat.math.ethz.ch>
82    
83            * man/colSums.Rd: separately document colSums() etc, since these
84            have the extra argument 'sparseResult'.
85    
86    2007-05-21  Martin Maechler  <maechler@stat.math.ethz.ch>
87    
88            * R/sparseMatrix.R (spMatrix): utility (T)sparse Matrix constructor;
89            * man/spMatrix.Rd: docu., including examples
90    
91            * R/Auxiliaries.R (sp.colMeans): etc, using a patched callGeneric(),
92            in order to make colMeans() etc fast *and* correct.
93            * R/sparseVector.R (replSPvec): "[<-" functionality for
94            sparseVectors; tested in
95            * tests/simple.R:
96    
97    2007-05-19  Martin Maechler  <maechler@stat.math.ethz.ch>
98    
99            * R/sparseMatrix.R (print.sparseSummary): and summary() method for
100            (very) sparse Matrices; output similar to Matlab's print().
101    
102    2007-05-17  Douglas Bates  <bates@stat.wisc.edu>
103    
104            * src/HBMM.c (Matrix_writeMatrixMarket): Write 1-based, not
105            0-based, indices (Jose Quesada <quesada@gmail.com>).
106    
107    2007-05-16  Douglas Bates  <bates@stat.wisc.edu>
108    
109            * R/CHMfactor.R: Added solve methods for a CHMfactor object.
110    
111    2007-05-16  Martin Maechler  <maechler@stat.math.ethz.ch>
112    
113            * R/Auxiliaries.R (sparsapply): new utility, much faster than
114            tapply1() for large sparse matrices.
115    
116    2007-05-15  Martin Maechler  <maechler@stat.math.ethz.ch>
117    
118            * R/Matrix.R (dim<-): reshape now via sparseVector.
119    
120            * R/sparseVector.R: methods and function for
121            * R/AllClass.R: new "sparseVector" class and daughters.
122            * NAMESPACE: export new classes
123    
124    2007-05-14  Martin Maechler  <maechler@stat.math.ethz.ch>
125    
126            * DESCRIPTION (Version): 0.99875-1
127            * src/Makefile.win: also remove Lapack code from here (cf. 04-25).
128    
129    2007-05-11  Martin Maechler  <maechler@stat.math.ethz.ch>
130    
131            * R/Tsparse.R ([, Tsparse): fix last case: *duplicated*, symmetric
132            indexing
133            * tests/indexing.R: test set for that.
134    
135    2007-05-08  Martin Maechler  <maechler@stat.math.ethz.ch>
136    
137            * R/Tsparse.R (replTmat): fix the case of *duplicated* index
138            entries.
139            * tests/indexing.R(out): add regression test for it
140    
141    2007-04-30  Martin Maechler  <maechler@stat.math.ethz.ch>
142    
143            * R/(l(dense|sparse))?Matrix.R (!): use 'x', not 'e1' as argument
144            name for "!" method definitions.
145    
146    2007-04-26  Martin Maechler  <maechler@stat.math.ethz.ch>
147    
148            * R/Tsparse.R (intI): new utility, used for "[" :
149                    Cleanup up there, and fixes for duplicated indices - more TODO!
150    
151            * tests/indexing.R(out): more tests
152    
153  2007-04-25  Douglas Bates  <bates@stat.wisc.edu>  2007-04-25  Douglas Bates  <bates@stat.wisc.edu>
154    
155          * DESCRIPTION,src/Makefile: require R>= 2.5.0 and remove Lapack          * DESCRIPTION,src/Makefile: require R>= 2.5.0 and remove Lapack
# Line 6  Line 158 
158          * src/init.c,inst/include/{Matrix_stubs.c,cholmod.h}:export          * src/init.c,inst/include/{Matrix_stubs.c,cholmod.h}:export
159          cholmod_factorize_p (used in lme4 for GLMMs and NLMMs).          cholmod_factorize_p (used in lme4 for GLMMs and NLMMs).
160    
161    2007-04-21  Martin Maechler  <maechler@stat.math.ethz.ch>
162    
163            * R/Matrix.R (image): method for all Matrices, not just sparse ones.
164    
165    2007-04-17  Martin Maechler  <maechler@stat.math.ethz.ch>
166    
167            * R/Auxiliaries.R (tapply1): unname(.) -> colSums() etc don't end
168            up with extraneous names '0'...'<n-1>'
169    
170  2007-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>  2007-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
171    
172          * R/dgTMatrix.R (mat2dgT): care about NAs          * R/dgTMatrix.R (mat2dgT): care about NAs

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