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revision 1827, Wed Apr 25 22:22:41 2007 UTC revision 1893, Thu Jun 14 10:46:10 2007 UTC
# Line 1  Line 1 
1    2007-06-14  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * src/Csparse.c (Csparse_validate): check for *repeated* entries
4            thanks to example from Christian Buchta; with a test here:
5            * tests/simple.R:
6    
7    2007-06-07  Martin Maechler  <maechler@stat.math.ethz.ch>
8    
9            * R/Auxiliaries.R (callGeneric): another fix, needed for some cases
10            of colSums(*, sparseResult = TRUE)
11    
12    2007-06-06  Martin Maechler  <maechler@stat.math.ethz.ch>
13    
14            * R/lsparseMatrix.R, R/ldenseMatrix.R (all, any): change default to
15            'na.rm = FALSE' as "everywhere" else in R.
16    
17    2007-06-05 Douglas Bates <bates@stat.wisc.edu>
18    
19            * [r4421] src/CSparse_install.sh: Modify for new organization of
20              CSparse package
21            * [r4425] src/UFsparse_download.sh: Update to version 3.0.0 of
22              SuiteSparse
23            * [r4426] src/Makefile: add ./UFconfig to the include path for
24              compilation
25            * [r4427] src/cs.[ch]: update to CSparse version 2.2.0
26            * [r4428] inst/doc/UFsparse/* src/{AMD,CHOLMOD,COLAMD}/*
27              src/UFconfig/UFconfig.h: Update to version 3.0.0 of SuiteSparse
28    
29    2007-06-05  Martin Maechler  <maechler@stat.math.ethz.ch>
30    
31            * R/Auxiliaries.R (emptyColnames): + argument msg.if.not.empty, used in
32            * R/sparseMatrix.R (prSpMatrix): now gives a message about
33            suppressed column names.
34    
35    2007-06-04 17:13  Douglas Bates <bates@stat.wisc.edu>
36    
37            * [r4418] src/Csparse.c, src/HBMM.c, src/Mutils.c, src/Mutils.h,
38              src/Tsparse.c, src/chm_common.c, src/chm_common.h, src/dgCMatrix.c,
39              src/dgeMatrix.c, src/dpoMatrix.c, src/dpoMatrix.h, src/dppMatrix.c,
40              src/dppMatrix.h, src/dsCMatrix.c, src/dspMatrix.c, src/dspMatrix.h,
41              src/dsyMatrix.c, src/dsyMatrix.h, src/dtpMatrix.c, src/dtrMatrix.c:
42              Remove warnings after change to const char* CHAR
43    
44    2007-06-04 17:11  Douglas Bates <bates@stat.wisc.edu>
45    
46            * [r4417] inst/include/Matrix_stubs.c, inst/include/cholmod.h: Corrected
47              type of M_cholmod_ssmult
48    
49    2007-06-03 14:42  Douglas Bates <bates@stat.wisc.edu>
50    
51            * [r4412] inst/include/Matrix_stubs.c, inst/include/cholmod.h,
52              src/init.c: Yet another cholmod export - cholmod_ssmult
53    
54    2007-05-23  Martin Maechler  <maechler@stat.math.ethz.ch>
55    
56            * NAMESPACE: exported drop0(), since
57            * man/drop0.Rd: I have seen several cases, I really wanted to use
58            it, so our users may want too.
59    
60    2007-05-22  Martin Maechler  <maechler@stat.math.ethz.ch>
61    
62            * man/colSums.Rd: separately document colSums() etc, since these
63            have the extra argument 'sparseResult'.
64    
65    2007-05-21  Martin Maechler  <maechler@stat.math.ethz.ch>
66    
67            * R/sparseMatrix.R (spMatrix): utility (T)sparse Matrix constructor;
68            * man/spMatrix.Rd: docu., including examples
69    
70            * R/Auxiliaries.R (sp.colMeans): etc, using a patched callGeneric(),
71            in order to make colMeans() etc fast *and* correct.
72            * R/sparseVector.R (replSPvec): "[<-" functionality for
73            sparseVectors; tested in
74            * tests/simple.R:
75    
76    2007-05-19  Martin Maechler  <maechler@stat.math.ethz.ch>
77    
78            * R/sparseMatrix.R (print.sparseSummary): and summary() method for
79            (very) sparse Matrices; output similar to Matlab's print().
80    
81    2007-05-17  Douglas Bates  <bates@stat.wisc.edu>
82    
83            * src/HBMM.c (Matrix_writeMatrixMarket): Write 1-based, not
84            0-based, indices (Jose Quesada <quesada@gmail.com>).
85    
86    2007-05-16  Douglas Bates  <bates@stat.wisc.edu>
87    
88            * R/CHMfactor.R: Added solve methods for a CHMfactor object.
89    
90    2007-05-16  Martin Maechler  <maechler@stat.math.ethz.ch>
91    
92            * R/Auxiliaries.R (sparsapply): new utility, much faster than
93            tapply1() for large sparse matrices.
94    
95    2007-05-15  Martin Maechler  <maechler@stat.math.ethz.ch>
96    
97            * R/Matrix.R (dim<-): reshape now via sparseVector.
98    
99            * R/sparseVector.R: methods and function for
100            * R/AllClass.R: new "sparseVector" class and daughters.
101            * NAMESPACE: export new classes
102    
103    2007-05-14  Martin Maechler  <maechler@stat.math.ethz.ch>
104    
105            * DESCRIPTION (Version): 0.99875-1
106            * src/Makefile.win: also remove Lapack code from here (cf. 04-25).
107    
108    2007-05-11  Martin Maechler  <maechler@stat.math.ethz.ch>
109    
110            * R/Tsparse.R ([, Tsparse): fix last case: *duplicated*, symmetric
111            indexing
112            * tests/indexing.R: test set for that.
113    
114    2007-05-08  Martin Maechler  <maechler@stat.math.ethz.ch>
115    
116            * R/Tsparse.R (replTmat): fix the case of *duplicated* index
117            entries.
118            * tests/indexing.R(out): add regression test for it
119    
120    2007-04-30  Martin Maechler  <maechler@stat.math.ethz.ch>
121    
122            * R/(l(dense|sparse))?Matrix.R (!): use 'x', not 'e1' as argument
123            name for "!" method definitions.
124    
125    2007-04-26  Martin Maechler  <maechler@stat.math.ethz.ch>
126    
127            * R/Tsparse.R (intI): new utility, used for "[" :
128                    Cleanup up there, and fixes for duplicated indices - more TODO!
129    
130            * tests/indexing.R(out): more tests
131    
132  2007-04-25  Douglas Bates  <bates@stat.wisc.edu>  2007-04-25  Douglas Bates  <bates@stat.wisc.edu>
133    
134          * DESCRIPTION,src/Makefile: require R>= 2.5.0 and remove Lapack          * DESCRIPTION,src/Makefile: require R>= 2.5.0 and remove Lapack
# Line 6  Line 137 
137          * src/init.c,inst/include/{Matrix_stubs.c,cholmod.h}:export          * src/init.c,inst/include/{Matrix_stubs.c,cholmod.h}:export
138          cholmod_factorize_p (used in lme4 for GLMMs and NLMMs).          cholmod_factorize_p (used in lme4 for GLMMs and NLMMs).
139    
140    2007-04-21  Martin Maechler  <maechler@stat.math.ethz.ch>
141    
142            * R/Matrix.R (image): method for all Matrices, not just sparse ones.
143    
144    2007-04-17  Martin Maechler  <maechler@stat.math.ethz.ch>
145    
146            * R/Auxiliaries.R (tapply1): unname(.) -> colSums() etc don't end
147            up with extraneous names '0'...'<n-1>'
148    
149  2007-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>  2007-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
150    
151          * R/dgTMatrix.R (mat2dgT): care about NAs          * R/dgTMatrix.R (mat2dgT): care about NAs

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