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revision 1827, Wed Apr 25 22:22:41 2007 UTC revision 1883, Wed Jun 6 14:24:58 2007 UTC
# Line 1  Line 1 
1    2007-06-06  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/lsparseMatrix.R, R/ldenseMatrix.R (all, any): change default to
4            'na.rm = FALSE' as "everywhere" else in R.
5    
6    2007-06-05 Douglas Bates <bates@stat.wisc.edu>
7    
8            * [r4421] src/CSparse_install.sh: Modify for new organization of
9              CSparse package
10            * [r4425] src/UFsparse_download.sh: Update to version 3.0.0 of
11              SuiteSparse
12            * [r4426] src/Makefile: add ./UFconfig to the include path for
13              compilation
14            * [r4427] src/cs.[ch]: update to CSparse version 2.2.0
15            * [r4428] inst/doc/UFsparse/* src/{AMD,CHOLMOD,COLAMD}/*
16              src/UFconfig/UFconfig.h: Update to version 3.0.0 of SuiteSparse
17    
18    2007-06-05  Martin Maechler  <maechler@stat.math.ethz.ch>
19    
20            * R/Auxiliaries.R (emptyColnames): + argument msg.if.not.empty, used in
21            * R/sparseMatrix.R (prSpMatrix): now gives a message about
22            suppressed column names.
23    
24    2007-06-04 17:13  Douglas Bates <bates@stat.wisc.edu>
25    
26            * [r4418] src/Csparse.c, src/HBMM.c, src/Mutils.c, src/Mutils.h,
27              src/Tsparse.c, src/chm_common.c, src/chm_common.h, src/dgCMatrix.c,
28              src/dgeMatrix.c, src/dpoMatrix.c, src/dpoMatrix.h, src/dppMatrix.c,
29              src/dppMatrix.h, src/dsCMatrix.c, src/dspMatrix.c, src/dspMatrix.h,
30              src/dsyMatrix.c, src/dsyMatrix.h, src/dtpMatrix.c, src/dtrMatrix.c:
31              Remove warnings after change to const char* CHAR
32    
33    2007-06-04 17:11  Douglas Bates <bates@stat.wisc.edu>
34    
35            * [r4417] inst/include/Matrix_stubs.c, inst/include/cholmod.h: Corrected
36              type of M_cholmod_ssmult
37    
38    2007-06-03 14:42  Douglas Bates <bates@stat.wisc.edu>
39    
40            * [r4412] inst/include/Matrix_stubs.c, inst/include/cholmod.h,
41              src/init.c: Yet another cholmod export - cholmod_ssmult
42    
43    2007-05-23  Martin Maechler  <maechler@stat.math.ethz.ch>
44    
45            * NAMESPACE: exported drop0(), since
46            * man/drop0.Rd: I have seen several cases, I really wanted to use
47            it, so our users may want too.
48    
49    2007-05-22  Martin Maechler  <maechler@stat.math.ethz.ch>
50    
51            * man/colSums.Rd: separately document colSums() etc, since these
52            have the extra argument 'sparseResult'.
53    
54    2007-05-21  Martin Maechler  <maechler@stat.math.ethz.ch>
55    
56            * R/sparseMatrix.R (spMatrix): utility (T)sparse Matrix constructor;
57            * man/spMatrix.Rd: docu., including examples
58    
59            * R/Auxiliaries.R (sp.colMeans): etc, using a patched callGeneric(),
60            in order to make colMeans() etc fast *and* correct.
61            * R/sparseVector.R (replSPvec): "[<-" functionality for
62            sparseVectors; tested in
63            * tests/simple.R:
64    
65    2007-05-19  Martin Maechler  <maechler@stat.math.ethz.ch>
66    
67            * R/sparseMatrix.R (print.sparseSummary): and summary() method for
68            (very) sparse Matrices; output similar to Matlab's print().
69    
70    2007-05-17  Douglas Bates  <bates@stat.wisc.edu>
71    
72            * src/HBMM.c (Matrix_writeMatrixMarket): Write 1-based, not
73            0-based, indices (Jose Quesada <quesada@gmail.com>).
74    
75    2007-05-16  Douglas Bates  <bates@stat.wisc.edu>
76    
77            * R/CHMfactor.R: Added solve methods for a CHMfactor object.
78    
79    2007-05-16  Martin Maechler  <maechler@stat.math.ethz.ch>
80    
81            * R/Auxiliaries.R (sparsapply): new utility, much faster than
82            tapply1() for large sparse matrices.
83    
84    2007-05-15  Martin Maechler  <maechler@stat.math.ethz.ch>
85    
86            * R/Matrix.R (dim<-): reshape now via sparseVector.
87    
88            * R/sparseVector.R: methods and function for
89            * R/AllClass.R: new "sparseVector" class and daughters.
90            * NAMESPACE: export new classes
91    
92    2007-05-14  Martin Maechler  <maechler@stat.math.ethz.ch>
93    
94            * DESCRIPTION (Version): 0.99875-1
95            * src/Makefile.win: also remove Lapack code from here (cf. 04-25).
96    
97    2007-05-11  Martin Maechler  <maechler@stat.math.ethz.ch>
98    
99            * R/Tsparse.R ([, Tsparse): fix last case: *duplicated*, symmetric
100            indexing
101            * tests/indexing.R: test set for that.
102    
103    2007-05-08  Martin Maechler  <maechler@stat.math.ethz.ch>
104    
105            * R/Tsparse.R (replTmat): fix the case of *duplicated* index
106            entries.
107            * tests/indexing.R(out): add regression test for it
108    
109    2007-04-30  Martin Maechler  <maechler@stat.math.ethz.ch>
110    
111            * R/(l(dense|sparse))?Matrix.R (!): use 'x', not 'e1' as argument
112            name for "!" method definitions.
113    
114    2007-04-26  Martin Maechler  <maechler@stat.math.ethz.ch>
115    
116            * R/Tsparse.R (intI): new utility, used for "[" :
117                    Cleanup up there, and fixes for duplicated indices - more TODO!
118    
119            * tests/indexing.R(out): more tests
120    
121  2007-04-25  Douglas Bates  <bates@stat.wisc.edu>  2007-04-25  Douglas Bates  <bates@stat.wisc.edu>
122    
123          * DESCRIPTION,src/Makefile: require R>= 2.5.0 and remove Lapack          * DESCRIPTION,src/Makefile: require R>= 2.5.0 and remove Lapack
# Line 6  Line 126 
126          * src/init.c,inst/include/{Matrix_stubs.c,cholmod.h}:export          * src/init.c,inst/include/{Matrix_stubs.c,cholmod.h}:export
127          cholmod_factorize_p (used in lme4 for GLMMs and NLMMs).          cholmod_factorize_p (used in lme4 for GLMMs and NLMMs).
128    
129    2007-04-21  Martin Maechler  <maechler@stat.math.ethz.ch>
130    
131            * R/Matrix.R (image): method for all Matrices, not just sparse ones.
132    
133    2007-04-17  Martin Maechler  <maechler@stat.math.ethz.ch>
134    
135            * R/Auxiliaries.R (tapply1): unname(.) -> colSums() etc don't end
136            up with extraneous names '0'...'<n-1>'
137    
138  2007-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>  2007-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
139    
140          * R/dgTMatrix.R (mat2dgT): care about NAs          * R/dgTMatrix.R (mat2dgT): care about NAs

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