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revision 1827, Wed Apr 25 22:22:41 2007 UTC revision 1878, Tue Jun 5 17:08:18 2007 UTC
# Line 1  Line 1 
1    2007-06-05 Douglas Bates <bates@stat.wisc.edu>
2    
3            * [r4421] src/CSparse_install.sh: Modify for new organization of
4              CSparse package
5            * [r4425] src/UFsparse_download.sh: Update to version 3.0.0 of
6              SuiteSparse
7            * [r4426] src/Makefile: add ./UFconfig to the include path for
8              compilation
9            * [r4427] src/cs.c, src/cs.h: update to CSparse version 2.2.0
10            * [r4428] inst/doc/UFsparse/* src/AMD/* src/CHOLMOD/*
11              src/COLAMD/* src/UFconfig/UFconfig.h: Update to version 3.0.0 of
12              SuiteSparse
13    
14    2007-06-05  Martin Maechler  <maechler@stat.math.ethz.ch>
15    
16            * R/Auxiliaries.R (emptyColnames): + argument msg.if.not.empty, used in
17            * R/sparseMatrix.R (prSpMatrix): now gives a message about
18            suppressed column names.
19    
20    2007-06-04 17:13  Douglas Bates <bates@stat.wisc.edu>
21    
22            * [r4418] src/Csparse.c, src/HBMM.c, src/Mutils.c, src/Mutils.h,
23              src/Tsparse.c, src/chm_common.c, src/chm_common.h, src/dgCMatrix.c,
24              src/dgeMatrix.c, src/dpoMatrix.c, src/dpoMatrix.h, src/dppMatrix.c,
25              src/dppMatrix.h, src/dsCMatrix.c, src/dspMatrix.c, src/dspMatrix.h,
26              src/dsyMatrix.c, src/dsyMatrix.h, src/dtpMatrix.c, src/dtrMatrix.c:
27              Remove warnings after change to const char* CHAR
28    
29    2007-06-04 17:11  Douglas Bates <bates@stat.wisc.edu>
30    
31            * [r4417] inst/include/Matrix_stubs.c, inst/include/cholmod.h: Corrected
32              type of M_cholmod_ssmult
33    
34    2007-06-03 14:42  Douglas Bates <bates@stat.wisc.edu>
35    
36            * [r4412] inst/include/Matrix_stubs.c, inst/include/cholmod.h,
37              src/init.c: Yet another cholmod export - cholmod_ssmult
38    
39    2007-05-23  Martin Maechler  <maechler@stat.math.ethz.ch>
40    
41            * NAMESPACE: exported drop0(), since
42            * man/drop0.Rd: I have seen several cases, I really wanted to use
43            it, so our users may want too.
44    
45    2007-05-22  Martin Maechler  <maechler@stat.math.ethz.ch>
46    
47            * man/colSums.Rd: separately document colSums() etc, since these
48            have the extra argument 'sparseResult'.
49    
50    2007-05-21  Martin Maechler  <maechler@stat.math.ethz.ch>
51    
52            * R/sparseMatrix.R (spMatrix): utility (T)sparse Matrix constructor;
53            * man/spMatrix.Rd: docu., including examples
54    
55            * R/Auxiliaries.R (sp.colMeans): etc, using a patched callGeneric(),
56            in order to make colMeans() etc fast *and* correct.
57            * R/sparseVector.R (replSPvec): "[<-" functionality for
58            sparseVectors; tested in
59            * tests/simple.R:
60    
61    2007-05-19  Martin Maechler  <maechler@stat.math.ethz.ch>
62    
63            * R/sparseMatrix.R (print.sparseSummary): and summary() method for
64            (very) sparse Matrices; output similar to Matlab's print().
65    
66    2007-05-17  Douglas Bates  <bates@stat.wisc.edu>
67    
68            * src/HBMM.c (Matrix_writeMatrixMarket): Write 1-based, not
69            0-based, indices (Jose Quesada <quesada@gmail.com>).
70    
71    2007-05-16  Douglas Bates  <bates@stat.wisc.edu>
72    
73            * R/CHMfactor.R: Added solve methods for a CHMfactor object.
74    
75    2007-05-16  Martin Maechler  <maechler@stat.math.ethz.ch>
76    
77            * R/Auxiliaries.R (sparsapply): new utility, much faster than
78            tapply1() for large sparse matrices.
79    
80    2007-05-15  Martin Maechler  <maechler@stat.math.ethz.ch>
81    
82            * R/Matrix.R (dim<-): reshape now via sparseVector.
83    
84            * R/sparseVector.R: methods and function for
85            * R/AllClass.R: new "sparseVector" class and daughters.
86            * NAMESPACE: export new classes
87    
88    2007-05-14  Martin Maechler  <maechler@stat.math.ethz.ch>
89    
90            * DESCRIPTION (Version): 0.99875-1
91            * src/Makefile.win: also remove Lapack code from here (cf. 04-25).
92    
93    2007-05-11  Martin Maechler  <maechler@stat.math.ethz.ch>
94    
95            * R/Tsparse.R ([, Tsparse): fix last case: *duplicated*, symmetric
96            indexing
97            * tests/indexing.R: test set for that.
98    
99    2007-05-08  Martin Maechler  <maechler@stat.math.ethz.ch>
100    
101            * R/Tsparse.R (replTmat): fix the case of *duplicated* index
102            entries.
103            * tests/indexing.R(out): add regression test for it
104    
105    2007-04-30  Martin Maechler  <maechler@stat.math.ethz.ch>
106    
107            * R/(l(dense|sparse))?Matrix.R (!): use 'x', not 'e1' as argument
108            name for "!" method definitions.
109    
110    2007-04-26  Martin Maechler  <maechler@stat.math.ethz.ch>
111    
112            * R/Tsparse.R (intI): new utility, used for "[" :
113                    Cleanup up there, and fixes for duplicated indices - more TODO!
114    
115            * tests/indexing.R(out): more tests
116    
117  2007-04-25  Douglas Bates  <bates@stat.wisc.edu>  2007-04-25  Douglas Bates  <bates@stat.wisc.edu>
118    
119          * DESCRIPTION,src/Makefile: require R>= 2.5.0 and remove Lapack          * DESCRIPTION,src/Makefile: require R>= 2.5.0 and remove Lapack
# Line 6  Line 122 
122          * src/init.c,inst/include/{Matrix_stubs.c,cholmod.h}:export          * src/init.c,inst/include/{Matrix_stubs.c,cholmod.h}:export
123          cholmod_factorize_p (used in lme4 for GLMMs and NLMMs).          cholmod_factorize_p (used in lme4 for GLMMs and NLMMs).
124    
125    2007-04-21  Martin Maechler  <maechler@stat.math.ethz.ch>
126    
127            * R/Matrix.R (image): method for all Matrices, not just sparse ones.
128    
129    2007-04-17  Martin Maechler  <maechler@stat.math.ethz.ch>
130    
131            * R/Auxiliaries.R (tapply1): unname(.) -> colSums() etc don't end
132            up with extraneous names '0'...'<n-1>'
133    
134  2007-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>  2007-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
135    
136          * R/dgTMatrix.R (mat2dgT): care about NAs          * R/dgTMatrix.R (mat2dgT): care about NAs

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