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revision 1599, Fri Sep 29 09:39:50 2006 UTC revision 1682, Fri Dec 1 18:42:40 2006 UTC
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1    2006-11-30  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/diagMatrix.R (%*%): write a direct [diag o Csparse] method
4    
5    2006-11-29  Douglas Bates  <bates@stat.wisc.edu>
6    
7            * src/dgeMatrix.c (dgeMatrix_solve): Check error code from dgetri.
8            * tests/dg_Matrix.R: Add Barry Rowlingson's test of a matrix that
9            is exactly singular.
10    
11    2006-11-07  Martin Maechler  <maechler@stat.math.ethz.ch>
12    
13            * DESCRIPTION (Date): updated -> release 0.9975-6
14    
15    2006-11-06  Martin Maechler  <maechler@stat.math.ethz.ch>
16    
17            * R/Csparse.R (replCmat): symmetric indexing of symmetric matrix
18            now returns symmetric.
19    
20            * R/zzz.R ("diag<-"): replace "diag<-" in base for R <= 2.4.x
21    
22            * R/Matrix.R (.M.sub.i.2col):  new, for  M[ cbind(i,j) ] indexing.
23            * R/Matrix.R (.M.repl.i.2col): new, for  M[ cbind(i,j) ] <- value
24    
25            * R/Auxiliaries.R (.type.kind): added
26    
27    2006-11-04  Martin Maechler  <maechler@stat.math.ethz.ch>
28    
29            * src/cs.[ch]: updated to CSparse Version 2.0.3 by simply
30            running src/CSparse_install.sh
31    
32            * R/denseMatrix.R: "[": keep symmetric on symmetric indexing.
33    
34    2006-11-03  Martin Maechler  <maechler@stat.math.ethz.ch>
35    
36            * src/dsCMatrix.c (dsCMatrix_Csparse_solve): new
37            * R/dsCMatrix.R (solve): "fully-sparse" using the above.
38    
39            * R/AllClass.R: "pMatrix" now also inherits from "generalMatrix"
40    
41            * tests/Class+Meth.R (tstMatrixClass): now assure
42            the (important in method programming) property :
43    
44                    ###>>  Every "Matrix" is either
45                    ###>>  "general*", "symmetric*", "triangular*" or "diagonal*"
46    
47                    (where "*" stands for "Matrix")
48    
49            * R/Auxiliaries.R (diagU2N): now .Call()s Csparse_diagU2N for <Csparse>
50    
51            * R/dMatrix.R (Compare(<dMatrix>,<dMatrix>): update and
52            * tests/validObj.R: checks for "comparison"
53    
54            * R/sparseMatrix.R ([): improved indexing for sparse;
55                    trying to keep <symmetric>[ n, n] symmmetric
56    
57            * tests/indexing.R: indexing for logical sparse now ok
58    
59    
60    2006-11-02  Martin Maechler  <maechler@stat.math.ethz.ch>
61    
62            * src/Tsparse.c: use xTsparse_validate() , and hence remove
63    
64            * src/{ltC,lsC,lgT}Matrix.[ch]: removed
65    
66    2006-11-02  Martin Maechler  <maechler@stat.math.ethz.ch>
67    
68            * R/AllClass.R (Matrix-class): check length of dimnames in validity.
69    
70            * tests/simple.R: validObject() checking the above.
71    
72            * src/dgCMatrix.c (xCMatrix_validate): new, small and simple,
73            replacing both dgCMatrix_validate and lgCM*.
74    
75            * src/Csparse.c (Csparse_dense_prod, etc): do not lose dimnames;
76            fix dimnames setting in other places.
77            * src/chm_common.c (chm_dense_to_SEXP): now can pass dimnames
78    
79    2006-11-01  Martin Maechler  <maechler@stat.math.ethz.ch>
80    
81            * R/Csparse.R,src/Csparse.c, etc: tcrossprod(<CsparseM>,<CsparseM>)
82    
83            * R/sparseMatrix.R (isSymmetric): drop 'factors' slot for
84            symmetry test, via
85            * R/Auxiliaries.R (.as.dgC.0.factors):
86    
87    2006-11-01  Douglas Bates  <bates@r-project.org>
88    
89            * R/Csparse.R,src/Csparse.c,tests/matprod.R,
90            man/CsparseMatrix-class.Rd: crossprod(<CsparseMatrix>,
91            <CsparseMatrix>) added
92    
93    2006-10-30  Martin Maechler  <maechler@stat.math.ethz.ch>
94    
95            * tests/matprod.R: add a variation of Harri's example
96    
97            * R/dsparseMatrix.R: fix crossprod(<dsparse>, <dge>) to *not*
98            recursive infinitely.
99    
100            * R/dgCMatrix.R: + solve(<sparse>, <sparse>)
101    
102            * tests/indexing.R: add test for the "<" bug fixed 10-27 in R/dMatrix.R
103    
104    2006-10-28  Martin Maechler  <maechler@stat.math.ethz.ch>
105    
106            * tests/Class+Meth.R (tstMatrixClass): more: use non-trivial
107            matrix if possible; test m+m == 2*m; now test dgRMatrix.
108            * R/dgRMatrix.R (.to.dgR): a few more coercions, in order to
109            satisfy the above test.
110    
111    2006-10-27  Martin Maechler  <maechler@stat.math.ethz.ch>
112    
113            * R/Matrix.R (Ops):  <Matrix> o <matrix>  method added
114    
115            * R/dgCMatrix.R: solve(a, b="missing") based on
116            * src/dgCMatrix.c (dgCMatrix_matrix_solve): extend to work with
117            RHS = NULL.
118    
119            * R/diagMatrix.R (diagdiagprod): extend %*% etc to ldiMatrix;
120            add more (needed) [t]crossprod() methods.
121    
122            * man/ddiMatrix-class.Rd: more info, notably on 'diag'
123    
124            * R/Auxiliaries.R (as_CspClass): cleanup
125            (drop0): internal utility for "Csparse_drop(*, 0)"
126            (.bail.out.2): encourage active feedback
127    
128    2006-10-26  Martin Maechler  <maechler@stat.math.ethz.ch>
129    
130            * R/dMatrix.R(Compare): new(), then slots [no validity check]
131    
132            * src/Csparse.c (Csparse_validate): fixed (and more efficient in
133            non-valid or 'sorted' case).
134    
135            * R/dsparseMatrix.R: add "chol" method.
136            * R/ddenseMatrix.R: ditto
137    
138            * R/diagMatrix.R (Ops): group methods for  <diagonal> o <sparse>
139            * NAMESPACE (Ops)
140            * R/diagMatrix.R (diag2T): simple utility used "higher level"
141            coercion; deprecating direct lower level coercions.
142    
143            * R/*.R (seq): use seq_len() and seq_along() where possible.
144    
145    
146    2006-10-23  Martin Maechler  <maechler@stat.math.ethz.ch>
147    
148            * DESCRIPTION (Version): 0.9975-5 ready for release
149    
150    2006-10-20  Douglas Bates  <bates@stat.wisc.edu>
151    
152            * src/init.c (R_init_Matrix): export more cholmod CCallable functions.
153    
154    2006-10-20  Martin Maechler  <maechler@stat.math.ethz.ch>
155    
156            * R/AllClass.R (corMatrix): add 'validity' check;
157                    comment out unused "LDL" class definition
158            * NAMESPACE: mention, but do not export "LDL" class
159            * R/corMatrix.R: new (simple), needed for R-devel with
160            * tests/Class+Meth.R (tstMatrixClass): 1 exception for corMatrix
161              coerce and t() exceptions for all 5 'Mat.MatFact' classes.
162    
163    2006-10-19  Douglas Bates  <bates@stat.wisc.edu>
164    
165            * src/chm_common.h: Add R_cholmod_start to initialize cholmod to
166            use Rprintf and R's error handling.
167    
168    2006-10-17  Martin Maechler  <maechler@stat.math.ethz.ch>
169    
170            * R/diagMatrix.R (%*%): rep(*, each = .) in Matrix %*% diagonal.
171            * tests/matprod.R: add tests for the bug fixed.
172    
173    2006-10-11  Douglas Bates  <bates@stat.wisc.edu>
174    
175            * src/HBMM.[ch]: remove HarwellBoeing format for writing.
176            * src/SOURCES_C.mkf (SOURCES_C): no longer compile iohb.c
177    
178    2006-10-06  Douglas Bates  <bates@stat.wisc.edu>
179    
180            * R/d[gs]CMatrix.R: deprecate the writeHB function.  Use writeMM instead.
181    
182    2006-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
183    
184            * DESCRIPTION (Version): 0.9975-3
185    
186            * R/diagMatrix.R (bdiag): new function constructing block diagonal
187            (sparse) matrices.
188            * man/bdiag.Rd: docu + examples
189    
190            * R/Csparse.R (replCmat): calling new Csparse_drop() now.
191    
192            * src/Csparse.c (Csparse_general_to_symmetric, Csparse_drop): new functions
193            * R/lsCMatrix.R: three more coercions to lsC (thanks to the above)
194    
195            * R/diagMatrix.R (Diagonal): '[<-' method for diag.matrices such
196            that result is sparse or diagonal (and not dense).
197    
198            * man/Subassign-methods.Rd: fix examples
199    
200            * R/Matrix.R (Matrix):  Matrix(0, *) or Matrix(*, sparse=TRUE)
201            should always return a sparse (and not sometimes a diagonal) matrix.
202    
203    2006-10-05  Martin Maechler  <maechler@stat.math.ethz.ch>
204    
205            * R/Matrix.R ([<-): also for value "Matrix" or "matrix"
206    
207    2006-10-04  Douglas Bates  <bates@stat.wisc.edu>
208    
209            * DESCRIPTION (Version): 0.9975-2
210    
211            * inst/include/Matrix_stubs.c (M_cholmod_sparse_to_triplet): export more symbols
212    
213    2006-10-02  Douglas Bates  <bates@R-project.org>
214    
215            * tests/dg_Matrix.R: Simplify test taking into account new code.
216    
217  2006-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>  2006-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
218    
219            * R/Csparse.R (replCmat): improve for missing i / j in non-simple cases
220    
221          * R/lsTMatrix.R: new files w/ missing methods          * R/lsTMatrix.R: new files w/ missing methods
222          * R/nsTMatrix.R:  "  'for completeness'          * R/nsTMatrix.R:  "  'for completeness'
223    

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