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Diff of /pkg/ChangeLog

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revision 1548, Mon Sep 11 22:13:07 2006 UTC revision 1600, Fri Sep 29 13:37:25 2006 UTC
# Line 1  Line 1 
1    2006-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/Csparse.R (replCmat): improve for missing i / j in non-simple cases
4    
5            * R/lsTMatrix.R: new files w/ missing methods
6            * R/nsTMatrix.R:  "  'for completeness'
7    
8            * tests/Class+Meth.R: a bit less 'not.ok.classes'
9    
10            * R/Tsparse.R (t): generalized "t" method from "dgT*" to "Tsparse*"
11    
12    
13    2006-09-28  Douglas Bates  <bates@R-project.org>
14    
15            * src/dppMatrix.h: Ensure definition of dspMatrix_validate is
16            included.
17    
18            * src/init.c, inst/include/{Matrix.h,Matrix_stubs.h,cholmod.h}:
19            Export C-callable functions used in Zt_create in lme4.
20    
21    2006-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
22    
23            * DESCRIPTION (Version): 0.9975-1
24    
25            * tests/simple.R: less checks fail; using NA, found that our
26                    kronecker() is not base-compatible with NA's.
27    
28            * R/dMatrix.R: "Compare" method now implemented for all cases
29    
30            * R/Auxiliaries.R (indTri): == which([lower/upper].tri( * )) new utility
31    
32            * man/dtpMatrix-class.Rd: mention length of 'x' slot
33    
34            * src/dtpMatrix.c (dtpMatrix_validate): fix check
35            * src/dspMatrix.c (dspMatrix_validate): ditto
36    
37            * R/dtTMatrix.R (gt2tT): fix ("l" -> "n")
38              including coercion to [nl]tTMatrix.
39    
40            * R/diagMatrix.R (show): print a header line as for other classes.
41    
42    2006-09-27  Martin Maechler  <maechler@stat.math.ethz.ch>
43    
44            * src/Makefile.win (SUBDIRS): fix typo
45    
46    2006-09-19  Martin Maechler  <maechler@stat.math.ethz.ch>
47    
48            * DESCRIPTION (Date): ready to release 0.9975-0 to CRAN
49    
50    2006-09-18  Douglas Bates  <bates@stat.wisc.edu>
51    
52            * R/[CT]sparse.R (crossprod and tcrossprod): Handle the cases for x
53            symmetric and y missing in R code using %*% (cholmod_aat doesn't
54            accept a symmetric matrix).
55            * tests/group-methods.R: Uncomment test of crossprod applied to
56            lsCMatrix objects.
57    
58    2006-09-18  Martin Maechler  <maechler@stat.math.ethz.ch>
59    
60            * R/AllClass.R (symmetricMatrix): add validity method (available
61            in C for a long time). Many "n..Matrix": drop (wrong) validity arg.
62    
63            * src/lgCMatrix.c (lgCMatrix_validate): check 'x' slot (!)
64    
65            * tests/indexing.Rout.save:
66            * tests/indexing.R: additions, mainly for 'lsparse'
67    
68            * R/diagMatrix.R (Diagonal) & coercion to lgTMatrix: fixes for NA
69            case.
70    
71            * R/Auxiliaries.R (nz.NA): new utility now used in nnzero()
72    
73    2006-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
74    
75            * R/sparseMatrix.R (prSpMatrix): print logical NAs "visibly"
76                    as 'N' (1-letter - Ok?)
77    
78            * tests/group-methods.R: add test for logical + NAs
79    
80            * R/dMatrix.R ("Compare"): fix to work with NA's
81    
82            * R/AllClass.R: "Cholesky" etc now inherit from MatrixFactorization.
83    
84            * src/lgCMatrix.c (ncsc_to_matrix): renamed from lcsc_to_matrix()
85                    which is implemented.
86    
87    2006-09-15  Martin Maechler  <maechler@stat.math.ethz.ch>
88    
89            * src/chm_common.c: coerce logical <-> double instead of
90            typecasting;  needed for "l" matrix handling in cholmod.
91    
92            * tests/other-pkgs.R (graph): small extension in "graph" checks.
93    
94            * R/sparseMatrix.R (graphNEL -> Tsparse): method for weight case.
95            (Tsp2grNEL): other fixes needed
96    
97  2006-09-11  Martin Maechler  <maechler@stat.math.ethz.ch>  2006-09-11  Martin Maechler  <maechler@stat.math.ethz.ch>
98    
99          * R/AllClass.R ("nMatrix"): and subclasses for "nonzero pattern"          * R/AllClass.R ("nMatrix"): and subclasses for "nonzero pattern"
# Line 7  Line 103 
103          * tests/: adaptions          * tests/: adaptions
104          * src/chm_common.c (chm_dense_to_SEXP): and others:          * src/chm_common.c (chm_dense_to_SEXP): and others:
105                  new 'Rkind' argument: "l*" and "d*" both use CHOLMOD_REAL                  new 'Rkind' argument: "l*" and "d*" both use CHOLMOD_REAL
106          * src/Csparse.c, etc: dito          * src/Csparse.c, etc: ditto
107    
108  2006-09-11  Douglas Bates  <bates@R-project.org>  2006-09-11  Douglas Bates  <bates@R-project.org>
109    
# Line 26  Line 122 
122          * R/sparseMatrix.R (Tsp2grNEL): do not yet use graph::foo()          * R/sparseMatrix.R (Tsp2grNEL): do not yet use graph::foo()
123    
124          * R/dgeMatrix.R: do not define tcrossprod() methods for "matrix"          * R/dgeMatrix.R: do not define tcrossprod() methods for "matrix"
125          * man/tcrossprod.Rd: dito          * man/tcrossprod.Rd: ditto
126    
127  2006-09-08  Douglas Bates  <bates@stat.wisc.edu>  2006-09-08  Douglas Bates  <bates@stat.wisc.edu>
128    
# Line 69  Line 165 
165    
166          * R/sparseMatrix.R (Arith): moved Arith group method one-level up          * R/sparseMatrix.R (Arith): moved Arith group method one-level up
167          from "dsparse" to "sparse" and now go via "Csparse" instead of "dgC"          from "dsparse" to "sparse" and now go via "Csparse" instead of "dgC"
168          * R/dsparseMatrix.R: dito          * R/dsparseMatrix.R: ditto
169          * R/Csparse.R: dito          * R/Csparse.R: ditto
170    
171  2006-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>  2006-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
172    
# Line 86  Line 182 
182    
183          * R/Auxiliaries.R (all0, is0): for 0-testing in presence of NA's          * R/Auxiliaries.R (all0, is0): for 0-testing in presence of NA's
184          * R/Auxiliaries.R (isTriMat): use all0() for 0-testing.          * R/Auxiliaries.R (isTriMat): use all0() for 0-testing.
185          (.is.diagonal): dito          (.is.diagonal): ditto
186    
187          * R/lgTMatrix.R: as("matrix", "lgTMatrix"): warn about NA's          * R/lgTMatrix.R: as("matrix", "lgTMatrix"): warn about NA's
188    

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