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Diff of /pkg/ChangeLog

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revision 1431, Wed Aug 23 22:13:53 2006 UTC revision 1507, Mon Sep 4 18:41:34 2006 UTC
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1  2006-08-23  Douglas Bates  <bates@dyn-51-128.uwnet.wisc.edu>  2006-09-04  Douglas Bates  <bates@R-project.org>
2    
3          * R/AllClass.R,src/SOURCES_C.mkf,init.c,NAMESPACE: Remove classes          * src/dtCMatrix.c (dtCMatrix_validate): rename functions.
4          lCholCMatrix and dCholCMatrix based on R_ldl code.          * src/DEPS.mkf: update
5    
6    2006-09-02  Martin Maechler  <maechler@stat.math.ethz.ch>
7    
8            * created branches/Matrix-for-R-2.3.x;  on trunk: do
9            * DESCRIPTION (Version): 0.9975-0
10            (Depends): R (>= 2.4.0)
11    
12    2006-09-01  Douglas Bates  <bates@R-project.org>
13    
14            * R/sparseMatrix.R: Added direct method to CsparseMatrix from graphNEL
15    
16    2006-09-01  Martin Maechler  <maechler@stat.math.ethz.ch>
17    
18            * R/sparseMatrix.R: add coercion from "ANY" to "sparseMatrix"
19            * R/denseMatrix.R:  add coercion from "ANY" to "denseMatrix"
20    
21            * R/Matrix.R ([): use nargs() to disambiguate M[i] and M[i,]
22    
23    2006-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
24    
25            * R/sparseMatrix.R (Arith): moved Arith group method one-level up
26            from "dsparse" to "sparse" and now go via "Csparse" instead of "dgC"
27            * R/dsparseMatrix.R: dito
28            * R/Csparse.R: dito
29    
30    2006-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
31    
32            * R/dMatrix.R (Compare): improve availability of "<", etc
33            * R/Auxiliaries.R (asTuniq): new; also make use of R 2.4.x print(*,max)
34    
35    2006-08-30  Martin Maechler  <maechler@stat.math.ethz.ch>
36    
37            * R/dgCMatrix.R: aargh: "Arith(<dgC>, numeric)" was wrong because
38            of a 0-index which was used as 1-index (..hmm)
39    
40            * R/sparseMatrix.R (prSpMatrix): fix printing an all-0 sparse Matrix
41    
42            * R/Auxiliaries.R (all0, is0): for 0-testing in presence of NA's
43            * R/Auxiliaries.R (isTriMat): use all0() for 0-testing.
44            (.is.diagonal): dito
45    
46            * R/lgTMatrix.R: as("matrix", "lgTMatrix"): warn about NA's
47    
48            * R/Matrix.R (Matrix): also work for NA data
49    
50    2006-08-28  Martin Maechler  <maechler@stat.math.ethz.ch>
51    
52            * R/Matrix.R (Matrix): + 'forceCheck' argument; dimnames setting
53            in all cases.
54    
55    2006-08-27  Douglas Bates  <bates@R-project.org>
56    
57            * src/dense.[ch],init.c, R/ddenseMatrix.R, man/band.Rd
58            (ddense_band): Added triu, tril and band for ddenseMatrix objects.
59    
60    2006-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
61    
62            * src/Mutils.c (dup_mMatrix_as_dgeMatrix): added all subclasses of
63            subclasses of "ddenseMatrix"
64            * src/init.c et al: outcomment dtrM*_as_dge* and dsyM*_as_dge*_
65            * R/ddenseMatrix.R et al: setAs("ddenseMatrix", "dgeMatrix", ..)
66            instead of half dozen specialized ones.
67    
68    2006-08-25  Douglas Bates  <bates@R-project.org>
69    
70            * R/lmer.R (qqmath method): Bug fix provided by Emmanuel Tillard
71            <tillard@cirad.fr> - ordering standard errors to match effects.
72    
73    2006-08-24  Douglas Bates  <bates@R-project.org>
74    
75            * src/lsCMatrix.c (lsCMatrix_trans): Remove lsCMatrix_chol based
76            on R_ldl.
77            * R/lCholCMatrix.R,
78            src/[dl]CholCMatrix.[ch],R_ldl.[ch],Metis_utils.[ch]: removed
79            * src/dsCMatrix.c (dsCMatrix_to_dgTMatrix): use CHOLMOD
80            * many files in ./R and ./src: Use more general version of
81            dup_mMatrix_as_dgeMatrix to simplify method definitions.
82            * src/Mutils.c (dup_mMatrix_as_dgeMatrix): Add ddiMatrix,
83            dtpMatrix, dspMatrix and dppMatrix conversions.
84    
85    
86    2006-08-23  Douglas Bates  <bates@R-project.org>
87    
88            * R/AllClass.R,lCholCMatrix.R,src/SOURCES_C.mkf,init.c,NAMESPACE:
89            Remove classes lCholCMatrix and dCholCMatrix based on R_ldl code.
90          * src/dgeMatrix.c: Ensure 'factors' slot exists in result of          * src/dgeMatrix.c: Ensure 'factors' slot exists in result of
91          dgeMatrix_crossprod (may need to do this in other places).          dgeMatrix_crossprod (may need to do this in other places).
92          * R/AllGeneric.R,dsCMatrix.R, src/dscMatrix.[ch]: Add Cholesky          * R/AllGeneric.R,dsCMatrix.R, src/dscMatrix.[ch]: Add Cholesky

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