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revision 1244, Wed Apr 12 12:28:04 2006 UTC revision 1507, Mon Sep 4 18:41:34 2006 UTC
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1    2006-09-04  Douglas Bates  <bates@R-project.org>
2    
3            * src/dtCMatrix.c (dtCMatrix_validate): rename functions.
4            * src/DEPS.mkf: update
5    
6    2006-09-02  Martin Maechler  <maechler@stat.math.ethz.ch>
7    
8            * created branches/Matrix-for-R-2.3.x;  on trunk: do
9            * DESCRIPTION (Version): 0.9975-0
10            (Depends): R (>= 2.4.0)
11    
12    2006-09-01  Douglas Bates  <bates@R-project.org>
13    
14            * R/sparseMatrix.R: Added direct method to CsparseMatrix from graphNEL
15    
16    2006-09-01  Martin Maechler  <maechler@stat.math.ethz.ch>
17    
18            * R/sparseMatrix.R: add coercion from "ANY" to "sparseMatrix"
19            * R/denseMatrix.R:  add coercion from "ANY" to "denseMatrix"
20    
21            * R/Matrix.R ([): use nargs() to disambiguate M[i] and M[i,]
22    
23    2006-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
24    
25            * R/sparseMatrix.R (Arith): moved Arith group method one-level up
26            from "dsparse" to "sparse" and now go via "Csparse" instead of "dgC"
27            * R/dsparseMatrix.R: dito
28            * R/Csparse.R: dito
29    
30    2006-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
31    
32            * R/dMatrix.R (Compare): improve availability of "<", etc
33            * R/Auxiliaries.R (asTuniq): new; also make use of R 2.4.x print(*,max)
34    
35    2006-08-30  Martin Maechler  <maechler@stat.math.ethz.ch>
36    
37            * R/dgCMatrix.R: aargh: "Arith(<dgC>, numeric)" was wrong because
38            of a 0-index which was used as 1-index (..hmm)
39    
40            * R/sparseMatrix.R (prSpMatrix): fix printing an all-0 sparse Matrix
41    
42            * R/Auxiliaries.R (all0, is0): for 0-testing in presence of NA's
43            * R/Auxiliaries.R (isTriMat): use all0() for 0-testing.
44            (.is.diagonal): dito
45    
46            * R/lgTMatrix.R: as("matrix", "lgTMatrix"): warn about NA's
47    
48            * R/Matrix.R (Matrix): also work for NA data
49    
50    2006-08-28  Martin Maechler  <maechler@stat.math.ethz.ch>
51    
52            * R/Matrix.R (Matrix): + 'forceCheck' argument; dimnames setting
53            in all cases.
54    
55    2006-08-27  Douglas Bates  <bates@R-project.org>
56    
57            * src/dense.[ch],init.c, R/ddenseMatrix.R, man/band.Rd
58            (ddense_band): Added triu, tril and band for ddenseMatrix objects.
59    
60    2006-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
61    
62            * src/Mutils.c (dup_mMatrix_as_dgeMatrix): added all subclasses of
63            subclasses of "ddenseMatrix"
64            * src/init.c et al: outcomment dtrM*_as_dge* and dsyM*_as_dge*_
65            * R/ddenseMatrix.R et al: setAs("ddenseMatrix", "dgeMatrix", ..)
66            instead of half dozen specialized ones.
67    
68    2006-08-25  Douglas Bates  <bates@R-project.org>
69    
70            * R/lmer.R (qqmath method): Bug fix provided by Emmanuel Tillard
71            <tillard@cirad.fr> - ordering standard errors to match effects.
72    
73    2006-08-24  Douglas Bates  <bates@R-project.org>
74    
75            * src/lsCMatrix.c (lsCMatrix_trans): Remove lsCMatrix_chol based
76            on R_ldl.
77            * R/lCholCMatrix.R,
78            src/[dl]CholCMatrix.[ch],R_ldl.[ch],Metis_utils.[ch]: removed
79            * src/dsCMatrix.c (dsCMatrix_to_dgTMatrix): use CHOLMOD
80            * many files in ./R and ./src: Use more general version of
81            dup_mMatrix_as_dgeMatrix to simplify method definitions.
82            * src/Mutils.c (dup_mMatrix_as_dgeMatrix): Add ddiMatrix,
83            dtpMatrix, dspMatrix and dppMatrix conversions.
84    
85    
86    2006-08-23  Douglas Bates  <bates@R-project.org>
87    
88            * R/AllClass.R,lCholCMatrix.R,src/SOURCES_C.mkf,init.c,NAMESPACE:
89            Remove classes lCholCMatrix and dCholCMatrix based on R_ldl code.
90            * src/dgeMatrix.c: Ensure 'factors' slot exists in result of
91            dgeMatrix_crossprod (may need to do this in other places).
92            * R/AllGeneric.R,dsCMatrix.R, src/dscMatrix.[ch]: Add Cholesky
93            generic and method for dsCMatrix.  Use CHOLMOD for chol().
94    
95    2006-08-22  Douglas Bates  <bates@R-project.org>
96    
97            * src/Mutils.c (dup_mMatrix_as_dgeMatrix): updated for general
98            types of classed Matrices, matrices or numeric or logical vectors.
99            * src/init.c: register dup_mMatrix_as_dgeMatrix for coercions.
100            * src/chm_common.c,Mutils.h (as_cholmod_factor): Move check_class
101            to Mutils.h (as an inline) and change name to Matrix_check_class;
102            fixes in as_cholmod_factor and chm_factor_to_SEXP.
103            * src/dsCMatrix.[ch]: Use CHOLMOD for dsCMatrix_chol and
104            dsCMatrix_matrix_solve.  Comment out vestigial functions.
105            * src/Csparse.c: use diag_P and uplo_P macros.
106    
107    2006-08-21  Douglas Bates  <bates@R-project.org>
108    
109            * src/lmer.c (internal_mer_RZXinv): Fix memory leak caught by
110            valgrind.
111            * tests/matprod.R: Add tests to verify that 'solve' and '%*%' are
112            inverses.
113            * src/sparseQR.c (sparseQR_validate): add new validation test, fix
114            -Wall warnings.
115            * src/dppMatrix.c,dtrMatrix.c,dgCMatrix.c,dgeMatrix.c,dspMatrix.c:
116            Use dup_mMatrix_as_dgeMatrix.
117    
118    2006-08-20  Douglas Bates  <bates@R-project.org>
119    
120            * src/sparseQR.c: Fix thinko in sparseQR_resid_fitted.
121            * tests/sparseQR.R: Added
122            * man/sparseQR-class.Rd: Document methods for qr.* generics
123            * R/sparseQR.R: Return correct # of coefs; fix cut-and-paste errors
124    
125    2006-08-19  Douglas Bates  <bates@R-project.org>
126    
127            * NAMESPACE, R/sparseQR.R, src/init.c,sparseQR.[ch],SOURCES_C.mkf:
128            Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid
129            and qr.fitted.
130            * src/Mutils.[ch]: Added dup_mMatrix_as_dgeMatrix utility
131            * src/dgCMatrix.c: Check for ordering before storing q in dgCMatrix_QR
132    
133    2006-08-18  Martin Maechler  <maechler@stat.math.ethz.ch>
134    
135            * R/AllGeneric.R: add "qr" and "chol" generics; via 'trick' since
136            the base version has no "..." argument.
137    
138            * R/sparseMatrix.R (prSpMatrix): fix the triangular unit diagonal case.
139    
140            * R/Matrix.R: define and
141            * NAMESPACE: export as.numeric() and as.logical() methods.
142                    Let's hope these do not badly slow down something...
143            Finally export the zapsmall() method.
144    
145    2006-08-17  Douglas Bates  <bates@R-project.org>
146    
147            * src/dgCMatrix.[ch] (dgCMatrix_matrix_solve), src/init.c,
148            R/dgCMatrix.R: solve methods for dgCMatrix and dense RHS.
149            * src/dtCMatrix.c :Remove code that is no longer used
150            * R/dtCMatrix.R: Use C code for diagU2N in CsparseMatrix classes
151    
152    2006-08-14  Douglas Bates  <bates@R-project.org>
153    
154            * src/Csparse.[ch],init.c (Csparse_to_logical): Added utilities
155            Csparse_to_logical and Csparse_symmetric_to_general.
156            * R/dgCMatrix.R,dsCMatrix.R,Csparse.R : Consolidate general
157            coercion methods between CsparseMatrix and TsparseMatrix.
158    
159    2006-08-14  Douglas Bates  <bates@R-project.org>
160    
161            * R/dtCMatrix.R,dgCMatrix.R,Csparse.R src/init.c,dgCMatrix.[ch],
162            Csparse.[ch],chm_common.c,dense.c : Use CHOLMOD code and methods
163            for CsparseMatrix, TsparseMatrix, denseMatrix or matrix when
164            possible.
165    
166    2006-08-12  Douglas Bates  <bates@R-project.org>
167    
168            * src/chm_common.[ch],Csparse.[ch],Tsparse.[ch],CHMfactor.c,dtTMatrix.c,
169              dgTMatrix.c,dgCMatrix.c,dsCMatrix.c,dtTMatrix.c, R/dsTMatrix.R,
170              Tsparse.R,Csparse.R,dgTMatrix.R,dsCMatrix.R,lsCMatrix.R:
171              generalize conversions between TsparseMatrix, CsparseMatrix,
172              denseMatrix and matrix.  Preserve triangularity property and
173              propagate Dimnames in the easy cases.
174    
175    2006-08-10  Douglas Bates  <bates@R-project.org>
176    
177            * src/lmer.c: adjust checks in glmer_init for S4SXP
178            * tests/validObj.R: check of all(eq) should be all(eq@x) - worked
179            before S4SXP but for the wrong reasons.
180    
181    2006-08-08  Douglas Bates  <bates@R-project.org>
182    
183            * src/Csparse.c (Csparse_crossprod): tcrossprod result has stype = -1.
184            Later modified to return the upper triangle only.
185            * R/dgTMatrix.R: Remove vestigial crossprod and tcrossprod methods.
186    
187    2006-08-07  Douglas Bates  <bates@R-project.org>
188    
189            * src/Csparse.c (Csparse_crossprod): Set stype on result to avoid
190            R-level conversion to a sparse symmetric class.
191            * R/Tsparse.R,R/Csparse.R (crossprod and tcrossprod methods):
192            Remove conversion to sparse symmetric classes (now done in C code).
193    
194    2006-08-07  Martin Maechler  <maechler@stat.math.ethz.ch>
195    
196            * R/dgCMatrix.R: disable old crossprod and tcrossprod methods
197            * man/band.Rd:  adapt the \dontshow{} unit test.
198    
199    2006-08-07  Martin Maechler  <maechler@stat.math.ethz.ch>
200    
201            * DESCRIPTION (Version): 0.995-14  for CRAN
202    
203            * tests/other-pkgs.R: oops: library(Matrix) outside *if* !
204    
205            * R/sparseMatrix.R (Tsp2grNEL): fixed Tsparse -> graph coercion
206            * tests/other-pkgs.R:  more checks, sparseMatrix -> graph
207    
208            * R/Auxiliaries.R (as_Tsparse, as_Rsparse): new
209            * R/Tsparse.R (tril, triu, band): methods
210            * R/dgRMatrix.R (tril, ...):    ditto
211            * man/band.Rd:                  ditto
212    
213    2006-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
214    
215            * R/Matrix.R (head, tail): directly use utils:::head.matrix
216                    to be up-to-date automatically.
217    
218    2006-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
219    
220            * DESCRIPTION (Version): 0.995-13 to be released to CRAN
221    
222            * DESCRIPTION (Lazydata): no, instead of 'yes' because it fails for:
223            * data/CAex.R, inst/external/CAex_slots.rda: replacing data/CAex.rda
224            * data/KNex.R, inst/external/KNex_slots.rda: replacing data/KNex.rda
225            such that the S4 objects are always created by the current version
226            of R and 'Matrix' class definitions.
227    
228    2006-08-01  Douglas Bates  <bates@R-project.org>
229    
230            * R/lmer.R (LMEoptimize method), tests/lmer.R,
231            inst/external/test3comp.rda: Added warnings for convergence on
232            boundary and test cases.
233    
234            * src/lmer.c (mer_postVar): Modified to return the variances that
235            are marginal to the fixed effects, not conditional on them (which
236            is what the bVar slot contents represent).
237    
238    2006-07-31  Douglas Bates  <bates@R-project.org>
239    
240            * NAMESPACE, src/lmer.c, R/lmer.R (hatTrace):  Add the hatTrace
241            function which calls the C function mer_hat_trace2.
242    
243            * man/ranef.Rd: Include description of "postVar" argument and
244            producing a caterpillar plot.
245    
246    2006-07-31  Martin Maechler  <maechler@stat.math.ethz.ch>
247    
248            * NAMESPACE:    change  "correlation" to "corMatrix"
249            * R/AllClass.R: to avoid clash with S3 class in 'nlme'.
250            * R/dpoMatrix.R: ditto
251            * R/lmer.R:      ditto
252    
253    2006-07-28  Douglas Bates  <bates@R-project.org>
254    
255            * src/lmer.c (internal_mer_RZXinv): Split the calculation of the
256            RZXinv slot's contents into a separate internal function that can
257            be used in mer_hat_trace.
258    
259    2006-07-22  Martin Maechler  <maechler@stat.math.ethz.ch>
260    
261            * R/Matrix.R: Coercions "Matrix" -> (sparse|dense)Matrix
262            via new smart
263            * R/Auxiliaries.R (as_Csparse, as_dense, .M.shapse): new
264            utility functions.
265    
266    
267    2006-07-21  Martin Maechler  <maechler@stat.math.ethz.ch>
268    
269            * R/Csparse.R (tril, triu, band): do return *triangular* classed
270            matrices when appropriate; band() even symmetric ones.
271            (replCmat): extend to potentially all "CsparseMatrix"
272            * R/Tsparse.R (replTmat): extend to all "TsparseMatrix"; hence
273            allow subassignment for special sparse matrices.
274    
275            * R/Auxiliaries.R (as_geClass): factor out the  .M.kind() functionality
276    
277            * src/lmer.c (mer_MCMCsamp, glmer_MCMCsamp): new 'verbose'
278            argument; in glmer_*(): print only if(verbose).
279    
280            speed-optimize a few places by moving REAL(.) out of loops.
281    
282            * src/lmer.h, src/init.h, R/lmer.R:  related to above.
283    
284    2006-07-20  Martin Maechler  <maechler@stat.math.ethz.ch>
285    
286            * R/Matrix.R("["): disable ("Matrix", i = "logical", j = "missing"),
287                    since that wrongly triggers also for M[ logi , ]
288    
289            * R/denseMatrix.R: "[" methods now also work e.g. when indexing
290            a symmetric matrix that results in a non-symmetric one.
291            * R/Auxiliaries.R (as_geClass): new function used in "[" above.
292    
293            * R/dMatrix.R: make round(M) work as round(M, 0)
294    
295            * R/dgTMatrix.R (image): coordinate system and axis now use
296            1-based indices, not 0-based ones.
297    
298            * R/Tsparse.R (.ind.prep for "["): get rid of max(<empty>) warning.
299            * tests/indexing.R: test it.
300    
301            * NAMESPACE: export isSymmetric(); has been a generic in "base" for a while;
302            * man/isSymmetric-methods.Rd: and document it.
303    
304            * R/SparseM-conv.R: added coercion methods for some 'SparseM' matrices.
305            * man/SparseM-conv.Rd: docu them
306    
307            * tests/other-pkgs.R: renamed from tests/graph.R and add example
308                    for 'SparseM' conversions
309    
310    2006-07-17  Douglas Bates  <Douglas.Bates@R-project.org>
311    
312            * R/Matrix.R (head): added head() and tail() methods.
313    
314    2006-07-17  Martin Maechler  <maechler@stat.math.ethz.ch>
315    
316            * DESCRIPTION (Version): 0.995-12 released to CRAN
317    
318    2006-07-15  Martin Maechler  <maechler@stat.math.ethz.ch>
319    
320            * tests/simple.R: add check for correct dsT -> dgT coercion;
321                    add check for correct printing of symmetric sparse matrices.
322    
323            * R/Auxiliaries.R (non0ind): return *all* non-0 entry indices also
324            for sparse symmetric matrices.
325    
326            * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): do not copy the
327            diagonal twice.
328    
329    2006-07-11  Douglas Bates  <Douglas.Bates@R-project.org>
330    
331            * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): Fix a case of INTEGER
332            being applied to the x slot (detected by Brian Ripley).
333    
334    2006-07-10  Martin Maechler  <maechler@stat.math.ethz.ch>
335    
336            * src/dgCMatrix.c (dgCMatrix_validate): 'p' slot must have correct length.
337    
338            * R/Auxiliaries.R (isTriC): fix buglet (we were 1-based!)
339    
340    2006-07-08  Martin Maechler  <maechler@stat.math.ethz.ch>
341    
342            * src/lgCMatrix.c (lgCMatrix_diag): new function
343            * R/lgCMatrix.R (diag): for new method
344    
345            * R/AllClass.R (TsparseMatrix): do use Tsparse_validate
346                 ==> construction of illegal "*gTMatrix" via new() should
347                 now be much less easy:
348            * tests/Class+Meth.R: assertError() for some illegal "dgT*"
349    
350            * R/Matrix.R (Matrix): Matrix(0, nrow,ncol) now "goes sparse"
351                    directly.
352            * man/Matrix.Rd: documents it.
353    
354    2006-07-06  Douglas Bates  <bates@R-project.org>
355    
356            * src/pedigree.c (pedigree_inbreeding): Correction in
357            initialization.  This function is not currently being used and is
358            not fully tested.
359    
360            * NAMESPACE, R/{AllClass.R,lmer.R}, src/{init.c,lmer.c}:
361            Introduced the glmer class.  Added code for mcmcmsamp on glmer
362            objects.  Modified validity check on pedigree objects to account
363            for nonparallel patterns of missingness of parents.
364    
365            * man/{lmer-class.Rd,mcmcsamp.Rd}: Update documentation for glmer
366            class.
367    
368    2006-07-01  Martin Maechler  <maechler@stat.math.ethz.ch>
369    
370            * R/pMatrix.R: coercion pMatrix -> Tsparse
371    
372    2006-06-12  Douglas Bates  <bates@R-project.org>
373    
374            * DESCRIPTION (Version): 0.995-11 released to CRAN
375    
376            * R/lmer.R (mcmcsamp method): Corrected arrangments of names on
377            the output from mcmcsamp.
378    
379    2006-06-10  Douglas Bates  <bates@R-project.org>
380    
381            * R/lmer.R (simulestimate): added C code for calculating the trace
382            of the hat matrix.
383    
384    2006-06-09  Martin Maechler  <maechler@stat.math.ethz.ch>
385    
386            * R/diagMatrix.R (setAs): define coercion methods to sparse matrix
387            classes.
388            * R/sparseMatrix.R etc: multiplication of diagonal and sparse
389    
390    2006-06-08  Martin Maechler  <maechler@stat.math.ethz.ch>
391    
392            * R/dgTMatrix.R (colSums): etc. All four of
393            colSums(), rowSums(), colMeans(), rowMeans() now should work for
394            all "Matrices".
395    
396    2006-06-01  Douglas Bates  <bates@stat.wisc.edu>
397    
398            * R/lmer.R (panel.ci): Add a reference line at zero and a
399            background grid to the qqmath plot of ranef.lmer.
400    
401    2006-05-30  Douglas Bates  <bates@stat.wisc.edu>
402    
403            * R/lmer.R (expandSlash): Functions (non-exported) to allow nested
404            grouping factors to be specified in the formula as (1|foo/bar).
405    
406    2006-05-27  Douglas Bates  <bates@stat.wisc.edu>
407    
408            * R/lmer.R (findbars and others): Change check of is.numeric to
409            !is.language to resolve the bug reported by Jacob Wegelin.
410    
411            * src/pedigree.c (pedigree_inbreeding): Initial implementation of
412            code to evaluate inbreeding coefficients without calculating T,
413            based on code in Sargolzaei and Iwaisaki's paper.
414    
415    2006-05-27  Douglas Bates  <bates@stat.wisc.edu>
416    
417            * R/{lmer.R,AllGeneric.R}, src/{init.c,lmer.[ch]}: Added local
418            generic and mer methods for isNested and denomDF. This denomDF was
419            an attempt to emulate that in lme but I don't think that makes
420            sense.  Use the trace of the hat matrix instead.
421    
422    2006-05-17  Martin Maechler  <maechler@stat.math.ethz.ch>
423    
424            * R/sparseMatrix.R: Matrix <-> graph methods: can no longer use
425            the C code depending on a slot structure that's no longer valid.
426            * src/dgTMatrix.c: ditto (also: src/init.c src/dgTMatrix.h)
427    
428    
429    2006-05-17  Douglas Bates  <bates@stat.wisc.edu>
430    
431            *  R/{AllGeneric.R,Csparse.R},man/band.Rd,NAMESPACE: changed name
432            of lowerTriMatrix generic and methods to tril (also upper to triu)
433            and added a general band extractor.
434    
435    2006-05-16  Douglas Bates  <bates@stat.wisc.edu>
436    
437            * R/pedigree.R (pedigree): Replace sire and dam values outside the
438            allowable range with NAs. Added a corresponding check in the
439            validity check for the pedigree class.
440    
441            * R/[CT]sparse.R ([t]crossprod): The result of single-argument
442            crossprod methods now inherits from symmetricMatrix.
443    
444    2006-05-15  Douglas Bates  <bates@stat.wisc.edu>
445    
446            * R/AllGeneric.R (lowerTriMatrix): Added (but did not export)
447            generics lowerTriMatrix and upperTriMatrix along with methods for
448            the Csparse virtual class.  Also added a C function Csparse_band
449            that implements these methods by calling cholmod_band.
450    
451    2006-05-15  Martin Maechler  <maechler@stat.math.ethz.ch>
452    
453            * R/Tsparse.R ("["): column or row subsetting; @Dimnames[k] got
454            erased when it was NULL.  This led to invalid subselections!
455    
456    2006-04-25  Douglas Bates  <bates@stat.wisc.edu>
457    
458            * R/dtCMatrix.R: avoid coercion of dtCMatrix object to dgCMatrix
459            in method for "t" so as not to lose the unit diagonal property.
460    
461    2006-04-19  Douglas Bates  <bates@stat.wisc.edu>
462    
463            * R/lmer.R, R/AllGeneric.R, NAMESPACE: Remove the postVar generic
464            and methods.  This is now an option to the ranef method for the
465            mer class.
466    
467            * src/cs_utils.c: Ensure that the nz component is -1 for a
468            compressed column-oriented matrix.  Minor formatting cleanup.
469    
470            * man/lmer-class.Rd: Document the qqmath method for ranef.lmer
471            objects.
472    
473    2006-04-19  Martin Maechler  <maechler@stat.math.ethz.ch>
474    
475            * R/Auxiliaries.R (diagU2N): new for the solve() methods in
476            * R/dtCMatrix.R: where dgC -> dgT coercion now preserves diag = "U".
477    
478    2006-04-15  Douglas Bates  <bates@stat.wisc.edu>
479    
480            * src/cs.[ch],src/cs_utils.[ch] : Added Tim Davis' CSparse library
481            in cs.[ch] and utilities to interface to that code in cs_utils.[ch].
482    
483            * R/dtCMatrix.R, src/dtCMatrix.[ch] : CSparse-based solve methods
484            for the dtCMatrix class.
485    
486    2006-04-12  Douglas Bates  <bates@stat.wisc.edu>
487    
488            * R/pedigree.R, R/AllClass.R, NAMESPACE: added a pedigree class
489            and methods for it.
490    
491    2006-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
492    
493            * R/dgCMatrix.R: add  storage.mode(.) <- "double" for "matrix"
494            arguments, such that M %*% 1:6 now works
495            * Tests/matprod.R: test the above
496    
497  2006-04-03  Douglas Bates  <bates@stat.wisc.edu>  2006-04-03  Douglas Bates  <bates@stat.wisc.edu>
498    
499          * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for          * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
# Line 50  Line 546 
546          * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)          * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
547          * man/KNex.Rd: and other help files          * man/KNex.Rd: and other help files
548          * tests/*.R: several ones needed adaption          * tests/*.R: several ones needed adaption
549          * inst/doc/Comparisons.Rnw: dito          * inst/doc/Comparisons.Rnw: ditto
550    
551  2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>  2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
552    
# Line 254  Line 750 
750  2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>  2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
751    
752          * R/Matrix.R:  added first "[<-" methods; not yet functional          * R/Matrix.R:  added first "[<-" methods; not yet functional
753          * R/denseMatrix.R: dito          * R/denseMatrix.R: ditto
754          * man/Subassign-methods.Rd: new help file for these          * man/Subassign-methods.Rd: new help file for these
755    
756  2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>  2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>

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