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Diff of /pkg/ChangeLog

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revision 1405, Mon Aug 21 14:43:00 2006 UTC revision 1453, Sun Aug 27 16:16:35 2006 UTC
# Line 1  Line 1 
1    2006-08-27  Douglas Bates  <bates@R-project.org>
2    
3            * src/dense.[ch],init.c, R/ddenseMatrix.R, man/band.Rd
4            (ddense_band): Added triu, tril and band for ddenseMatrix objects.
5    
6    2006-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
7    
8            * src/Mutils.c (dup_mMatrix_as_dgeMatrix): added all subclasses of
9            subclasses of "ddenseMatrix"
10            * src/init.c et al: outcomment dtrM*_as_dge* and dsyM*_as_dge*_
11            * R/ddenseMatrix.R et al: setAs("ddenseMatrix", "dgeMatrix", ..)
12            instead of half dozen specialized ones.
13    
14    2006-08-25  Douglas Bates  <bates@R-project.org>
15    
16            * R/lmer.R (qqmath method): Bug fix provided by Emmanuel Tillard
17            <tillard@cirad.fr> - ordering standard errors to match effects.
18    
19    2006-08-24  Douglas Bates  <bates@R-project.org>
20    
21            * src/lsCMatrix.c (lsCMatrix_trans): Remove lsCMatrix_chol based
22            on R_ldl.
23            * R/lCholCMatrix.R,
24            src/[dl]CholCMatrix.[ch],R_ldl.[ch],Metis_utils.[ch]: removed
25            * src/dsCMatrix.c (dsCMatrix_to_dgTMatrix): use CHOLMOD
26            * many files in ./R and ./src: Use more general version of
27            dup_mMatrix_as_dgeMatrix to simplify method definitions.
28            * src/Mutils.c (dup_mMatrix_as_dgeMatrix): Add ddiMatrix,
29            dtpMatrix, dspMatrix and dppMatrix conversions.
30    
31    
32    2006-08-23  Douglas Bates  <bates@R-project.org>
33    
34            * R/AllClass.R,lCholCMatrix.R,src/SOURCES_C.mkf,init.c,NAMESPACE:
35            Remove classes lCholCMatrix and dCholCMatrix based on R_ldl code.
36            * src/dgeMatrix.c: Ensure 'factors' slot exists in result of
37            dgeMatrix_crossprod (may need to do this in other places).
38            * R/AllGeneric.R,dsCMatrix.R, src/dscMatrix.[ch]: Add Cholesky
39            generic and method for dsCMatrix.  Use CHOLMOD for chol().
40    
41    2006-08-22  Douglas Bates  <bates@R-project.org>
42    
43            * src/Mutils.c (dup_mMatrix_as_dgeMatrix): updated for general
44            types of classed Matrices, matrices or numeric or logical vectors.
45            * src/init.c: register dup_mMatrix_as_dgeMatrix for coercions.
46            * src/chm_common.c,Mutils.h (as_cholmod_factor): Move check_class
47            to Mutils.h (as an inline) and change name to Matrix_check_class;
48            fixes in as_cholmod_factor and chm_factor_to_SEXP.
49            * src/dsCMatrix.[ch]: Use CHOLMOD for dsCMatrix_chol and
50            dsCMatrix_matrix_solve.  Comment out vestigial functions.
51            * src/Csparse.c: use diag_P and uplo_P macros.
52    
53  2006-08-21  Douglas Bates  <bates@R-project.org>  2006-08-21  Douglas Bates  <bates@R-project.org>
54    
55          * src/lmer.c (internal_mer_RZXinv): Fix memory leak caught by          * src/lmer.c (internal_mer_RZXinv): Fix memory leak caught by
56          valgrind.          valgrind.
57            * tests/matprod.R: Add tests to verify that 'solve' and '%*%' are
58            inverses.
59            * src/sparseQR.c (sparseQR_validate): add new validation test, fix
60            -Wall warnings.
61            * src/dppMatrix.c,dtrMatrix.c,dgCMatrix.c,dgeMatrix.c,dspMatrix.c:
62            Use dup_mMatrix_as_dgeMatrix.
63    
64  2006-08-20  Douglas Bates  <bates@R-project.org>  2006-08-20  Douglas Bates  <bates@R-project.org>
65    

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