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Diff of /pkg/ChangeLog

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revision 1405, Mon Aug 21 14:43:00 2006 UTC revision 1445, Fri Aug 25 14:54:54 2006 UTC
# Line 1  Line 1 
1    2006-08-25  Douglas Bates  <bates@R-project.org>
2    
3            * R/lmer.R (qqmath method): Bug fix provided by Emmanuel Tillard
4            <tillard@cirad.fr> - ordering standard errors to match effects.
5    
6    2006-08-24  Douglas Bates  <bates@R-project.org>
7    
8            * src/lsCMatrix.c (lsCMatrix_trans): Remove lsCMatrix_chol based
9            on R_ldl.
10            * R/lCholCMatrix.R,
11            src/[dl]CholCMatrix.[ch],R_ldl.[ch],Metis_utils.[ch]: removed
12            * src/dsCMatrix.c (dsCMatrix_to_dgTMatrix): use CHOLMOD
13            * many files in ./R and ./src: Use more general version of
14            dup_mMatrix_as_dgeMatrix to simplify method definitions.
15            * src/Mutils.c (dup_mMatrix_as_dgeMatrix): Add ddiMatrix,
16            dtpMatrix, dspMatrix and dppMatrix conversions.
17    
18    
19    2006-08-23  Douglas Bates  <bates@R-project.org>
20    
21            * R/AllClass.R,lCholCMatrix.R,src/SOURCES_C.mkf,init.c,NAMESPACE:
22            Remove classes lCholCMatrix and dCholCMatrix based on R_ldl code.
23            * src/dgeMatrix.c: Ensure 'factors' slot exists in result of
24            dgeMatrix_crossprod (may need to do this in other places).
25            * R/AllGeneric.R,dsCMatrix.R, src/dscMatrix.[ch]: Add Cholesky
26            generic and method for dsCMatrix.  Use CHOLMOD for chol().
27    
28    2006-08-22  Douglas Bates  <bates@R-project.org>
29    
30            * src/Mutils.c (dup_mMatrix_as_dgeMatrix): updated for general
31            types of classed Matrices, matrices or numeric or logical vectors.
32            * src/init.c: register dup_mMatrix_as_dgeMatrix for coercions.
33            * src/chm_common.c,Mutils.h (as_cholmod_factor): Move check_class
34            to Mutils.h (as an inline) and change name to Matrix_check_class;
35            fixes in as_cholmod_factor and chm_factor_to_SEXP.
36            * src/dsCMatrix.[ch]: Use CHOLMOD for dsCMatrix_chol and
37            dsCMatrix_matrix_solve.  Comment out vestigial functions.
38            * src/Csparse.c: use diag_P and uplo_P macros.
39    
40  2006-08-21  Douglas Bates  <bates@R-project.org>  2006-08-21  Douglas Bates  <bates@R-project.org>
41    
42          * src/lmer.c (internal_mer_RZXinv): Fix memory leak caught by          * src/lmer.c (internal_mer_RZXinv): Fix memory leak caught by
43          valgrind.          valgrind.
44            * tests/matprod.R: Add tests to verify that 'solve' and '%*%' are
45            inverses.
46            * src/sparseQR.c (sparseQR_validate): add new validation test, fix
47            -Wall warnings.
48            * src/dppMatrix.c,dtrMatrix.c,dgCMatrix.c,dgeMatrix.c,dspMatrix.c:
49            Use dup_mMatrix_as_dgeMatrix.
50    
51  2006-08-20  Douglas Bates  <bates@R-project.org>  2006-08-20  Douglas Bates  <bates@R-project.org>
52    

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