SCM

SCM Repository

[matrix] Diff of /pkg/ChangeLog
ViewVC logotype

Diff of /pkg/ChangeLog

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 1312, Thu Jul 6 15:29:56 2006 UTC revision 1351, Mon Aug 7 16:51:14 2006 UTC
# Line 1  Line 1 
1    2006-08-07  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/dgCMatrix.R: disable old crossprod and tcrossprod methods
4            * man/band.Rd:  adapt the \dontshow{} unit test.
5    
6    2006-08-07  Martin Maechler  <maechler@stat.math.ethz.ch>
7    
8            * DESCRIPTION (Version): 0.995-14  for CRAN
9    
10            * tests/other-pkgs.R: oops: library(Matrix) outside *if* !
11    
12            * R/sparseMatrix.R (Tsp2grNEL): fixed Tsparse -> graph coercion
13            * tests/other-pkgs.R:  more checks, sparseMatrix -> graph
14    
15            * R/Auxiliaries.R (as_Tsparse, as_Rsparse): new
16            * R/Tsparse.R (tril, triu, band): methods
17            * R/dgRMatrix.R (tril, ...):    dito
18            * man/band.Rd:                  dito
19    
20    2006-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
21    
22            * R/Matrix.R (head, tail): directly use utils:::head.matrix
23                    to be up-to-date automatically.
24    
25    2006-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
26    
27            * DESCRIPTION (Version): 0.995-13 to be released to CRAN
28    
29            * DESCRIPTION (Lazydata): no, instead of 'yes' because it fails for:
30            * data/CAex.R, inst/external/CAex_slots.rda: replacing data/CAex.rda
31            * data/KNex.R, inst/external/KNex_slots.rda: replacing data/KNex.rda
32            such that the S4 objects are always created by the current version
33            of R and 'Matrix' class definitions.
34    
35    2006-08-01  Douglas Bates  <bates@R-project.org>
36    
37            * R/lmer.R (LMEoptimize method), tests/lmer.R,
38            inst/external/test3comp.rda: Added warnings for convergence on
39            boundary and test cases.
40    
41            * src/lmer.c (mer_postVar): Modified to return the variances that
42            are marginal to the fixed effects, not conditional on them (which
43            is what the bVar slot contents represent).
44    
45    2006-07-31  Douglas Bates  <bates@R-project.org>
46    
47            * NAMESPACE, src/lmer.c, R/lmer.R (hatTrace):  Add the hatTrace
48            function which calls the C function mer_hat_trace2.
49    
50            * man/ranef.Rd: Include description of "postVar" argument and
51            producing a caterpillar plot.
52    
53    2006-07-31  Martin Maechler  <maechler@stat.math.ethz.ch>
54    
55            * NAMESPACE:    change  "correlation" to "corMatrix"
56            * R/AllClass.R: to avoid clash with S3 class in 'nlme'.
57            * R/dpoMatrix.R: dito
58            * R/lmer.R:      dito
59    
60    2006-07-28  Douglas Bates  <bates@R-project.org>
61    
62            * src/lmer.c (internal_mer_RZXinv): Split the calculation of the
63            RZXinv slot's contents into a separate internal function that can
64            be used in mer_hat_trace.
65    
66    2006-07-22  Martin Maechler  <maechler@stat.math.ethz.ch>
67    
68            * R/Matrix.R: Coercions "Matrix" -> (sparse|dense)Matrix
69            via new smart
70            * R/Auxiliaries.R (as_Csparse, as_dense, .M.shapse): new
71            utility functions.
72    
73    
74    2006-07-21  Martin Maechler  <maechler@stat.math.ethz.ch>
75    
76            * R/Csparse.R (tril, triu, band): do return *triangular* classed
77            matrices when appropriate; band() even symmetric ones.
78            (replCmat): extend to potentially all "CsparseMatrix"
79            * R/Tsparse.R (replTmat): extend to all "TsparseMatrix"; hence
80            allow subassignment for special sparse matrices.
81    
82            * R/Auxiliaries.R (as_geClass): factor out the  .M.kind() functionality
83    
84            * src/lmer.c (mer_MCMCsamp, glmer_MCMCsamp): new 'verbose'
85            argument; in glmer_*(): print only if(verbose).
86    
87            speed-optimize a few places by moving REAL(.) out of loops.
88    
89            * src/lmer.h, src/init.h, R/lmer.R:  related to above.
90    
91    2006-07-20  Martin Maechler  <maechler@stat.math.ethz.ch>
92    
93            * R/Matrix.R("["): disable ("Matrix", i = "logical", j = "missing"),
94                    since that wrongly triggers also for M[ logi , ]
95    
96            * R/denseMatrix.R: "[" methods now also work e.g. when indexing
97            a symmetric matrix that results in a non-symmetric one.
98            * R/Auxiliaries.R (as_geClass): new function used in "[" above.
99    
100            * R/dMatrix.R: make round(M) work as round(M, 0)
101    
102            * R/dgTMatrix.R (image): coordinate system and axis now use
103            1-based indices, not 0-based ones.
104    
105            * R/Tsparse.R (.ind.prep for "["): get rid of max(<empty>) warning.
106            * tests/indexing.R: test it.
107    
108            * NAMESPACE: export isSymmetric(); has been a generic in "base" for a while;
109            * man/isSymmetric-methods.Rd: and document it.
110    
111            * R/SparseM-conv.R: added coercion methods for some 'SparseM' matrices.
112            * man/SparseM-conv.Rd: docu them
113    
114            * tests/other-pkgs.R: renamed from tests/graph.R and add example
115                    for 'SparseM' conversions
116    
117    2006-07-17  Douglas Bates  <Douglas.Bates@R-project.org>
118    
119            * R/Matrix.R (head): added head() and tail() methods.
120    
121    2006-07-17  Martin Maechler  <maechler@stat.math.ethz.ch>
122    
123            * DESCRIPTION (Version): 0.995-12 released to CRAN
124    
125    2006-07-15  Martin Maechler  <maechler@stat.math.ethz.ch>
126    
127            * tests/simple.R: add check for correct dsT -> dgT coercion;
128                    add check for correct printing of symmetric sparse matrices.
129    
130            * R/Auxiliaries.R (non0ind): return *all* non-0 entry indices also
131            for sparse symmetric matrices.
132    
133            * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): do not copy the
134            diagonal twice.
135    
136    2006-07-11  Douglas Bates  <Douglas.Bates@R-project.org>
137    
138            * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): Fix a case of INTEGER
139            being applied to the x slot (detected by Brian Ripley).
140    
141    2006-07-10  Martin Maechler  <maechler@stat.math.ethz.ch>
142    
143            * src/dgCMatrix.c (dgCMatrix_validate): 'p' slot must have correct length.
144    
145            * R/Auxiliaries.R (isTriC): fix buglet (we were 1-based!)
146    
147    2006-07-08  Martin Maechler  <maechler@stat.math.ethz.ch>
148    
149            * src/lgCMatrix.c (lgCMatrix_diag): new function
150            * R/lgCMatrix.R (diag): for new method
151    
152            * R/AllClass.R (TsparseMatrix): do use Tsparse_validate
153                 ==> construction of illegal "*gTMatrix" via new() should
154                 now be much less easy:
155            * tests/Class+Meth.R: assertError() for some illegal "dgT*"
156    
157            * R/Matrix.R (Matrix): Matrix(0, nrow,ncol) now "goes sparse"
158                    directly.
159            * man/Matrix.Rd: documents it.
160    
161  2006-07-06  Douglas Bates  <bates@R-project.org>  2006-07-06  Douglas Bates  <bates@R-project.org>
162    
163          * src/pedigree.c (pedigree_inbreeding): Correction in          * src/pedigree.c (pedigree_inbreeding): Correction in
# Line 9  Line 169 
169          objects.  Modified validity check on pedigree objects to account          objects.  Modified validity check on pedigree objects to account
170          for nonparallel patterns of missingness of parents.          for nonparallel patterns of missingness of parents.
171    
172            * man/{lmer-class.Rd,mcmcsamp.Rd}: Update documentation for glmer
173            class.
174    
175    2006-07-01  Martin Maechler  <maechler@stat.math.ethz.ch>
176    
177            * R/pMatrix.R: coercion pMatrix -> Tsparse
178    
179  2006-06-12  Douglas Bates  <bates@R-project.org>  2006-06-12  Douglas Bates  <bates@R-project.org>
180    
181            * DESCRIPTION (Version): 0.995-11 released to CRAN
182    
183          * R/lmer.R (mcmcsamp method): Corrected arrangments of names on          * R/lmer.R (mcmcsamp method): Corrected arrangments of names on
184          the output from mcmcsamp.          the output from mcmcsamp.
185    
# Line 23  Line 192 
192    
193          * R/diagMatrix.R (setAs): define coercion methods to sparse matrix          * R/diagMatrix.R (setAs): define coercion methods to sparse matrix
194          classes.          classes.
195            * R/sparseMatrix.R etc: multiplication of diagonal and sparse
196    
197  2006-06-08  Martin Maechler  <maechler@stat.math.ethz.ch>  2006-06-08  Martin Maechler  <maechler@stat.math.ethz.ch>
198    

Legend:
Removed from v.1312  
changed lines
  Added in v.1351

root@r-forge.r-project.org
ViewVC Help
Powered by ViewVC 1.0.0  
Thanks to:
Vienna University of Economics and Business Powered By FusionForge