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Diff of /pkg/ChangeLog

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revision 1312, Thu Jul 6 15:29:56 2006 UTC revision 1335, Mon Jul 31 12:11:35 2006 UTC
# Line 1  Line 1 
1    2006-07-31  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * NAMESPACE:    change  "correlation" to "corMatrix"
4            * R/AllClass.R: to avoid clash with S3 class in 'nlme'.
5            * R/dpoMatrix.R: dito
6            * R/lmer.R:      dito
7    
8    2006-07-22  Martin Maechler  <maechler@stat.math.ethz.ch>
9    
10            * R/Matrix.R: Coercions "Matrix" -> (sparse|dense)Matrix
11            via new smart
12            * R/Auxiliaries.R (as_Csparse, as_dense, .M.shapse): new
13            utility functions.
14    
15    
16    2006-07-21  Martin Maechler  <maechler@stat.math.ethz.ch>
17    
18            * R/Csparse.R (tril, triu, band): do return *triangular* classed
19            matrices when appropriate; band() even symmetric ones.
20            (replCmat): extend to potentially all "CsparseMatrix"
21            * R/Tsparse.R (replTmat): extend to all "TsparseMatrix"; hence
22            allow subassignment for special sparse matrices.
23    
24            * R/Auxiliaries.R (as_geClass): factor out the  .M.kind() functionality
25    
26            * src/lmer.c (mer_MCMCsamp, glmer_MCMCsamp): new 'verbose'
27            argument; in glmer_*(): print only if(verbose).
28    
29            speed-optimize a few places by moving REAL(.) out of loops.
30    
31            * src/lmer.h, src/init.h, R/lmer.R:  related to above.
32    
33    2006-07-20  Martin Maechler  <maechler@stat.math.ethz.ch>
34    
35            * R/Matrix.R("["): disable ("Matrix", i = "logical", j = "missing"),
36                    since that wrongly triggers also for M[ logi , ]
37    
38            * R/denseMatrix.R: "[" methods now also work e.g. when indexing
39            a symmetric matrix that results in a non-symmetric one.
40            * R/Auxiliaries.R (as_geClass): new function used in "[" above.
41    
42            * R/dMatrix.R: make round(M) work as round(M, 0)
43    
44            * R/dgTMatrix.R (image): coordinate system and axis now use
45            1-based indices, not 0-based ones.
46    
47            * R/Tsparse.R (.ind.prep for "["): get rid of max(<empty>) warning.
48            * tests/indexing.R: test it.
49    
50            * NAMESPACE: export isSymmetric(); has been a generic in "base" for a while;
51            * man/isSymmetric-methods.Rd: and document it.
52    
53            * R/SparseM-conv.R: added coercion methods for some 'SparseM' matrices.
54            * man/SparseM-conv.Rd: docu them
55    
56            * tests/other-pkgs.R: renamed from tests/graph.R and add example
57                    for 'SparseM' conversions
58    
59    2006-07-17  Douglas Bates  <Douglas.Bates@R-project.org>
60    
61            * R/Matrix.R (head): added head() and tail() methods.
62    
63    2006-07-17  Martin Maechler  <maechler@stat.math.ethz.ch>
64    
65            * DESCRIPTION (Version): 0.995-12 released to CRAN
66    
67    2006-07-15  Martin Maechler  <maechler@stat.math.ethz.ch>
68    
69            * tests/simple.R: add check for correct dsT -> dgT coercion;
70                    add check for correct printing of symmetric sparse matrices.
71    
72            * R/Auxiliaries.R (non0ind): return *all* non-0 entry indices also
73            for sparse symmetric matrices.
74    
75            * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): do not copy the
76            diagonal twice.
77    
78    2006-07-11  Douglas Bates  <Douglas.Bates@R-project.org>
79    
80            * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): Fix a case of INTEGER
81            being applied to the x slot (detected by Brian Ripley).
82    
83    2006-07-10  Martin Maechler  <maechler@stat.math.ethz.ch>
84    
85            * src/dgCMatrix.c (dgCMatrix_validate): 'p' slot must have correct length.
86    
87            * R/Auxiliaries.R (isTriC): fix buglet (we were 1-based!)
88    
89    2006-07-08  Martin Maechler  <maechler@stat.math.ethz.ch>
90    
91            * src/lgCMatrix.c (lgCMatrix_diag): new function
92            * R/lgCMatrix.R (diag): for new method
93    
94            * R/AllClass.R (TsparseMatrix): do use Tsparse_validate
95                 ==> construction of illegal "*gTMatrix" via new() should
96                 now be much less easy:
97            * tests/Class+Meth.R: assertError() for some illegal "dgT*"
98    
99            * R/Matrix.R (Matrix): Matrix(0, nrow,ncol) now "goes sparse"
100                    directly.
101            * man/Matrix.Rd: documents it.
102    
103  2006-07-06  Douglas Bates  <bates@R-project.org>  2006-07-06  Douglas Bates  <bates@R-project.org>
104    
105          * src/pedigree.c (pedigree_inbreeding): Correction in          * src/pedigree.c (pedigree_inbreeding): Correction in
# Line 9  Line 111 
111          objects.  Modified validity check on pedigree objects to account          objects.  Modified validity check on pedigree objects to account
112          for nonparallel patterns of missingness of parents.          for nonparallel patterns of missingness of parents.
113    
114            * man/{lmer-class.Rd,mcmcsamp.Rd}: Update documentation for glmer
115            class.
116    
117    2006-07-01  Martin Maechler  <maechler@stat.math.ethz.ch>
118    
119            * R/pMatrix.R: coercion pMatrix -> Tsparse
120    
121  2006-06-12  Douglas Bates  <bates@R-project.org>  2006-06-12  Douglas Bates  <bates@R-project.org>
122    
123            * DESCRIPTION (Version): 0.995-11 released to CRAN
124    
125          * R/lmer.R (mcmcsamp method): Corrected arrangments of names on          * R/lmer.R (mcmcsamp method): Corrected arrangments of names on
126          the output from mcmcsamp.          the output from mcmcsamp.
127    
# Line 23  Line 134 
134    
135          * R/diagMatrix.R (setAs): define coercion methods to sparse matrix          * R/diagMatrix.R (setAs): define coercion methods to sparse matrix
136          classes.          classes.
137            * R/sparseMatrix.R etc: multiplication of diagonal and sparse
138    
139  2006-06-08  Martin Maechler  <maechler@stat.math.ethz.ch>  2006-06-08  Martin Maechler  <maechler@stat.math.ethz.ch>
140    

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