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Diff of /pkg/ChangeLog

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revision 1312, Thu Jul 6 15:29:56 2006 UTC revision 1330, Fri Jul 21 08:28:18 2006 UTC
# Line 1  Line 1 
1    2006-07-21  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * src/lmer.c (mer_MCMCsamp, glmer_MCMCsamp): new 'verbose'
4            argument; in glmer_*(): print only if(verbose).
5    
6            speed-optimize a few places by moving REAL(.) out of loops.
7    
8            * src/lmer.h, src/init.h, R/lmer.R:  related to above.
9    
10    2006-07-20  Martin Maechler  <maechler@stat.math.ethz.ch>
11    
12            * R/Matrix.R("["): disable ("Matrix", i = "logical", j = "missing"),
13                    since that wrongly triggers also for M[ logi , ]
14    
15            * R/denseMatrix.R: "[" methods now also work e.g. when indexing
16            a symmetric matrix that results in a non-symmetric one.
17            * R/Auxiliaries.R (as_geClass): new function used in "[" above.
18    
19            * R/dMatrix.R: make round(M) work as round(M, 0)
20    
21            * R/dgTMatrix.R (image): coordinate system and axis now use
22            1-based indices, not 0-based ones.
23    
24            * R/Tsparse.R (.ind.prep for "["): get rid of max(<empty>) warning.
25            * tests/indexing.R: test it.
26    
27            * NAMESPACE: export isSymmetric(); has been a generic in "base" for a while;
28            * man/isSymmetric-methods.Rd: and document it.
29    
30            * R/SparseM-conv.R: added coercion methods for some 'SparseM' matrices.
31            * man/SparseM-conv.Rd: docu them
32    
33            * tests/other-pkgs.R: renamed from tests/graph.R and add example
34                    for 'SparseM' conversions
35    
36    2006-07-17  Douglas Bates  <Douglas.Bates@R-project.org>
37    
38            * R/Matrix.R (head): added head() and tail() methods.
39    
40    2006-07-17  Martin Maechler  <maechler@stat.math.ethz.ch>
41    
42            * DESCRIPTION (Version): 0.995-12 released to CRAN
43    
44    2006-07-15  Martin Maechler  <maechler@stat.math.ethz.ch>
45    
46            * tests/simple.R: add check for correct dsT -> dgT coercion;
47                    add check for correct printing of symmetric sparse matrices.
48    
49            * R/Auxiliaries.R (non0ind): return *all* non-0 entry indices also
50            for sparse symmetric matrices.
51    
52            * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): do not copy the
53            diagonal twice.
54    
55    2006-07-11  Douglas Bates  <Douglas.Bates@R-project.org>
56    
57            * src/dsTMatrix.c (dsTMatrix_as_dgTMatrix): Fix a case of INTEGER
58            being applied to the x slot (detected by Brian Ripley).
59    
60    2006-07-10  Martin Maechler  <maechler@stat.math.ethz.ch>
61    
62            * src/dgCMatrix.c (dgCMatrix_validate): 'p' slot must have correct length.
63    
64            * R/Auxiliaries.R (isTriC): fix buglet (we were 1-based!)
65    
66    2006-07-08  Martin Maechler  <maechler@stat.math.ethz.ch>
67    
68            * src/lgCMatrix.c (lgCMatrix_diag): new function
69            * R/lgCMatrix.R (diag): for new method
70    
71            * R/AllClass.R (TsparseMatrix): do use Tsparse_validate
72                 ==> construction of illegal "*gTMatrix" via new() should
73                 now be much less easy:
74            * tests/Class+Meth.R: assertError() for some illegal "dgT*"
75    
76            * R/Matrix.R (Matrix): Matrix(0, nrow,ncol) now "goes sparse"
77                    directly.
78            * man/Matrix.Rd: documents it.
79    
80  2006-07-06  Douglas Bates  <bates@R-project.org>  2006-07-06  Douglas Bates  <bates@R-project.org>
81    
82          * src/pedigree.c (pedigree_inbreeding): Correction in          * src/pedigree.c (pedigree_inbreeding): Correction in
# Line 9  Line 88 
88          objects.  Modified validity check on pedigree objects to account          objects.  Modified validity check on pedigree objects to account
89          for nonparallel patterns of missingness of parents.          for nonparallel patterns of missingness of parents.
90    
91            * man/{lmer-class.Rd,mcmcsamp.Rd}: Update documentation for glmer
92            class.
93    
94    2006-07-01  Martin Maechler  <maechler@stat.math.ethz.ch>
95    
96            * R/pMatrix.R: coercion pMatrix -> Tsparse
97    
98  2006-06-12  Douglas Bates  <bates@R-project.org>  2006-06-12  Douglas Bates  <bates@R-project.org>
99    
100            * DESCRIPTION (Version): 0.995-11 released to CRAN
101    
102          * R/lmer.R (mcmcsamp method): Corrected arrangments of names on          * R/lmer.R (mcmcsamp method): Corrected arrangments of names on
103          the output from mcmcsamp.          the output from mcmcsamp.
104    
# Line 23  Line 111 
111    
112          * R/diagMatrix.R (setAs): define coercion methods to sparse matrix          * R/diagMatrix.R (setAs): define coercion methods to sparse matrix
113          classes.          classes.
114            * R/sparseMatrix.R etc: multiplication of diagonal and sparse
115    
116  2006-06-08  Martin Maechler  <maechler@stat.math.ethz.ch>  2006-06-08  Martin Maechler  <maechler@stat.math.ethz.ch>
117    

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