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Diff of /pkg/ChangeLog

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revision 1271, Thu May 18 06:47:09 2006 UTC revision 1315, Mon Jul 10 16:08:05 2006 UTC
# Line 1  Line 1 
1    2006-07-10  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * src/dgCMatrix.c (dgCMatrix_validate): 'p' slot must have correct length.
4    
5            * R/Auxiliaries.R (isTriC): fix buglet (we were 1-based!)
6    
7    2006-07-08  Martin Maechler  <maechler@stat.math.ethz.ch>
8    
9            * src/lgCMatrix.c (lgCMatrix_diag): new function
10            * R/lgCMatrix.R (diag): for new method
11    
12            * R/AllClass.R (TsparseMatrix): do use Tsparse_validate
13                 ==> construction of illegal "*gTMatrix" via new() should
14                 now be much less easy:
15            * tests/Class+Meth.R: assertError() for some illegal "dgT*"
16    
17            * R/Matrix.R (Matrix): Matrix(0, nrow,ncol) now "goes sparse"
18                    directly.
19            * man/Matrix.Rd: documents it.
20    
21    2006-07-06  Douglas Bates  <bates@R-project.org>
22    
23            * src/pedigree.c (pedigree_inbreeding): Correction in
24            initialization.  This function is not currently being used and is
25            not fully tested.
26    
27            * NAMESPACE, R/{AllClass.R,lmer.R}, src/{init.c,lmer.c}:
28            Introduced the glmer class.  Added code for mcmcmsamp on glmer
29            objects.  Modified validity check on pedigree objects to account
30            for nonparallel patterns of missingness of parents.
31    
32            * man/{lmer-class.Rd,mcmcsamp.Rd}: Update documentation for glmer
33            class.
34    
35    2006-07-01  Martin Maechler  <maechler@stat.math.ethz.ch>
36    
37            * R/pMatrix.R: coercion pMatrix -> Tsparse
38    
39    2006-06-12  Douglas Bates  <bates@R-project.org>
40    
41            * R/lmer.R (mcmcsamp method): Corrected arrangments of names on
42            the output from mcmcsamp.
43    
44    2006-06-10  Douglas Bates  <bates@R-project.org>
45    
46            * R/lmer.R (simulestimate): added C code for calculating the trace
47            of the hat matrix.
48    
49    2006-06-09  Martin Maechler  <maechler@stat.math.ethz.ch>
50    
51            * R/diagMatrix.R (setAs): define coercion methods to sparse matrix
52            classes.
53            * R/sparseMatrix.R etc: multiplication of diagonal and sparse
54    
55    2006-06-08  Martin Maechler  <maechler@stat.math.ethz.ch>
56    
57            * R/dgTMatrix.R (colSums): etc. All four of
58            colSums(), rowSums(), colMeans(), rowMeans() now should work for
59            all "Matrices".
60    
61    2006-06-01  Douglas Bates  <bates@stat.wisc.edu>
62    
63            * R/lmer.R (panel.ci): Add a reference line at zero and a
64            background grid to the qqmath plot of ranef.lmer.
65    
66    2006-05-30  Douglas Bates  <bates@stat.wisc.edu>
67    
68            * R/lmer.R (expandSlash): Functions (non-exported) to allow nested
69            grouping factors to be specified in the formula as (1|foo/bar).
70    
71    2006-05-27  Douglas Bates  <bates@stat.wisc.edu>
72    
73            * R/lmer.R (findbars and others): Change check of is.numeric to
74            !is.language to resolve the bug reported by Jacob Wegelin.
75    
76            * src/pedigree.c (pedigree_inbreeding): Initial implementation of
77            code to evaluate inbreeding coefficients without calculating T,
78            based on code in Sargolzaei and Iwaisaki's paper.
79    
80    2006-05-27  Douglas Bates  <bates@stat.wisc.edu>
81    
82            * R/{lmer.R,AllGeneric.R}, src/{init.c,lmer.[ch]}: Added local
83            generic and mer methods for isNested and denomDF. This denomDF was
84            an attempt to emulate that in lme but I don't think that makes
85            sense.  Use the trace of the hat matrix instead.
86    
87  2006-05-17  Martin Maechler  <maechler@stat.math.ethz.ch>  2006-05-17  Martin Maechler  <maechler@stat.math.ethz.ch>
88    
89          * R/sparseMatrix.R: Matrix <-> graph methods: can no longer use          * R/sparseMatrix.R: Matrix <-> graph methods: can no longer use

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