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Diff of /pkg/ChangeLog

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revision 1271, Thu May 18 06:47:09 2006 UTC revision 1313, Thu Jul 6 17:24:01 2006 UTC
# Line 1  Line 1 
1    2006-07-06  Douglas Bates  <bates@R-project.org>
2    
3            * src/pedigree.c (pedigree_inbreeding): Correction in
4            initialization.  This function is not currently being used and is
5            not fully tested.
6    
7            * NAMESPACE, R/{AllClass.R,lmer.R}, src/{init.c,lmer.c}:
8            Introduced the glmer class.  Added code for mcmcmsamp on glmer
9            objects.  Modified validity check on pedigree objects to account
10            for nonparallel patterns of missingness of parents.
11    
12            * man/{lmer-class.Rd,mcmcsamp.Rd}: Update documentation for glmer
13            class.
14    
15    2006-06-12  Douglas Bates  <bates@R-project.org>
16    
17            * R/lmer.R (mcmcsamp method): Corrected arrangments of names on
18            the output from mcmcsamp.
19    
20    2006-06-10  Douglas Bates  <bates@R-project.org>
21    
22            * R/lmer.R (simulestimate): added C code for calculating the trace
23            of the hat matrix.
24    
25    2006-06-09  Martin Maechler  <maechler@stat.math.ethz.ch>
26    
27            * R/diagMatrix.R (setAs): define coercion methods to sparse matrix
28            classes.
29    
30    2006-06-08  Martin Maechler  <maechler@stat.math.ethz.ch>
31    
32            * R/dgTMatrix.R (colSums): etc. All four of
33            colSums(), rowSums(), colMeans(), rowMeans() now should work for
34            all "Matrices".
35    
36    2006-06-01  Douglas Bates  <bates@stat.wisc.edu>
37    
38            * R/lmer.R (panel.ci): Add a reference line at zero and a
39            background grid to the qqmath plot of ranef.lmer.
40    
41    2006-05-30  Douglas Bates  <bates@stat.wisc.edu>
42    
43            * R/lmer.R (expandSlash): Functions (non-exported) to allow nested
44            grouping factors to be specified in the formula as (1|foo/bar).
45    
46    2006-05-27  Douglas Bates  <bates@stat.wisc.edu>
47    
48            * R/lmer.R (findbars and others): Change check of is.numeric to
49            !is.language to resolve the bug reported by Jacob Wegelin.
50    
51            * src/pedigree.c (pedigree_inbreeding): Initial implementation of
52            code to evaluate inbreeding coefficients without calculating T,
53            based on code in Sargolzaei and Iwaisaki's paper.
54    
55    2006-05-27  Douglas Bates  <bates@stat.wisc.edu>
56    
57            * R/{lmer.R,AllGeneric.R}, src/{init.c,lmer.[ch]}: Added local
58            generic and mer methods for isNested and denomDF. This denomDF was
59            an attempt to emulate that in lme but I don't think that makes
60            sense.  Use the trace of the hat matrix instead.
61    
62  2006-05-17  Martin Maechler  <maechler@stat.math.ethz.ch>  2006-05-17  Martin Maechler  <maechler@stat.math.ethz.ch>
63    
64          * R/sparseMatrix.R: Matrix <-> graph methods: can no longer use          * R/sparseMatrix.R: Matrix <-> graph methods: can no longer use

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