SCM

SCM Repository

[matrix] Diff of /pkg/ChangeLog
ViewVC logotype

Diff of /pkg/ChangeLog

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 105, Sun Apr 18 22:12:10 2004 UTC revision 1271, Thu May 18 06:47:09 2006 UTC
# Line 1  Line 1 
1    2006-05-17  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/sparseMatrix.R: Matrix <-> graph methods: can no longer use
4            the C code depending on a slot structure that's no longer valid.
5            * src/dgTMatrix.c: dito (also: src/init.c src/dgTMatrix.h)
6    
7    
8    2006-05-17  Douglas Bates  <bates@stat.wisc.edu>
9    
10            *  R/{AllGeneric.R,Csparse.R},man/band.Rd,NAMESPACE: changed name
11            of lowerTriMatrix generic and methods to tril (also upper to triu)
12            and added a general band extractor.
13    
14    2006-05-16  Douglas Bates  <bates@stat.wisc.edu>
15    
16            * R/pedigree.R (pedigree): Replace sire and dam values outside the
17            allowable range with NAs. Added a corresponding check in the
18            validity check for the pedigree class.
19    
20            * R/[CT]sparse.R ([t]crossprod): The result of single-argument
21            crossprod methods now inherits from symmetricMatrix.
22    
23    2006-05-15  Douglas Bates  <bates@stat.wisc.edu>
24    
25            * R/AllGeneric.R (lowerTriMatrix): Added (but did not export)
26            generics lowerTriMatrix and upperTriMatrix along with methods for
27            the Csparse virtual class.  Also added a C function Csparse_band
28            that implements these methods by calling cholmod_band.
29    
30    2006-05-15  Martin Maechler  <maechler@stat.math.ethz.ch>
31    
32            * R/Tsparse.R ("["): column or row subsetting; @Dimnames[k] got
33            erased when it was NULL.  This led to invalid subselections!
34    
35    2006-04-25  Douglas Bates  <bates@stat.wisc.edu>
36    
37            * R/dtCMatrix.R: avoid coercion of dtCMatrix object to dgCMatrix
38            in method for "t" so as not to lose the unit diagonal property.
39    
40    2006-04-19  Douglas Bates  <bates@stat.wisc.edu>
41    
42            * R/lmer.R, R/AllGeneric.R, NAMESPACE: Remove the postVar generic
43            and methods.  This is now an option to the ranef method for the
44            mer class.
45    
46            * src/cs_utils.c: Ensure that the nz component is -1 for a
47            compressed column-oriented matrix.  Minor formatting cleanup.
48    
49            * man/lmer-class.Rd: Document the qqmath method for ranef.lmer
50            objects.
51    
52    2006-04-19  Martin Maechler  <maechler@stat.math.ethz.ch>
53    
54            * R/Auxiliaries.R (diagU2N): new for the solve() methods in
55            * R/dtCMatrix.R: where dgC -> dgT coercion now preserves diag = "U".
56    
57    2006-04-15  Douglas Bates  <bates@stat.wisc.edu>
58    
59            * src/cs.[ch],src/cs_utils.[ch] : Added Tim Davis' CSparse library
60            in cs.[ch] and utilities to interface to that code in cs_utils.[ch].
61    
62            * R/dtCMatrix.R, src/dtCMatrix.[ch] : CSparse-based solve methods
63            for the dtCMatrix class.
64    
65    2006-04-12  Douglas Bates  <bates@stat.wisc.edu>
66    
67            * R/pedigree.R, R/AllClass.R, NAMESPACE: added a pedigree class
68            and methods for it.
69    
70    2006-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
71    
72            * R/dgCMatrix.R: add  storage.mode(.) <- "double" for "matrix"
73            arguments, such that M %*% 1:6 now works
74            * Tests/matprod.R: test the above
75    
76    2006-04-03  Douglas Bates  <bates@stat.wisc.edu>
77    
78            * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
79            the ranef.lmer class.
80    
81            * R/AllClass.R, NAMESPACE, R/lmer.R: Added a postVar generic and
82            methods to extract the posterior variances from the bVar slot.
83    
84    2006-03-30  Martin Maechler  <maechler@stat.math.ethz.ch>
85    
86            * R/dtCMatrix.R: allow coercion from  dgC* to triangular (dtC*)
87            * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
88    
89            * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
90            * tests/simple: (extended)
91    
92            * R/sparseMatrix.R (isTriangular): now using much improved
93            * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
94    
95    2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
96    
97            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
98            (problem report from Franklin Parlamis).  This should be done
99            generally.
100    
101    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
102    
103            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
104            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
105            update the plot methods.
106    
107    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
108    
109            * R/lmer.R (resid and ranef methods):  Added methods for the
110            "residuals" and "resid" generic but only for linear mixed model
111            fits.  Changed the ranef method to return a list of data frames so
112            that the plot methods now work.
113    
114    2006-03-16  Douglas Bates  <bates@bates2>
115    
116            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
117            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
118    
119            * DESCRIPTION (Date): New release
120    
121    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
122    
123            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
124    
125            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
126            * man/KNex.Rd: and other help files
127            * tests/*.R: several ones needed adaption
128            * inst/doc/Comparisons.Rnw: dito
129    
130    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
131    
132            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
133    
134            * tests/indexing.R: tests for new [<- methods for sparse matrices.
135    
136    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
137    
138            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
139    
140            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
141    
142    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
143    
144            * R/dMatrix.R: enable things like  M [ M < 10 ]
145            * R/dgeMatrix.R: implement it
146    
147    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
148    
149            * R/AllClass.R: define "summary.mer" and "*.lmer"
150            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
151            * R/lmer.R (show): now works with summary()
152    
153    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
154    
155            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
156            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
157                    support the above
158    
159    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
160    
161            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
162            Use glmFit$prior.weights for weights in a glmm.
163            Allow an option usePQL = FALSE to skip the PQL steps for the
164            Laplace method (and, in time, the AGQ method).
165    
166            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
167            into a separate function internal_mer_Xfactor to be able to call
168            it from internal_bhat.
169    
170    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
171    
172            * tests/Class+Meth.R (tstMatrixClass): function for much better
173            testing; now again of all actual classes.
174    
175            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
176                    use macros and define make_d_matrix_* and make_i_matrix_*
177                    where _i_ is for the ldense routines:
178    
179            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
180            * src/ldense.c (lsyMatrix_as_lgeMatrix):
181    
182            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
183    
184    
185    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
186    
187            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
188                    many different kinds of matrices.
189            * R/*.R: quite a few new methods were needed for R CMD check with
190                    new Matrix().  Very good for users playing around.
191    
192    
193    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
194    
195            * src/dgeMatrix.c (dMatrix_validate): new
196            * src/Mutils.c (dense_nonpacked_validate): new
197    
198            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
199    
200    
201    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
202    
203            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
204    
205    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
206    
207            * DESCRIPTION (Version): 0.99-6 released to CRAN
208    
209            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
210            segfault in cases with multiple non-nested grouping factors.
211    
212    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
213    
214            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
215                    (Depends): also on 'utils'
216    
217            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
218            * R/diagMatrix.R (Diagonal): constructor and methods for
219            diagonal matrices
220    
221            * R/ltTMatrix.R: new "minimal methods"
222    
223    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
224    
225            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
226            all methods (and help files).
227    
228    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
229    
230            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
231                    for case (dimn.  op  no_dimn.)
232    
233    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
234    
235            * DESCRIPTION (Version): 0.99-2  released to CRAN
236    
237    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
238    
239            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
240            by Julian Faraway.
241    
242    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
243    
244            * R/Auxiliaries.R (try_as): new utility
245            * R/sparseMatrix.R: use try_as() in coercion to original class
246    
247    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
248    
249            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
250    
251    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
252    
253            * R/Auxiliaries.R (dimNamesCheck): added
254    
255            * R/Matrix.R (as.array), (as.vector): new
256    
257    2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
258    
259            * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
260                    default.
261            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
262                    "pMatrix" now contains "sparseMatrix"
263    
264    2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
265    
266            * tests/Class+Meth.R: new tests; t(t(m)) == m
267    
268            * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
269    
270            * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
271            * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
272    
273            * R/dspMatrix.R: typo in "t" method
274    
275    2005-09-18  Douglas Bates  <bates@wisc.edu>
276    
277            * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
278            * R/Tsparse.R: instead of R/gTMatrix.R
279            * R/Csparse.R: new
280            * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
281            * src/Tsparse.c: new; many trivial methods calling cholmod_()
282            * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
283                            via cholmod
284    
285    2005-09-16  Martin Maechler  <maechler@stat.math.ethz.ch>
286    
287            * R/Auxiliaries.R (non0ind): new function using new C code
288            * src/dgCMatrix.c (compressed_non_0_ij): new utility
289    
290    2005-09-15  Douglas Bates  <bates@localhost.localdomain>
291    
292            * src/chm_common.h: header file required by all C sources that
293            call CHOLMOD functions.  It defines a cholmod_common structure
294            called 'c' whose address is passed as the last argument to
295            (virtually) every CHOLMOD function.
296    
297            * src/Pattern.c: Simple example of the use of CHOLMOD.
298    
299            * src/init.c: initialize and finalize the cholmod_common structure.
300    
301            * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
302            LDL and CCOLAMD from the U. of Florida sparse matrix library.
303    
304    2005-09-08  Martin Maechler  <maechler@stat.math.ethz.ch>
305    
306            * inst/test-tools.R: new file collecting the utility functions used
307                    in ./tests/*.R
308    
309            * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
310            * R/Matrix.R (cbind2): methods for NULL and missing
311    
312    2005-08-31  Martin Maechler  <maechler@stat.math.ethz.ch>
313    
314            * R/AllClass.R: new "index" class for "[" and "[<-":
315                    First cut at "symmetricMatrix" and "triangularMatrix"
316            * R/gTMatrix.R (.ind.prep): new function;
317                    Logical and character indexing now work too.
318            * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
319            * tests/indexing.R: new, including *.Rout.save
320            * tests/dgTMatrix.R: new
321    
322    2005-08-29  Douglas Bates  <bates@wisc.edu>
323    
324            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
325            indicator pos not being updated.  Also enforced upper triangular
326            for symmetric case.  Need to coerce edges component of elements of
327            edge list - grr! (Why don't they define their classes cleanly?)
328    
329    2005-08-26  Martin Maechler  <maechler@stat.math.ethz.ch>
330    
331            * R/Matrix.R:  added first "[<-" methods; not yet functional
332            * R/denseMatrix.R: dito
333            * man/Subassign-methods.Rd: new help file for these
334    
335    2005-08-25  Martin Maechler  <maechler@stat.math.ethz.ch>
336    
337            * DESCRIPTION (Version): 0.98-6
338    
339            * R/denseMatrix.R: new file for "[" fallback methods for all dense
340            matrices.
341    
342    2005-08-19  Martin Maechler  <maechler@stat.math.ethz.ch>
343    
344            * src/lgCMatrix.c (lcsc_to_matrix): new; need for
345                    as( <logical>, "matrix")
346    
347            * R/pMatrix.R: coercion to "lgTMatrix"
348    
349            * R/gTMatrix.R: new virtual class to define "[" methods for.
350            * man/gTMatrix-class.Rd:
351            * General slight re-organization of where "[" methods are defined.
352              more to come.
353    
354    2005-08-18  Douglas Bates  <bates@wisc.edu>
355    
356            * DESCRIPTION (Version): 0.98-5  released to CRAN
357    
358            * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
359            * .....
360    
361    2005-08-18  Douglas Bates  <bates@localhost.localdomain>
362    
363            * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
364            or glmer objects.
365    
366    2005-08-17  Martin Maechler  <maechler@stat.math.ethz.ch>
367    
368            * DESCRIPTION (Version): 0.98-4 : upload to CRAN
369    
370    2005-08-16  Douglas Bates  <bates@localhost.localdomain>
371    
372            * R/HBMM.R: finish re-writing R-only code.
373    
374    2005-08-15  Douglas Bates  <bates@localhost.localdomain>
375    
376            * man/externalFormats.Rd: move documentation for writeHB and
377            writeMM here.
378    
379            * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
380            (suggested by Paul Roecker).
381    
382            * tests/validObj.R (assertError): Comment out test that is failing
383            after recent changes in r-devel.
384    
385    
386    2005-08-11  Martin Maechler  <maechler@stat.math.ethz.ch>
387    
388            * R/AllClass.R: intermediate virtual class "denseMatrix"
389            * man/denseMatrix-class.Rd
390            * NAMESPACE: export it, and also export
391            * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
392    
393    2005-08-10  Douglas Bates  <bates@wisc.edu>
394    
395            * DESCRIPTION (Version): 0.98-3 to CRAN
396    
397            * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
398            matrix_solve code (which was really, really wrong).
399    
400    2005-08-07  Douglas Bates  <bates@wisc.edu>
401    
402            * DESCRIPTION (Version): 0.98-2
403    
404            * R/HBMM.R (readHB), (readMM): read Matrix Market formats
405    
406            * R/lmer.R (abbrvNms): new
407            * R/lmer.R (mcmcsamp): allow transformed parameters
408            * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
409            for the Harwell-Boeing and the MatrixMarket formats.
410    
411    2005-08-04  Martin Maechler  <maechler@stat.math.ethz.ch>
412    
413            * man/dtrMatrix-class.Rd: add examples
414            * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
415    
416            * TODO: note the dtpMatrix (docu) bug
417    
418            * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
419            in order to ensure that new as.matrix() is used by old functions,
420            e.g., svd(), qr(), eigen(), dist(),..;
421                  apply(), also matplot() or pairs().
422    
423    
424    2005-08-03  Martin Maechler  <maechler@stat.math.ethz.ch>
425    
426            * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
427              add comments about 'control' / lmerControl() arguments
428    
429    2005-07-27  Douglas Bates  <bates@wisc.edu>
430    
431            * man/sleepstudy.Rd: Added the sleep data set.
432            * DESCRIPTION (Version): 0.98-1  released to CRAN
433    
434    2005-07-12  Douglas Bates  <bates@wisc.edu>
435            * man/sleepstudy.Rd: Added the sleep data set.
436    
437            * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
438            .Call calls that were producing spurious output.
439    
440    2005-07-05  Douglas Bates  <bates@wisc.edu>
441    
442            * R/lmer.R (lmer): stored updated variance component estimates in
443            mer object for the generalized model.  (Bug reported by Renaud
444            Lancelot).
445    
446    2005-07-03  Douglas Bates  <bates@wisc.edu>
447    
448            * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
449            unidimensional case.
450    
451    2005-06-08  Douglas Bates  <bates@wisc.edu>
452    
453            * DESCRIPTION (Version): 0.96-1
454    
455            * moved  lmer-class' R and C code moved from lme4 to here
456    
457    2005-06-04  Douglas Bates  <bates@wisc.edu>
458    
459            * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
460            (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
461    
462    2005-06-02  Douglas Bates  <bates@wisc.edu>
463    
464            * src/Makefile.win: Forgot to update this when Makefile changed.
465    
466    2005-05-11  Douglas Bates  <bates@wisc.edu>
467    
468            * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
469            bug reported by Kurt Hornik and Michael Hahsler.
470    
471    2005-05-10  Douglas Bates  <bates@wisc.edu>
472    
473            * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
474            logical sparse matrices.  These will also be used in the symbolic
475            analysis for lmer objects.
476    
477            * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
478            of b to the result.  Fixes bug reported by Jean.Coursol@math.u-psud.fr
479    
480    2005-05-06  Douglas Bates  <bates@wisc.edu>
481    
482            * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
483            colMeans, colSums, rowMeans and rowSums.
484    
485    2005-04-18  Douglas Bates  <bates@wisc.edu>
486    
487            * src/lgCMatrix.[ch]: code for _validate method and stub for
488            multiplication operation.
489    
490            * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
491            to dgetrs.
492    
493            * src/init.c: Fix cut-and-paste error in definition of
494            dgeMatrix_matrix_solve
495    
496            * src/{many files}: Tighten code by using ALLOC_SLOT.
497    
498    2005-04-15  Douglas Bates  <bates@wisc.edu>
499    
500            * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
501    
502            * DESCRIPTION: Eliminate import of stats.
503    
504    
505    2005-04-06  Douglas Bates  <bates@wisc.edu>
506    
507            * R/AllClass.R : add logical sparse matrix classes
508    
509    2005-04-01  Martin Maechler  <maechler@stat.math.ethz.ch>
510    
511            * R/dgTMatrix.R: add "[" method for triplet matrices
512            * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
513    
514    2005-03-31  Douglas Bates  <bates@wisc.edu>
515    
516            * DESCRIPTION (Version): release 0.95-5 to CRAN
517    
518            * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
519            * R/sparseMatrix.R: %*%, crossprod()
520            * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
521            * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
522            * src/lmer.c (lmer_fitted): fix thinko
523    
524    2005-03-26  Martin Maechler  <maechler@stat.math.ethz.ch>
525    
526            * R/AllClass.R: add two virtual sparse classes ``on top''
527    
528    2005-03-24  Martin Maechler  <maechler@stat.math.ethz.ch>
529    
530            * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
531                    correspondingly fix examples and tests/ since new()
532                    doesn't work for virtual classes.
533    
534    2005-03-17  Martin Maechler  <maechler@stat.math.ethz.ch>
535    
536            * R/Matrix.R (as.matrix): method and one for unname()
537            * tests/dpoMatrix.R: tests should now be less platform dependent;
538              also run for R 2.1.0; using as.matrix()
539    
540    2005-03-15  Douglas Bates  <bates@wisc.edu>
541    
542            * R/pMatrix.R: "pMatrix" class added
543            * ....
544    
545    2005-03-14  Douglas Bates  <bates@wisc.edu>
546    
547            * R/dtpMatrix.R: Add unpack method and an example.
548    
549            * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
550            of general symmetric matrices and associated S4 methods.
551    
552    2005-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
553            +
554    2005-03-05  Martin Maechler  <maechler@stat.math.ethz.ch>
555    
556            * R/dgeMatrix.R (setAs): and many other files: more coercion,
557              crossprod() and "%*%" methods added; tests, too.
558            * tests/matprod.R: new, for testing these
559    
560    2005-03-03  Douglas Bates  <bates@wisc.edu>
561    
562            * src/lmer.c (lmer_fitted): Added.
563    
564    2005-03-02  Douglas Bates  <bates@wisc.edu>
565    
566            * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
567    
568    2005-02-28  Douglas Bates  <bates@wisc.edu>
569    
570            * src/*.c,po/,inst/po: Internationalization and localization of
571            the package.
572    
573            * src/ldl.[ch]: Removed these as their contents are referenced in the
574            R_ldl.c file.
575    
576            * src/flame.[ch]: Removed these source files.
577    
578            * src/dtrMatrix.c (make_array_triangular): Move to Mutils
579    
580            * src/LU.[ch],src/init.c: absorb in factorizations
581    
582            * src/Mutils.h: prepare for internationalization
583    
584            * src/cblas.h: move the enum definitions to Mutils.h and remove
585            this file
586    
587    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
588    
589            * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
590    
591            * R/dtrMatrix.R: fix t() method
592    
593            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
594            * NAMESPACE: export them (and import generics from "methods")
595            * tests/group-methods.R : and test them.
596    
597            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
598            border case
599    
600    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
601    
602            * DESCRIPTION (Version): 0.95-2  released to CRAN
603    
604            * src/dgBCMatrix.c:
605            * src/lmer.c: many changes
606            * ...
607    
608    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
609    
610            * R/Matrix.R: add more sophisticated show() method.
611    
612    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
613    
614            * */* : almost complete reorganization of classes.
615    
616    2005-01-26  Douglas Bates  <bates@wisc.edu>
617    
618            * R/AllGeneric.R: Added matrix exponential generic expm and a method
619            for the geMatrix class.
620    
621    2005-01-24  Douglas Bates  <bates@wisc.edu>
622    
623            * src/Makefile (clean): Remove *.a and *.so
624    
625            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
626    
627    2005-01-23  Douglas Bates  <bates@wisc.edu>
628    
629            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
630            had an effect in cases with more than 2 grouping factors.
631    
632    2005-01-03  Douglas Bates  <bates@wisc.edu>
633    
634            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
635    
636    2004-12-23  Douglas Bates  <bates@wisc.edu>
637    
638            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
639            and R_useDynamicSymbols (suggested by B.D.Ripley).
640    
641    2004-12-14  Douglas Bates  <bates@wisc.edu>
642    
643            * R/sscMatrix.R: Add determinant methods
644    
645            * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
646            for tripletMatrix to matrix.
647    
648    2004-12-13  Douglas Bates  <bates@wisc.edu>
649    
650            * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
651            no longer used.
652    
653            * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
654            with dynamic allocation of scratch arrays.
655    
656            * src/ssclme.c (ssclme_copy_ctab): Fixed bug in creation of ZtZ
657            for multivariate random effects with multiple grouping factors.
658            Fixes part but not all of #15.
659    
660    2004-12-03  Douglas Bates  <bates@wisc.edu>
661    
662            * src/lmeRep.c (lmeRep_factor): order of operations for multiple
663            scalar grouping factors corrected.
664    
665    2004-11-29  Douglas Bates  <bates@wisc.edu>
666    
667            * src/bCrosstab.c: remove diag_update which is no longer used
668    
669    2004-11-16  Douglas Bates  <bates@wisc.edu>
670    
671            * src/Metis_utils.c: Move metis.h include to C sources so that the
672            .h file can be included.
673    
674    2004-11-12  Douglas Bates  <bates@wisc.edu>
675    
676            * src/LU.c,geMatrix.c,trMatrix.c, etc.:
677            Complete allocation of slots in NEW_OBJECT.
678    
679            * src/Mutils.h: Moved list of symbols to an include file
680    
681    2004-11-11  Douglas Bates  <bates@wisc.edu>
682    
683            * src/geMutils.c (Matrix_init): remove unused function
684    
685    2004-11-10  Douglas Bates  <bates@wisc.edu>
686    
687            * src/cscMatrix.c (csc_to_imagemat): removed unused function
688    
689    2004-11-05  Douglas Bates  <bates@wisc.edu>
690    
691            * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
692    
693    2004-10-27  Douglas Bates  <bates@wisc.edu>
694    
695            * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
696    
697    2004-10-04  Douglas Bates  <bates@wisc.edu>
698    
699            * src/init.c: Created R_init_Matrix and added registration of C
700            routines.
701    
702    2004-10-02  Douglas Bates  <bates@wisc.edu>
703    
704            * R/tripletMatrix.R: Force a require(lattice) for the image methods.
705    
706    2004-06-15  Douglas Bates  <bates@wisc.edu>
707    
708            * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
709    
710    2004-04-20  Douglas Bates  <bates@stat.wisc.edu>
711    
712            * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
713    
714    2004-04-19  Douglas Bates  <bates@stat.wisc.edu>
715    
716            * src/ssclme.c (ssclme_update_mm): fix logic error in
717            ssclme_update_mm
718    
719  2004-04-18  Douglas Bates  <bates@stat.wisc.edu>  2004-04-18  Douglas Bates  <bates@stat.wisc.edu>
720    
721          * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency          * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency

Legend:
Removed from v.105  
changed lines
  Added in v.1271

root@r-forge.r-project.org
ViewVC Help
Powered by ViewVC 1.0.0  
Thanks to:
Vienna University of Economics and Business Powered By FusionForge