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Diff of /pkg/ChangeLog

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revision 954, Wed Sep 28 19:34:31 2005 UTC revision 1213, Tue Feb 7 23:44:07 2006 UTC
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1    2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
2    
3            * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.
4            Use glmFit$prior.weights for weights in a glmm.
5            Allow an option usePQL = FALSE to skip the PQL steps for the
6            Laplace method (and, in time, the AGQ method).
7    
8            * src/lmer.c (mer_factor): Move downdating and factoring of XtX
9            into a separate function internal_mer_Xfactor to be able to call
10            it from internal_bhat.
11    
12    2006-01-23  Martin Maechler  <maechler@stat.math.ethz.ch>
13    
14            * tests/Class+Meth.R (tstMatrixClass): function for much better
15            testing; now again of all actual classes.
16    
17            * src/Mutils.c (MAKE_TRIANGULAR_BODY, MAKE_SYMMETRIC_BODY):
18                    use macros and define make_d_matrix_* and make_i_matrix_*
19                    where _i_ is for the ldense routines:
20    
21            * src/ldense.c (ltrMatrix_as_lgeMatrix): provide functions
22            * src/ldense.c (lsyMatrix_as_lgeMatrix):
23    
24            * R/ldenseMatrix.R: use the above in setAs(*,"lgeMatrix")
25    
26    
27    2006-01-16  Martin Maechler  <maechler@stat.math.ethz.ch>
28    
29            * R/Matrix.R (Matrix): has become much "smarter" now auto-producing
30                    many different kinds of matrices.
31            * R/*.R: quite a few new methods were needed for R CMD check with
32                    new Matrix().  Very good for users playing around.
33    
34    
35    2006-01-15  Martin Maechler  <maechler@stat.math.ethz.ch>
36    
37            * src/dgeMatrix.c (dMatrix_validate): new
38            * src/Mutils.c (dense_nonpacked_validate): new
39    
40            * src/dtrMatrix.c (dtrMatrix_validate): improved/fixed
41    
42    
43    2006-01-14  Douglas Bates  <bates@stat.wisc.edu>
44    
45            * R/AllClass.R (compMatrix), (generalMatrix): new virtual classes
46    
47    2006-01-07  Douglas Bates  <bates@stat.wisc.edu>
48    
49            * DESCRIPTION (Version): 0.99-6 released to CRAN
50    
51            * src/dgBCMatrix.c (cscb_trcbsm): Fix due to Peter Dalgaard for
52            segfault in cases with multiple non-nested grouping factors.
53    
54    2006-01-03  Martin Maechler  <maechler@stat.math.ethz.ch>
55    
56            * DESCRIPTION (Version): 0.99-4 to be released to CRAN
57                    (Depends): also on 'utils'
58    
59            * R/AllClass.R (diagonalMatrix): new class with "ddi*" and "ldi*"
60            * R/diagMatrix.R (Diagonal): constructor and methods for
61            diagonal matrices
62    
63            * R/ltTMatrix.R: new "minimal methods"
64    
65    2005-12-12  Martin Maechler  <maechler@stat.math.ethz.ch>
66    
67            * R/AllGeneric.R (tcrossprod): 2-argument version; here, and for
68            all methods (and help files).
69    
70    2005-12-09  Martin Maechler  <maechler@stat.math.ethz.ch>
71    
72            * R/Auxiliaries.R (dimNamesCheck): fixed thinko -> bug
73                    for case (dimn.  op  no_dimn.)
74    
75    2005-11-14  Douglas Bates  <bates@stat.wisc.edu>
76    
77            * DESCRIPTION (Version): 0.99-2  released to CRAN
78    
79    2005-10-21  Douglas Bates  <bates@stat.wisc.edu>
80    
81            * R/lmer.R (simulate method): Fixed a drop=FALSE problem reported
82            by Julian Faraway.
83    
84    2005-10-06  Martin Maechler  <maechler@stat.math.ethz.ch>
85    
86            * R/Auxiliaries.R (try_as): new utility
87            * R/sparseMatrix.R: use try_as() in coercion to original class
88    
89    2005-09-30  Martin Maechler  <maechler@stat.math.ethz.ch>
90    
91            * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
92    
93    2005-09-29  Martin Maechler  <maechler@stat.math.ethz.ch>
94    
95            * R/Auxiliaries.R (dimNamesCheck): added
96    
97            * R/Matrix.R (as.array), (as.vector): new
98    
99  2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>  2005-09-28  Martin Maechler  <maechler@stat.math.ethz.ch>
100    
101          * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart          * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
102          default.          default.
103            * R/AllClass.R: move 'factors' slot toplevel "Matrix";
104                    "pMatrix" now contains "sparseMatrix"
105    
106  2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>  2005-09-26  Martin Maechler  <maechler@stat.math.ethz.ch>
107    

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