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revision 1213, Tue Feb 7 23:44:07 2006 UTC revision 1264, Mon May 15 21:05:20 2006 UTC
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1    2006-05-15  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/Tsparse.R ("["): column or row subsetting; @Dimnames[k] got
4            erased when it was NULL.  This led to invalid subselections!
5    
6    2006-04-25  Douglas Bates  <bates@stat.wisc.edu>
7    
8            * R/dtCMatrix.R: avoid coercion of dtCMatrix object to dgCMatrix
9            in method for "t" so as not to lose the unit diagonal property.
10    
11    2006-04-19  Douglas Bates  <bates@stat.wisc.edu>
12    
13            * R/lmer.R, R/AllGeneric.R, NAMESPACE: Remove the postVar generic
14            and methods.  This is now an option to the ranef method for the
15            mer class.
16    
17            * src/cs_utils.c: Ensure that the nz component is -1 for a
18            compressed column-oriented matrix.  Minor formatting cleanup.
19    
20            * man/lmer-class.Rd: Document the qqmath method for ranef.lmer
21            objects.
22    
23    2006-04-19  Martin Maechler  <maechler@stat.math.ethz.ch>
24    
25            * R/Auxiliaries.R (diagU2N): new for the solve() methods in
26            * R/dtCMatrix.R: where dgC -> dgT coercion now preserves diag = "U".
27    
28    2006-04-15  Douglas Bates  <bates@stat.wisc.edu>
29    
30            * src/cs.[ch],src/cs_utils.[ch] : Added Tim Davis' CSparse library
31            in cs.[ch] and utilities to interface to that code in cs_utils.[ch].
32    
33            * R/dtCMatrix.R, src/dtCMatrix.[ch] : CSparse-based solve methods
34            for the dtCMatrix class.
35    
36    2006-04-12  Douglas Bates  <bates@stat.wisc.edu>
37    
38            * R/pedigree.R, R/AllClass.R, NAMESPACE: added a pedigree class
39            and methods for it.
40    
41    2006-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
42    
43            * R/dgCMatrix.R: add  storage.mode(.) <- "double" for "matrix"
44            arguments, such that M %*% 1:6 now works
45            * Tests/matprod.R: test the above
46    
47    2006-04-03  Douglas Bates  <bates@stat.wisc.edu>
48    
49            * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
50            the ranef.lmer class.
51    
52            * R/AllClass.R, NAMESPACE, R/lmer.R: Added a postVar generic and
53            methods to extract the posterior variances from the bVar slot.
54    
55    2006-03-30  Martin Maechler  <maechler@stat.math.ethz.ch>
56    
57            * R/dtCMatrix.R: allow coercion from  dgC* to triangular (dtC*)
58            * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
59    
60            * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
61            * tests/simple: (extended)
62    
63            * R/sparseMatrix.R (isTriangular): now using much improved
64            * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
65    
66    2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
67    
68            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
69            (problem report from Franklin Parlamis).  This should be done
70            generally.
71    
72    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
73    
74            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
75            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
76            update the plot methods.
77    
78    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
79    
80            * R/lmer.R (resid and ranef methods):  Added methods for the
81            "residuals" and "resid" generic but only for linear mixed model
82            fits.  Changed the ranef method to return a list of data frames so
83            that the plot methods now work.
84    
85    2006-03-16  Douglas Bates  <bates@bates2>
86    
87            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
88            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
89    
90            * DESCRIPTION (Date): New release
91    
92    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
93    
94            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
95    
96            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
97            * man/KNex.Rd: and other help files
98            * tests/*.R: several ones needed adaption
99            * inst/doc/Comparisons.Rnw: dito
100    
101    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
102    
103            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
104    
105            * tests/indexing.R: tests for new [<- methods for sparse matrices.
106    
107    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
108    
109            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
110    
111            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
112    
113    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
114    
115            * R/dMatrix.R: enable things like  M [ M < 10 ]
116            * R/dgeMatrix.R: implement it
117    
118    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
119    
120            * R/AllClass.R: define "summary.mer" and "*.lmer"
121            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
122            * R/lmer.R (show): now works with summary()
123    
124    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
125    
126            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
127            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
128                    support the above
129    
130  2006-02-07  Douglas Bates  <bates@stat.wisc.edu>  2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
131    
132          * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.          * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.

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