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revision 1213, Tue Feb 7 23:44:07 2006 UTC revision 1253, Wed Apr 19 09:17:14 2006 UTC
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1    2006-04-19  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/Auxiliaries.R (diagU2N): new for the solve() methods in
4            * R/dtCMatrix.R: where dgC -> dgT coercion now preserves diag = "U".
5    
6    2006-04-15  Douglas Bates  <bates@stat.wisc.edu>
7    
8            * src/cs.[ch],src/cs_utils.[ch] : Added Tim Davis' CSparse library
9            in cs.[ch] and utilities to interface to that code in cs_utils.[ch].
10    
11            * R/dtCMatrix.R, src/dtCMatrix.[ch] : CSparse-based solve methods
12            for the dtCMatrix class.
13    
14    2006-04-12  Douglas Bates  <bates@stat.wisc.edu>
15    
16            * R/pedigree.R, R/AllClass.R, NAMESPACE: added a pedigree class
17            and methods for it.
18    
19    2006-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
20    
21            * R/dgCMatrix.R: add  storage.mode(.) <- "double" for "matrix"
22            arguments, such that M %*% 1:6 now works
23            * Tests/matprod.R: test the above
24    
25    2006-04-03  Douglas Bates  <bates@stat.wisc.edu>
26    
27            * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
28            the ranef.lmer class.
29    
30            * R/AllClass.R, NAMESPACE, R/lmer.R: Added a postVar generic and
31            methods to extract the posterior variances from the bVar slot.
32    
33    2006-03-30  Martin Maechler  <maechler@stat.math.ethz.ch>
34    
35            * R/dtCMatrix.R: allow coercion from  dgC* to triangular (dtC*)
36            * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
37    
38            * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
39            * tests/simple: (extended)
40    
41            * R/sparseMatrix.R (isTriangular): now using much improved
42            * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
43    
44    2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
45    
46            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
47            (problem report from Franklin Parlamis).  This should be done
48            generally.
49    
50    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
51    
52            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
53            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
54            update the plot methods.
55    
56    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
57    
58            * R/lmer.R (resid and ranef methods):  Added methods for the
59            "residuals" and "resid" generic but only for linear mixed model
60            fits.  Changed the ranef method to return a list of data frames so
61            that the plot methods now work.
62    
63    2006-03-16  Douglas Bates  <bates@bates2>
64    
65            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
66            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
67    
68            * DESCRIPTION (Date): New release
69    
70    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
71    
72            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
73    
74            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
75            * man/KNex.Rd: and other help files
76            * tests/*.R: several ones needed adaption
77            * inst/doc/Comparisons.Rnw: dito
78    
79    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
80    
81            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
82    
83            * tests/indexing.R: tests for new [<- methods for sparse matrices.
84    
85    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
86    
87            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
88    
89            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
90    
91    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
92    
93            * R/dMatrix.R: enable things like  M [ M < 10 ]
94            * R/dgeMatrix.R: implement it
95    
96    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
97    
98            * R/AllClass.R: define "summary.mer" and "*.lmer"
99            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
100            * R/lmer.R (show): now works with summary()
101    
102    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
103    
104            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
105            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
106                    support the above
107    
108  2006-02-07  Douglas Bates  <bates@stat.wisc.edu>  2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
109    
110          * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.          * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.

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