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revision 1213, Tue Feb 7 23:44:07 2006 UTC revision 1251, Sat Apr 15 13:08:26 2006 UTC
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1    2006-04-15  Douglas Bates  <bates@stat.wisc.edu>
2    
3            * src/cs.[ch],src/cs_utils.[ch] : Added Tim Davis' CSparse library
4            in cs.[ch] and utilities to interface to that code in cs_utils.[ch].
5    
6            * R/dtCMatrix.R, src/dtCMatrix.[ch] : CSparse-based solve methods
7            for the dtCMatrix class.
8    
9    2006-04-12  Douglas Bates  <bates@stat.wisc.edu>
10    
11            * R/pedigree.R, R/AllClass.R, NAMESPACE: added a pedigree class
12            and methods for it.
13    
14    2006-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
15    
16            * R/dgCMatrix.R: add  storage.mode(.) <- "double" for "matrix"
17            arguments, such that M %*% 1:6 now works
18            * Tests/matprod.R: test the above
19    
20    2006-04-03  Douglas Bates  <bates@stat.wisc.edu>
21    
22            * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
23            the ranef.lmer class.
24    
25            * R/AllClass.R, NAMESPACE, R/lmer.R: Added a postVar generic and
26            methods to extract the posterior variances from the bVar slot.
27    
28    2006-03-30  Martin Maechler  <maechler@stat.math.ethz.ch>
29    
30            * R/dtCMatrix.R: allow coercion from  dgC* to triangular (dtC*)
31            * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
32    
33            * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
34            * tests/simple: (extended)
35    
36            * R/sparseMatrix.R (isTriangular): now using much improved
37            * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
38    
39    2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
40    
41            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
42            (problem report from Franklin Parlamis).  This should be done
43            generally.
44    
45    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
46    
47            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
48            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
49            update the plot methods.
50    
51    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
52    
53            * R/lmer.R (resid and ranef methods):  Added methods for the
54            "residuals" and "resid" generic but only for linear mixed model
55            fits.  Changed the ranef method to return a list of data frames so
56            that the plot methods now work.
57    
58    2006-03-16  Douglas Bates  <bates@bates2>
59    
60            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
61            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
62    
63            * DESCRIPTION (Date): New release
64    
65    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
66    
67            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
68    
69            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
70            * man/KNex.Rd: and other help files
71            * tests/*.R: several ones needed adaption
72            * inst/doc/Comparisons.Rnw: dito
73    
74    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
75    
76            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
77    
78            * tests/indexing.R: tests for new [<- methods for sparse matrices.
79    
80    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
81    
82            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
83    
84            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
85    
86    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
87    
88            * R/dMatrix.R: enable things like  M [ M < 10 ]
89            * R/dgeMatrix.R: implement it
90    
91    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
92    
93            * R/AllClass.R: define "summary.mer" and "*.lmer"
94            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
95            * R/lmer.R (show): now works with summary()
96    
97    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
98    
99            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
100            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
101                    support the above
102    
103  2006-02-07  Douglas Bates  <bates@stat.wisc.edu>  2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
104    
105          * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.          * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.

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