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revision 1213, Tue Feb 7 23:44:07 2006 UTC revision 1247, Thu Apr 13 11:12:51 2006 UTC
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1    2006-04-12  Douglas Bates  <bates@stat.wisc.edu>
2    
3            * R/pedigree.R, R/AllClass.R, NAMESPACE: added a pedigree class
4            and methods for it.
5    
6    2006-04-12  Martin Maechler  <maechler@stat.math.ethz.ch>
7    
8            * R/dgCMatrix.R: add  storage.mode(.) <- "double" for "matrix"
9            arguments, such that M %*% 1:6 now works
10            * Tests/matprod.R: test the above
11    
12    2006-04-03  Douglas Bates  <bates@stat.wisc.edu>
13    
14            * R/lmer.R (qqmath,ranef.lmer-method): added a qqmath method for
15            the ranef.lmer class.
16    
17            * R/AllClass.R, NAMESPACE, R/lmer.R: Added a postVar generic and
18            methods to extract the posterior variances from the bVar slot.
19    
20    2006-03-30  Martin Maechler  <maechler@stat.math.ethz.ch>
21    
22            * R/dtCMatrix.R: allow coercion from  dgC* to triangular (dtC*)
23            * R/dsCMatrix.R: and symmetric (dsC*) 'Csparse' matrices.
24    
25            * R/Tsparse.R: Tsparse* -> Csparse* coercion now works and is tested in
26            * tests/simple: (extended)
27    
28            * R/sparseMatrix.R (isTriangular): now using much improved
29            * R/Auxiliaries.R (isTriC): new triangularity check for *CMatrix
30    
31    2006-03-23  Douglas Bates  <bates@stat.wisc.edu>
32    
33            * src/dsyMatrix.c (dsyMatrix_as_dspMatrix): Propagate DimNames
34            (problem report from Franklin Parlamis).  This should be done
35            generally.
36    
37    2006-03-21  Douglas Bates  <bates@stat.wisc.edu>
38    
39            * R/AllClass.R,lmer.R: Change the name of the lmer.ranef class to
40            ranef.lmer (like summary.lmer).  Add the coef.lmer class and
41            update the plot methods.
42    
43    2006-03-20  Douglas Bates  <bates@stat.wisc.edu>
44    
45            * R/lmer.R (resid and ranef methods):  Added methods for the
46            "residuals" and "resid" generic but only for linear mixed model
47            fits.  Changed the ranef method to return a list of data frames so
48            that the plot methods now work.
49    
50    2006-03-16  Douglas Bates  <bates@bates2>
51    
52            * src/dpoMatrix.c (dpoMatrix_chol): Require n > 0 in call to
53            dpotrf - otherwise the BLAS on Mac OS X complains and quits.
54    
55            * DESCRIPTION (Date): New release
56    
57    2006-03-15  Martin Maechler  <maechler@stat.math.ethz.ch>
58    
59            * DESCRIPTION (Version): 0.995-6  -- to be released to CRAN
60    
61            * data/KNex.rda: replacing 'mm' and 'y' by KNex <- list(mm=mm, y=y)
62            * man/KNex.Rd: and other help files
63            * tests/*.R: several ones needed adaption
64            * inst/doc/Comparisons.Rnw: dito
65    
66    2006-03-11  Martin Maechler  <maechler@stat.math.ethz.ch>
67    
68            * R/dgCMatrix.R (replCmat): "[<-" methods for dgCMatrix
69    
70            * tests/indexing.R: tests for new [<- methods for sparse matrices.
71    
72    2006-03-10  Martin Maechler  <maechler@stat.math.ethz.ch>
73    
74            * R/dgTMatrix.R (replTmat): "[<-" methods for dgTMatrix
75    
76            * R/Tsparse.R (.ind.prep): fix out-of-range indexing
77    
78    2006-03-08  Martin Maechler  <maechler@stat.math.ethz.ch>
79    
80            * R/dMatrix.R: enable things like  M [ M < 10 ]
81            * R/dgeMatrix.R: implement it
82    
83    2006-03-06  Martin Maechler  <maechler@stat.math.ethz.ch>
84    
85            * R/AllClass.R: define "summary.mer" and "*.lmer"
86            * R/lmer.R (summary): summary(<mer>) computes & returns the above;
87            * R/lmer.R (show): now works with summary()
88    
89    2006-03-04  Martin Maechler  <maechler@stat.math.ethz.ch>
90    
91            * R/dgCMatrix.R: finally direct "Arith"  dgC o dgC
92            * R/Auxiliaries.R (WhichintersectInd): and other utilities to
93                    support the above
94    
95  2006-02-07  Douglas Bates  <bates@stat.wisc.edu>  2006-02-07  Douglas Bates  <bates@stat.wisc.edu>
96    
97          * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.          * R/lmer.R (lmer): fix initial values of offset and weights for glm.fit.

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