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revision 10, Mon Mar 22 20:20:05 2004 UTC revision 578, Sat Feb 26 18:25:09 2005 UTC
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1    2005-02-26  Martin Maechler  <maechler@stat.math.ethz.ch>
2    
3            * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
4            * NAMESPACE: export them (and import generics from "methods")
5            * tests/group-methods.R : and test them.
6    
7            * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
8            border case
9    
10    2005-02-24  Douglas Bates  <bates@stat.wisc.edu>
11    
12            * DESCRIPTION (Version): 0.95-2  released to CRAN
13    
14            * src/dgBCMatrix.c:
15            * src/lmer.c: many changes
16            * ...
17    
18    2005-02-04  Martin Maechler  <maechler@stat.math.ethz.ch>
19    
20            * R/Matrix.R: add more sophisticated show() method.
21    
22    2005-02-02  Douglas Bates  <bates@stat.wisc.edu>
23    
24            * */* : almost complete reorganization of classes.
25    
26    2005-01-26  Douglas Bates  <bates@bates7>
27    
28            * R/AllGeneric.R: Added matrix exponential generic expm and a method
29            for the geMatrix class.
30    
31    2005-01-24  Douglas Bates  <bates@bates7>
32    
33            * src/Makefile (clean): Remove *.a and *.so
34    
35            * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
36    
37    2005-01-23  Douglas Bates  <bates@bates7>
38    
39            * src/lmer.c (Lind): Definition of Lind was backwards.  This only
40            had an effect in cases with more than 2 grouping factors.
41    
42    2005-01-03  Douglas Bates  <bates@bates1-home>
43    
44            * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
45    
46    2004-12-23  Douglas Bates  <bates@bates1-home>
47    
48            * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
49            and R_useDynamicSymbols (suggested by B.D.Ripley).
50    
51    2004-12-14  Douglas Bates  <bates@bates1-home>
52    
53            * R/sscMatrix.R: Add determinant methods
54    
55            * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
56            for tripletMatrix to matrix.
57    
58    2004-12-13  Douglas Bates  <bates@bates1-home>
59    
60            * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
61            no longer used.
62    
63            * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
64            with dynamic allocation of scratch arrays.
65    
66            * src/ssclme.c (ssclme_copy_ctab): Fixed bug in creation of ZtZ
67            for multivariate random effects with multiple grouping factors.
68            Fixes part but not all of #15.
69    
70    2004-12-03  Douglas Bates  <bates@bates1-home>
71    
72            * src/lmeRep.c (lmeRep_factor): order of operations for multiple
73            scalar grouping factors corrected.
74    
75    2004-11-29  Douglas Bates  <bates@bates1-home>
76    
77            * src/bCrosstab.c: remove diag_update which is no longer used
78    
79    2004-11-16  Douglas Bates  <bates@bates1-home>
80    
81            * src/Metis_utils.c: Move metis.h include to C sources so that the
82            .h file can be included.
83    
84    2004-11-12  Douglas Bates  <bates@bates1-home>
85    
86            * src/LU.c,geMatrix.c,trMatrix.c, etc.:
87            Complete allocation of slots in NEW_OBJECT.
88    
89            * src/Mutils.h: Moved list of symbols to an include file
90    
91    2004-11-11  Douglas Bates  <bates@bates1-home>
92    
93            * src/geMutils.c (Matrix_init): remove unused function
94    
95    2004-11-10  Douglas Bates  <bates@bates1-home>
96    
97            * src/cscMatrix.c (csc_to_imagemat): removed unused function
98    
99    2004-11-05  Douglas Bates  <bates@bates1-home>
100    
101            * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
102    
103    2004-10-27  Douglas Bates  <bates@bates1-home>
104    
105            * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
106    
107    2004-10-04  Douglas Bates  <bates@bates1-home>
108    
109            * src/init.c: Created R_init_Matrix and added registration of C
110            routines.
111    
112    2004-10-02  Douglas Bates  <bates@bates1-home>
113    
114            * R/tripletMatrix.R: Force a require(lattice) for the image methods.
115    
116    2004-06-15  Douglas Bates  <bates@bates7>
117    
118            * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
119    
120    2004-04-20  Douglas Bates  <bates@stat.wisc.edu>
121    
122            * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
123    
124    2004-04-19  Douglas Bates  <bates@stat.wisc.edu>
125    
126            * src/ssclme.c (ssclme_update_mm): fix logic error in
127            ssclme_update_mm
128    
129    2004-04-18  Douglas Bates  <bates@stat.wisc.edu>
130    
131            * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
132            in the order of unconstrained and constrained parameters.
133            (ssclme_gradient): Added the gradients (not yet correct for
134            multidimensional, unconstrained case).
135    
136    2004-04-14  Douglas Bates  <bates@stat.wisc.edu>
137    
138            * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
139    
140            * src/Makefile.win: Remove unneeded ranlib call
141    
142    2004-04-12  Douglas Bates  <bates@stat.wisc.edu>
143    
144            * DESCRIPTION (Version): New release
145    
146            * src/Makefile.win: Update Makefile.win to umfpack removal.
147    
148    2004-04-05  Douglas Bates  <bates@bates2_home>
149    
150            * src/triplet_to_col.c: Create triplet_to_col as a native
151            function, not the version from umfpack.  There were problems with
152            the configuration of UMFPACK for 64-bit processors and there was
153            only one umfpack routine being used so I moved it here.
154    
155    2004-04-04  Douglas Bates  <bates@bates2_home>
156    
157            * src/ssclme.c (ssclme_variances): New function.
158    
159    2004-03-28  Douglas Bates  <bates@bates2_home>
160    
161            * src/ssclme.c (ssclme_fitted): Added function.
162    
163    2004-03-27  Douglas Bates  <bates@bates2_home>
164    
165            * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
166            store the dimnames in the XtX and bVar slots
167            (ssclme_update_mm): Change the dimensions of the bVar slot
168            components and the returned value from ssclme_ranef.
169    
170  2004-03-18  Douglas Bates  <bates@stat.wisc.edu>  2004-03-18  Douglas Bates  <bates@stat.wisc.edu>
171    
172          * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},          * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},

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