SCM

SCM Repository

[matrix] Annotation of /pkg/ChangeLog
ViewVC logotype

Annotation of /pkg/ChangeLog

Parent Directory Parent Directory | Revision Log Revision Log


Revision 976 - (view) (download)

1 : maechler 976 2005-10-06 Martin Maechler <maechler@stat.math.ethz.ch>
2 :    
3 :     * R/Auxiliaries.R (try_as): new utility
4 :     * R/sparseMatrix.R: use try_as() in coercion to original class
5 :    
6 : maechler 956 2005-09-30 Martin Maechler <maechler@stat.math.ethz.ch>
7 :    
8 :     * src/dgCMatrix.c (double_to_csc): and dgeMatrix_to_csc()
9 :    
10 :     2005-09-29 Martin Maechler <maechler@stat.math.ethz.ch>
11 :    
12 :     * R/Auxiliaries.R (dimNamesCheck): added
13 :    
14 :     * R/Matrix.R (as.array), (as.vector): new
15 :    
16 : maechler 954 2005-09-28 Martin Maechler <maechler@stat.math.ethz.ch>
17 :    
18 :     * R/Matrix.R (Matrix): get logical argument 'sparse' with a smart
19 : maechler 956 default.
20 :     * R/AllClass.R: move 'factors' slot toplevel "Matrix";
21 :     "pMatrix" now contains "sparseMatrix"
22 : maechler 954
23 : maechler 948 2005-09-26 Martin Maechler <maechler@stat.math.ethz.ch>
24 :    
25 :     * tests/Class+Meth.R: new tests; t(t(m)) == m
26 :    
27 :     * src/dtCMatrix.c (tsc_transpose): add forgotten "diag" slot
28 :    
29 :     * src/dsTMatrix.c (dsTMatrix_as_dsCMatrix): bad typo (segfault!)
30 :     * src/dtTMatrix.c (dtTMatrix_as_dtCMatrix): new
31 :    
32 :     * R/dspMatrix.R: typo in "t" method
33 :    
34 : maechler 925 2005-09-18 Douglas Bates <bates@wisc.edu>
35 :    
36 :     * R/AllClass.R (TsparseMatrix), CsparseM* and RsparseM*
37 :     * R/Tsparse.R: instead of R/gTMatrix.R
38 :     * R/Csparse.R: new
39 :     * src/Tsparse.c (Tsparse_to_Csparse): new; -> cholmod_()
40 :     * src/Tsparse.c: new; many trivial methods calling cholmod_()
41 :     * src/Csparse.c (Csparse_to_Tsparse), transpose, (mat|cross)prod:
42 :     via cholmod
43 :    
44 :     2005-09-16 Martin Maechler <maechler@stat.math.ethz.ch>
45 :    
46 :     * R/Auxiliaries.R (non0ind): new function using new C code
47 :     * src/dgCMatrix.c (compressed_non_0_ij): new utility
48 :    
49 : bates 917 2005-09-15 Douglas Bates <bates@localhost.localdomain>
50 :    
51 :     * src/chm_common.h: header file required by all C sources that
52 :     call CHOLMOD functions. It defines a cholmod_common structure
53 :     called 'c' whose address is passed as the last argument to
54 :     (virtually) every CHOLMOD function.
55 :    
56 :     * src/Pattern.c: Simple example of the use of CHOLMOD.
57 :    
58 :     * src/init.c: initialize and finalize the cholmod_common structure.
59 :    
60 :     * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
61 :     LDL and CCOLAMD from the U. of Florida sparse matrix library.
62 :    
63 : maechler 908 2005-09-08 Martin Maechler <maechler@stat.math.ethz.ch>
64 :    
65 :     * inst/test-tools.R: new file collecting the utility functions used
66 :     in ./tests/*.R
67 :    
68 :     * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
69 :     * R/Matrix.R (cbind2): methods for NULL and missing
70 :    
71 : maechler 886 2005-08-31 Martin Maechler <maechler@stat.math.ethz.ch>
72 :    
73 :     * R/AllClass.R: new "index" class for "[" and "[<-":
74 :     First cut at "symmetricMatrix" and "triangularMatrix"
75 :     * R/gTMatrix.R (.ind.prep): new function;
76 :     Logical and character indexing now work too.
77 :     * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
78 :     * tests/indexing.R: new, including *.Rout.save
79 :     * tests/dgTMatrix.R: new
80 :    
81 : bates 876 2005-08-29 Douglas Bates <bates@wisc.edu>
82 :    
83 :     * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
84 :     indicator pos not being updated. Also enforced upper triangular
85 :     for symmetric case. Need to coerce edges component of elements of
86 :     edge list - grr! (Why don't they define their classes cleanly?)
87 :    
88 : maechler 871 2005-08-26 Martin Maechler <maechler@stat.math.ethz.ch>
89 :    
90 :     * R/Matrix.R: added first "[<-" methods; not yet functional
91 :     * R/denseMatrix.R: dito
92 :     * man/Subassign-methods.Rd: new help file for these
93 :    
94 :     2005-08-25 Martin Maechler <maechler@stat.math.ethz.ch>
95 :    
96 :     * DESCRIPTION (Version): 0.98-6
97 :    
98 :     * R/denseMatrix.R: new file for "[" fallback methods for all dense
99 :     matrices.
100 :    
101 : maechler 868 2005-08-19 Martin Maechler <maechler@stat.math.ethz.ch>
102 :    
103 :     * src/lgCMatrix.c (lcsc_to_matrix): new; need for
104 :     as( <logical>, "matrix")
105 :    
106 :     * R/pMatrix.R: coercion to "lgTMatrix"
107 :    
108 :     * R/gTMatrix.R: new virtual class to define "[" methods for.
109 :     * man/gTMatrix-class.Rd:
110 :     * General slight re-organization of where "[" methods are defined.
111 :     more to come.
112 :    
113 : maechler 871 2005-08-18 Douglas Bates <bates@wisc.edu>
114 : maechler 868
115 : maechler 871 * DESCRIPTION (Version): 0.98-5 released to CRAN
116 :    
117 :     * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
118 :     * .....
119 :    
120 : bates 863 2005-08-18 Douglas Bates <bates@localhost.localdomain>
121 :    
122 :     * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
123 :     or glmer objects.
124 :    
125 : maechler 860 2005-08-17 Martin Maechler <maechler@stat.math.ethz.ch>
126 :    
127 :     * DESCRIPTION (Version): 0.98-4 : upload to CRAN
128 :    
129 :     2005-08-16 Douglas Bates <bates@localhost.localdomain>
130 :    
131 :     * R/HBMM.R: finish re-writing R-only code.
132 :    
133 : bates 854 2005-08-15 Douglas Bates <bates@localhost.localdomain>
134 :    
135 :     * man/externalFormats.Rd: move documentation for writeHB and
136 :     writeMM here.
137 :    
138 :     * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
139 :     (suggested by Paul Roecker).
140 :    
141 :     * tests/validObj.R (assertError): Comment out test that is failing
142 :     after recent changes in r-devel.
143 :    
144 : maechler 860
145 : maechler 848 2005-08-11 Martin Maechler <maechler@stat.math.ethz.ch>
146 :    
147 :     * R/AllClass.R: intermediate virtual class "denseMatrix"
148 :     * man/denseMatrix-class.Rd
149 :     * NAMESPACE: export it, and also export
150 :     * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
151 :    
152 : bates 846 2005-08-10 Douglas Bates <bates@wisc.edu>
153 :    
154 : maechler 848 * DESCRIPTION (Version): 0.98-3 to CRAN
155 :    
156 : bates 846 * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
157 :     matrix_solve code (which was really, really wrong).
158 :    
159 : bates 835 2005-08-07 Douglas Bates <bates@wisc.edu>
160 : maechler 834
161 :     * DESCRIPTION (Version): 0.98-2
162 :    
163 :     * R/HBMM.R (readHB), (readMM): read Matrix Market formats
164 :    
165 :     * R/lmer.R (abbrvNms): new
166 :     * R/lmer.R (mcmcsamp): allow transformed parameters
167 : bates 835 * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
168 :     for the Harwell-Boeing and the MatrixMarket formats.
169 : maechler 834
170 :     2005-08-04 Martin Maechler <maechler@stat.math.ethz.ch>
171 :    
172 :     * man/dtrMatrix-class.Rd: add examples
173 : bates 835 * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
174 : maechler 834
175 :     * TODO: note the dtpMatrix (docu) bug
176 :    
177 :     * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
178 :     in order to ensure that new as.matrix() is used by old functions,
179 :     e.g., svd(), qr(), eigen(), dist(),..;
180 :     apply(), also matplot() or pairs().
181 :    
182 :    
183 :     2005-08-03 Martin Maechler <maechler@stat.math.ethz.ch>
184 :    
185 :     * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
186 :     add comments about 'control' / lmerControl() arguments
187 :    
188 : bates 835 2005-07-27 Douglas Bates <bates@wisc.edu>
189 : bates 820
190 : bates 835 * man/sleepstudy.Rd: Added the sleep data set.
191 : maechler 834 * DESCRIPTION (Version): 0.98-1 released to CRAN
192 : bates 820
193 : bates 835 2005-07-12 Douglas Bates <bates@wisc.edu>
194 : maechler 834 * man/sleepstudy.Rd: Added the sleep data set.
195 :    
196 : bates 809 * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
197 :     .Call calls that were producing spurious output.
198 :    
199 : bates 835 2005-07-05 Douglas Bates <bates@wisc.edu>
200 : bates 801
201 :     * R/lmer.R (lmer): stored updated variance component estimates in
202 :     mer object for the generalized model. (Bug reported by Renaud
203 :     Lancelot).
204 :    
205 : bates 835 2005-07-03 Douglas Bates <bates@wisc.edu>
206 : bates 794
207 :     * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
208 :     unidimensional case.
209 :    
210 : bates 835 2005-06-08 Douglas Bates <bates@wisc.edu>
211 : maechler 791
212 :     * DESCRIPTION (Version): 0.96-1
213 :    
214 :     * moved lmer-class' R and C code moved from lme4 to here
215 :    
216 : bates 835 2005-06-04 Douglas Bates <bates@wisc.edu>
217 : bates 763
218 :     * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
219 :     (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
220 :    
221 : bates 835 2005-06-02 Douglas Bates <bates@wisc.edu>
222 : bates 763
223 :     * src/Makefile.win: Forgot to update this when Makefile changed.
224 :    
225 : bates 835 2005-05-11 Douglas Bates <bates@wisc.edu>
226 : bates 726
227 :     * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
228 :     bug reported by Kurt Hornik and Michael Hahsler.
229 :    
230 : bates 835 2005-05-10 Douglas Bates <bates@wisc.edu>
231 : bates 725
232 :     * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
233 :     logical sparse matrices. These will also be used in the symbolic
234 :     analysis for lmer objects.
235 :    
236 :     * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
237 :     of b to the result. Fixes bug reported by Jean.Coursol@math.u-psud.fr
238 : maechler 791
239 : bates 835 2005-05-06 Douglas Bates <bates@wisc.edu>
240 : bates 714
241 :     * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
242 :     colMeans, colSums, rowMeans and rowSums.
243 :    
244 : bates 835 2005-04-18 Douglas Bates <bates@wisc.edu>
245 : bates 692
246 :     * src/lgCMatrix.[ch]: code for _validate method and stub for
247 :     multiplication operation.
248 :    
249 :     * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
250 :     to dgetrs.
251 :    
252 :     * src/init.c: Fix cut-and-paste error in definition of
253 :     dgeMatrix_matrix_solve
254 :    
255 :     * src/{many files}: Tighten code by using ALLOC_SLOT.
256 :    
257 : bates 835 2005-04-15 Douglas Bates <bates@wisc.edu>
258 : bates 692
259 :     * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
260 :    
261 :     * DESCRIPTION: Eliminate import of stats.
262 :    
263 : maechler 791
264 : bates 835 2005-04-06 Douglas Bates <bates@wisc.edu>
265 : bates 692
266 :     * R/AllClass.R : add logical sparse matrix classes
267 :    
268 : maechler 687 2005-04-01 Martin Maechler <maechler@stat.math.ethz.ch>
269 :    
270 :     * R/dgTMatrix.R: add "[" method for triplet matrices
271 :     * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
272 :    
273 : bates 835 2005-03-31 Douglas Bates <bates@wisc.edu>
274 : maechler 687
275 :     * DESCRIPTION (Version): release 0.95-5 to CRAN
276 :    
277 :     * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
278 :     * R/sparseMatrix.R: %*%, crossprod()
279 :     * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
280 :     * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
281 :     * src/lmer.c (lmer_fitted): fix thinko
282 :    
283 : maechler 676 2005-03-26 Martin Maechler <maechler@stat.math.ethz.ch>
284 :    
285 :     * R/AllClass.R: add two virtual sparse classes ``on top''
286 :    
287 :     2005-03-24 Martin Maechler <maechler@stat.math.ethz.ch>
288 :    
289 :     * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
290 :     correspondingly fix examples and tests/ since new()
291 :     doesn't work for virtual classes.
292 :    
293 : maechler 658 2005-03-17 Martin Maechler <maechler@stat.math.ethz.ch>
294 :    
295 :     * R/Matrix.R (as.matrix): method and one for unname()
296 :     * tests/dpoMatrix.R: tests should now be less platform dependent;
297 :     also run for R 2.1.0; using as.matrix()
298 :    
299 : bates 835 2005-03-15 Douglas Bates <bates@wisc.edu>
300 : maechler 658
301 :     * R/pMatrix.R: "pMatrix" class added
302 :     * ....
303 :    
304 : bates 835 2005-03-14 Douglas Bates <bates@wisc.edu>
305 : bates 645
306 :     * R/dtpMatrix.R: Add unpack method and an example.
307 :    
308 :     * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
309 :     of general symmetric matrices and associated S4 methods.
310 :    
311 : maechler 658 2005-03-10 Martin Maechler <maechler@stat.math.ethz.ch>
312 :     +
313 :     2005-03-05 Martin Maechler <maechler@stat.math.ethz.ch>
314 :    
315 :     * R/dgeMatrix.R (setAs): and many other files: more coercion,
316 :     crossprod() and "%*%" methods added; tests, too.
317 :     * tests/matprod.R: new, for testing these
318 :    
319 : bates 835 2005-03-03 Douglas Bates <bates@wisc.edu>
320 : bates 599
321 :     * src/lmer.c (lmer_fitted): Added.
322 :    
323 : bates 835 2005-03-02 Douglas Bates <bates@wisc.edu>
324 : bates 596
325 :     * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
326 :    
327 : bates 835 2005-02-28 Douglas Bates <bates@wisc.edu>
328 : bates 582
329 :     * src/*.c,po/,inst/po: Internationalization and localization of
330 :     the package.
331 :    
332 :     * src/ldl.[ch]: Removed these as their contents are referenced in the
333 :     R_ldl.c file.
334 :    
335 :     * src/flame.[ch]: Removed these source files.
336 : maechler 658
337 : bates 582 * src/dtrMatrix.c (make_array_triangular): Move to Mutils
338 :    
339 :     * src/LU.[ch],src/init.c: absorb in factorizations
340 :    
341 :     * src/Mutils.h: prepare for internationalization
342 :    
343 :     * src/cblas.h: move the enum definitions to Mutils.h and remove
344 :     this file
345 :    
346 : maechler 578 2005-02-26 Martin Maechler <maechler@stat.math.ethz.ch>
347 :    
348 : maechler 579 * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
349 :    
350 :     * R/dtrMatrix.R: fix t() method
351 :    
352 : maechler 578 * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
353 : maechler 658 * NAMESPACE: export them (and import generics from "methods")
354 : maechler 578 * tests/group-methods.R : and test them.
355 :    
356 :     * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
357 :     border case
358 :    
359 :     2005-02-24 Douglas Bates <bates@stat.wisc.edu>
360 :    
361 : maechler 658 * DESCRIPTION (Version): 0.95-2 released to CRAN
362 : maechler 578
363 :     * src/dgBCMatrix.c:
364 :     * src/lmer.c: many changes
365 :     * ...
366 :    
367 : maechler 512 2005-02-04 Martin Maechler <maechler@stat.math.ethz.ch>
368 :    
369 :     * R/Matrix.R: add more sophisticated show() method.
370 :    
371 : maechler 578 2005-02-02 Douglas Bates <bates@stat.wisc.edu>
372 :    
373 :     * */* : almost complete reorganization of classes.
374 :    
375 : bates 835 2005-01-26 Douglas Bates <bates@wisc.edu>
376 : bates 460
377 :     * R/AllGeneric.R: Added matrix exponential generic expm and a method
378 :     for the geMatrix class.
379 :    
380 : bates 835 2005-01-24 Douglas Bates <bates@wisc.edu>
381 : bates 460
382 :     * src/Makefile (clean): Remove *.a and *.so
383 :    
384 :     * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
385 :    
386 : bates 835 2005-01-23 Douglas Bates <bates@wisc.edu>
387 : bates 460
388 : maechler 658 * src/lmer.c (Lind): Definition of Lind was backwards. This only
389 : bates 460 had an effect in cases with more than 2 grouping factors.
390 :    
391 : bates 835 2005-01-03 Douglas Bates <bates@wisc.edu>
392 : bates 415
393 :     * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
394 :    
395 : bates 835 2004-12-23 Douglas Bates <bates@wisc.edu>
396 : bates 410
397 :     * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
398 :     and R_useDynamicSymbols (suggested by B.D.Ripley).
399 :    
400 : bates 835 2004-12-14 Douglas Bates <bates@wisc.edu>
401 : bates 392
402 :     * R/sscMatrix.R: Add determinant methods
403 :    
404 :     * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
405 :     for tripletMatrix to matrix.
406 :    
407 : bates 835 2004-12-13 Douglas Bates <bates@wisc.edu>
408 : bates 388
409 : bates 392 * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
410 :     no longer used.
411 :    
412 : bates 388 * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
413 :     with dynamic allocation of scratch arrays.
414 :    
415 :     * src/ssclme.c (ssclme_copy_ctab): Fixed bug in creation of ZtZ
416 :     for multivariate random effects with multiple grouping factors.
417 :     Fixes part but not all of #15.
418 :    
419 : bates 835 2004-12-03 Douglas Bates <bates@wisc.edu>
420 : bates 375
421 :     * src/lmeRep.c (lmeRep_factor): order of operations for multiple
422 :     scalar grouping factors corrected.
423 :    
424 : bates 835 2004-11-29 Douglas Bates <bates@wisc.edu>
425 : bates 375
426 :     * src/bCrosstab.c: remove diag_update which is no longer used
427 :    
428 : bates 835 2004-11-16 Douglas Bates <bates@wisc.edu>
429 : bates 350
430 :     * src/Metis_utils.c: Move metis.h include to C sources so that the
431 :     .h file can be included.
432 :    
433 : bates 835 2004-11-12 Douglas Bates <bates@wisc.edu>
434 : bates 342
435 : bates 350 * src/LU.c,geMatrix.c,trMatrix.c, etc.:
436 : bates 342 Complete allocation of slots in NEW_OBJECT.
437 :    
438 :     * src/Mutils.h: Moved list of symbols to an include file
439 :    
440 : bates 835 2004-11-11 Douglas Bates <bates@wisc.edu>
441 : bates 342
442 :     * src/geMutils.c (Matrix_init): remove unused function
443 :    
444 : bates 835 2004-11-10 Douglas Bates <bates@wisc.edu>
445 : bates 342
446 :     * src/cscMatrix.c (csc_to_imagemat): removed unused function
447 :    
448 : bates 835 2004-11-05 Douglas Bates <bates@wisc.edu>
449 : bates 327
450 :     * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
451 :    
452 : bates 835 2004-10-27 Douglas Bates <bates@wisc.edu>
453 : bates 303
454 :     * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
455 :    
456 : bates 835 2004-10-04 Douglas Bates <bates@wisc.edu>
457 : bates 296
458 :     * src/init.c: Created R_init_Matrix and added registration of C
459 :     routines.
460 :    
461 : bates 835 2004-10-02 Douglas Bates <bates@wisc.edu>
462 : bates 283
463 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
464 :    
465 : bates 835 2004-06-15 Douglas Bates <bates@wisc.edu>
466 : bates 229
467 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
468 :    
469 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
470 :    
471 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
472 :    
473 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
474 :    
475 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
476 :     ssclme_update_mm
477 :    
478 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
479 :    
480 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
481 :     in the order of unconstrained and constrained parameters.
482 :     (ssclme_gradient): Added the gradients (not yet correct for
483 :     multidimensional, unconstrained case).
484 :    
485 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
486 :    
487 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
488 :    
489 :     * src/Makefile.win: Remove unneeded ranlib call
490 :    
491 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
492 :    
493 :     * DESCRIPTION (Version): New release
494 :    
495 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
496 :    
497 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
498 :    
499 :     * src/triplet_to_col.c: Create triplet_to_col as a native
500 : maechler 658 function, not the version from umfpack. There were problems with
501 : bates 49 the configuration of UMFPACK for 64-bit processors and there was
502 :     only one umfpack routine being used so I moved it here.
503 :    
504 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
505 :    
506 :     * src/ssclme.c (ssclme_variances): New function.
507 :    
508 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
509 :    
510 :     * src/ssclme.c (ssclme_fitted): Added function.
511 :    
512 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
513 :    
514 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
515 :     store the dimnames in the XtX and bVar slots
516 :     (ssclme_update_mm): Change the dimensions of the bVar slot
517 :     components and the returned value from ssclme_ranef.
518 :    
519 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
520 :    
521 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
522 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
523 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
524 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
525 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
526 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
527 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
528 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
529 :     Moved the pdMat classes from the lme4 package.
530 :    
531 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
532 :    
533 :     * man/ssclme-class.Rd: Update definition and documentation of the
534 :     ssclme class to include the DIsqrt slot.
535 :    
536 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
537 :     (much faster using dsyrk, a level 3 BLAS routine).
538 :    
539 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
540 :    
541 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
542 :    
543 :     * tests/ssclme.R: Modify the test to account for the permutation
544 :     of the levels of the grouping factors.
545 :    
546 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
547 :    
548 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
549 :     directly into the ssclme class definition.
550 :    
551 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
552 :    
553 :     * DESCRIPTION (Date): New release
554 :    
555 :     * man/ssclme-class.Rd: new file.
556 :    
557 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
558 :     works and it's fast!
559 :    
560 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
561 :    
562 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
563 :    
564 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
565 :    
566 :     * DESCRIPTION (Date): New release
567 :    
568 :     * NAMESPACE: Don't export ssclme.
569 :    
570 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
571 :     school data.
572 :    
573 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
574 :    
575 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
576 :     keep track of the fixed-effects and the response. Counts also
577 :     gets an extra element, which is always one.
578 :    
579 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
580 :    
581 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
582 :    
583 :     * src/cscMatrix.c (csc_transpose): new function
584 :    
585 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
586 :     (csc_components_transpose): new function
587 :    
588 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
589 :    
590 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
591 :     triplets
592 :    
593 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
594 :    
595 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
596 :    
597 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
598 :     and all other .h files in src.
599 :    
600 :     * src/Makefile.win: This and other Makefile.win files contributed
601 :     by Brian Ripley.
602 :    
603 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
604 :    
605 :     * R/syMatrix.R: Added methods for "%*%".
606 :    
607 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
608 :     poMatrix object.
609 :    
610 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
611 :    
612 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
613 :    
614 :     2004-01-25 Douglas Bates <bates@bates2_home>
615 :    
616 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
617 :    
618 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
619 :     of nrow.
620 :    
621 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
622 :    
623 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
624 :     subdirectories.
625 :    
626 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
627 :    
628 :     * src/taucs.h: Accidently referred to global header files
629 :     instead of local files.
630 :    
631 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
632 :    
633 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
634 :     and methods and replaced all classes with S4 classes.
635 :    
636 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
637 :    
638 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
639 :    
640 :     * src/R_LapackPP.cc: Change method of calculating determinants
641 :    
642 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
643 :    
644 :     * DESCRIPTION (Version): removed empty data directory as requested
645 :     by CRAN maintainers. Changed version number and date.
646 :    
647 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
648 :    
649 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
650 :     under Windows.
651 :    
652 :     * Added configure.win and src/Makevars.win as requested by Brian
653 :     Ripley.
654 :    
655 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
656 :    
657 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
658 :     Hornik.
659 :    
660 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
661 :    
662 :     * configure.ac: Replaced configure.in with configure.ac
663 :     contributed by Kurt Hornik.
664 :    
665 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
666 :     version for R-1.5.0
667 :    
668 : maechler 512
669 : bates 10 2001-12-10 Douglas Bates <bates@stat.wisc.edu>
670 :    
671 :     * man/eigen.Rd: Removed the .Alias in the example

root@r-forge.r-project.org
ViewVC Help
Powered by ViewVC 1.0.0  
Thanks to:
Vienna University of Economics and Business Powered By FusionForge