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Annotation of /pkg/ChangeLog

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1 : bates 917 2005-09-15 Douglas Bates <bates@localhost.localdomain>
2 :    
3 :     * src/chm_common.h: header file required by all C sources that
4 :     call CHOLMOD functions. It defines a cholmod_common structure
5 :     called 'c' whose address is passed as the last argument to
6 :     (virtually) every CHOLMOD function.
7 :    
8 :     * src/Pattern.c: Simple example of the use of CHOLMOD.
9 :    
10 :     * src/init.c: initialize and finalize the cholmod_common structure.
11 :    
12 :     * src/Makefile: Added source packages CHOLMOD UMFPACK AMD COLAMD
13 :     LDL and CCOLAMD from the U. of Florida sparse matrix library.
14 :    
15 : maechler 908 2005-09-08 Martin Maechler <maechler@stat.math.ethz.ch>
16 :    
17 :     * inst/test-tools.R: new file collecting the utility functions used
18 :     in ./tests/*.R
19 :    
20 :     * R/ddenseMatrix.R (cbind2): new methods for "numeric" and "matrix"
21 :     * R/Matrix.R (cbind2): methods for NULL and missing
22 :    
23 : maechler 886 2005-08-31 Martin Maechler <maechler@stat.math.ethz.ch>
24 :    
25 :     * R/AllClass.R: new "index" class for "[" and "[<-":
26 :     First cut at "symmetricMatrix" and "triangularMatrix"
27 :     * R/gTMatrix.R (.ind.prep): new function;
28 :     Logical and character indexing now work too.
29 :     * R/Matrix.R: cheap "[<-" methods for denseMatrix now work
30 :     * tests/indexing.R: new, including *.Rout.save
31 :     * tests/dgTMatrix.R: new
32 :    
33 : bates 876 2005-08-29 Douglas Bates <bates@wisc.edu>
34 :    
35 :     * src/dgTMatrix.c (graphNEL_as_dgTMatrix): Corrected the position
36 :     indicator pos not being updated. Also enforced upper triangular
37 :     for symmetric case. Need to coerce edges component of elements of
38 :     edge list - grr! (Why don't they define their classes cleanly?)
39 :    
40 : maechler 871 2005-08-26 Martin Maechler <maechler@stat.math.ethz.ch>
41 :    
42 :     * R/Matrix.R: added first "[<-" methods; not yet functional
43 :     * R/denseMatrix.R: dito
44 :     * man/Subassign-methods.Rd: new help file for these
45 :    
46 :     2005-08-25 Martin Maechler <maechler@stat.math.ethz.ch>
47 :    
48 :     * DESCRIPTION (Version): 0.98-6
49 :    
50 :     * R/denseMatrix.R: new file for "[" fallback methods for all dense
51 :     matrices.
52 :    
53 : maechler 868 2005-08-19 Martin Maechler <maechler@stat.math.ethz.ch>
54 :    
55 :     * src/lgCMatrix.c (lcsc_to_matrix): new; need for
56 :     as( <logical>, "matrix")
57 :    
58 :     * R/pMatrix.R: coercion to "lgTMatrix"
59 :    
60 :     * R/gTMatrix.R: new virtual class to define "[" methods for.
61 :     * man/gTMatrix-class.Rd:
62 :     * General slight re-organization of where "[" methods are defined.
63 :     more to come.
64 :    
65 : maechler 871 2005-08-18 Douglas Bates <bates@wisc.edu>
66 : maechler 868
67 : maechler 871 * DESCRIPTION (Version): 0.98-5 released to CRAN
68 :    
69 :     * src/dgTMatrix.c (graphNEL_as_dgTMatrix): add first graphNEL methods
70 :     * .....
71 :    
72 : bates 863 2005-08-18 Douglas Bates <bates@localhost.localdomain>
73 :    
74 :     * R/lmer.R: Corrected naming scheme in mcmcsamp to work with lmer
75 :     or glmer objects.
76 :    
77 : maechler 860 2005-08-17 Martin Maechler <maechler@stat.math.ethz.ch>
78 :    
79 :     * DESCRIPTION (Version): 0.98-4 : upload to CRAN
80 :    
81 :     2005-08-16 Douglas Bates <bates@localhost.localdomain>
82 :    
83 :     * R/HBMM.R: finish re-writing R-only code.
84 :    
85 : bates 854 2005-08-15 Douglas Bates <bates@localhost.localdomain>
86 :    
87 :     * man/externalFormats.Rd: move documentation for writeHB and
88 :     writeMM here.
89 :    
90 :     * src/mmio.c: replace inclusion of <malloc.h> by <stdlib.h>
91 :     (suggested by Paul Roecker).
92 :    
93 :     * tests/validObj.R (assertError): Comment out test that is failing
94 :     after recent changes in r-devel.
95 :    
96 : maechler 860
97 : maechler 848 2005-08-11 Martin Maechler <maechler@stat.math.ethz.ch>
98 :    
99 :     * R/AllClass.R: intermediate virtual class "denseMatrix"
100 :     * man/denseMatrix-class.Rd
101 :     * NAMESPACE: export it, and also export
102 :     * man/unused-classes.Rd: "iMatrix", "zMatrix" and "ldenseMatrix"
103 :    
104 : bates 846 2005-08-10 Douglas Bates <bates@wisc.edu>
105 :    
106 : maechler 848 * DESCRIPTION (Version): 0.98-3 to CRAN
107 :    
108 : bates 846 * src/dtrMatrix.c (dtrMatrix_validate): fixed up validation and
109 :     matrix_solve code (which was really, really wrong).
110 :    
111 : bates 835 2005-08-07 Douglas Bates <bates@wisc.edu>
112 : maechler 834
113 :     * DESCRIPTION (Version): 0.98-2
114 :    
115 :     * R/HBMM.R (readHB), (readMM): read Matrix Market formats
116 :    
117 :     * R/lmer.R (abbrvNms): new
118 :     * R/lmer.R (mcmcsamp): allow transformed parameters
119 : bates 835 * src/HBMM.c (Matrix_writeMatrixMarket): Added read/write routines
120 :     for the Harwell-Boeing and the MatrixMarket formats.
121 : maechler 834
122 :     2005-08-04 Martin Maechler <maechler@stat.math.ethz.ch>
123 :    
124 :     * man/dtrMatrix-class.Rd: add examples
125 : bates 835 * man/dtpMatrix-class.Rd: ditto; plus note about PROBLEM
126 : maechler 834
127 :     * TODO: note the dtpMatrix (docu) bug
128 :    
129 :     * R/zzz.R (.onLoad): assignInNamespace("as.matrix", *, "base")
130 :     in order to ensure that new as.matrix() is used by old functions,
131 :     e.g., svd(), qr(), eigen(), dist(),..;
132 :     apply(), also matplot() or pairs().
133 :    
134 :    
135 :     2005-08-03 Martin Maechler <maechler@stat.math.ethz.ch>
136 :    
137 :     * R/lmer.R: add 'fixme' comments and move the linear vs glm check;
138 :     add comments about 'control' / lmerControl() arguments
139 :    
140 : bates 835 2005-07-27 Douglas Bates <bates@wisc.edu>
141 : bates 820
142 : bates 835 * man/sleepstudy.Rd: Added the sleep data set.
143 : maechler 834 * DESCRIPTION (Version): 0.98-1 released to CRAN
144 : bates 820
145 : bates 835 2005-07-12 Douglas Bates <bates@wisc.edu>
146 : maechler 834 * man/sleepstudy.Rd: Added the sleep data set.
147 :    
148 : bates 809 * R/lmer.R (glmmMCMC): Added PACKAGE = "Matrix" in a couple of
149 :     .Call calls that were producing spurious output.
150 :    
151 : bates 835 2005-07-05 Douglas Bates <bates@wisc.edu>
152 : bates 801
153 :     * R/lmer.R (lmer): stored updated variance component estimates in
154 :     mer object for the generalized model. (Bug reported by Renaud
155 :     Lancelot).
156 :    
157 : bates 835 2005-07-03 Douglas Bates <bates@wisc.edu>
158 : bates 794
159 :     * src/lmer.c (glmer_devAGQ): Added AGQ for single grouping factor,
160 :     unidimensional case.
161 :    
162 : bates 835 2005-06-08 Douglas Bates <bates@wisc.edu>
163 : maechler 791
164 :     * DESCRIPTION (Version): 0.96-1
165 :    
166 :     * moved lmer-class' R and C code moved from lme4 to here
167 :    
168 : bates 835 2005-06-04 Douglas Bates <bates@wisc.edu>
169 : bates 763
170 :     * R/dgCMatrix.R: Call to csc_matrix_mm used undefined arguments
171 :     (reported by Guissepe Ragusa <gragusa@ucsd.edu>)
172 :    
173 : bates 835 2005-06-02 Douglas Bates <bates@wisc.edu>
174 : bates 763
175 :     * src/Makefile.win: Forgot to update this when Makefile changed.
176 :    
177 : bates 835 2005-05-11 Douglas Bates <bates@wisc.edu>
178 : bates 726
179 :     * src/dgCMatrix.c (csc_transpose): Simplified function fixing a
180 :     bug reported by Kurt Hornik and Michael Hahsler.
181 :    
182 : bates 835 2005-05-10 Douglas Bates <bates@wisc.edu>
183 : bates 725
184 :     * src/lgCMatrix.c (Matrix_lgClgCmm): Implementation of methods for
185 :     logical sparse matrices. These will also be used in the symbolic
186 :     analysis for lmer objects.
187 :    
188 :     * src/dsCMatrix.c (dsCMatrix_matrix_solve): Copied the dimensions
189 :     of b to the result. Fixes bug reported by Jean.Coursol@math.u-psud.fr
190 : maechler 791
191 : bates 835 2005-05-06 Douglas Bates <bates@wisc.edu>
192 : bates 714
193 :     * src/dgeMatrix.c (dgeMatrix_colsums): Added an implementation of
194 :     colMeans, colSums, rowMeans and rowSums.
195 :    
196 : bates 835 2005-04-18 Douglas Bates <bates@wisc.edu>
197 : bates 692
198 :     * src/lgCMatrix.[ch]: code for _validate method and stub for
199 :     multiplication operation.
200 :    
201 :     * src/dgeMatrix.c (dgeMatrix_matrix_solve): Passing wrong argument
202 :     to dgetrs.
203 :    
204 :     * src/init.c: Fix cut-and-paste error in definition of
205 :     dgeMatrix_matrix_solve
206 :    
207 :     * src/{many files}: Tighten code by using ALLOC_SLOT.
208 :    
209 : bates 835 2005-04-15 Douglas Bates <bates@wisc.edu>
210 : bates 692
211 :     * R/AllClass.R: Add lgTMatrix and lgCMatrix classes
212 :    
213 :     * DESCRIPTION: Eliminate import of stats.
214 :    
215 : maechler 791
216 : bates 835 2005-04-06 Douglas Bates <bates@wisc.edu>
217 : bates 692
218 :     * R/AllClass.R : add logical sparse matrix classes
219 :    
220 : maechler 687 2005-04-01 Martin Maechler <maechler@stat.math.ethz.ch>
221 :    
222 :     * R/dgTMatrix.R: add "[" method for triplet matrices
223 :     * R/sparseMatrix.R: and other sparse ones; --> add show() for sparse
224 :    
225 : bates 835 2005-03-31 Douglas Bates <bates@wisc.edu>
226 : maechler 687
227 :     * DESCRIPTION (Version): release 0.95-5 to CRAN
228 :    
229 :     * R/dMatrix.R: add %*%, crossprod and solve "fallback" methods
230 :     * R/sparseMatrix.R: %*%, crossprod()
231 :     * R/dgeMatrix.R: more "fallback" methods for numeric/dense matrices
232 :     * man/*.Rd: move method definitions to 'Matrix' and 'dMatrix'
233 :     * src/lmer.c (lmer_fitted): fix thinko
234 :    
235 : maechler 676 2005-03-26 Martin Maechler <maechler@stat.math.ethz.ch>
236 :    
237 :     * R/AllClass.R: add two virtual sparse classes ``on top''
238 :    
239 :     2005-03-24 Martin Maechler <maechler@stat.math.ethz.ch>
240 :    
241 :     * R/AllClass.R (setClass): use "VIRTUAL" for the virtual classes;
242 :     correspondingly fix examples and tests/ since new()
243 :     doesn't work for virtual classes.
244 :    
245 : maechler 658 2005-03-17 Martin Maechler <maechler@stat.math.ethz.ch>
246 :    
247 :     * R/Matrix.R (as.matrix): method and one for unname()
248 :     * tests/dpoMatrix.R: tests should now be less platform dependent;
249 :     also run for R 2.1.0; using as.matrix()
250 :    
251 : bates 835 2005-03-15 Douglas Bates <bates@wisc.edu>
252 : maechler 658
253 :     * R/pMatrix.R: "pMatrix" class added
254 :     * ....
255 :    
256 : bates 835 2005-03-14 Douglas Bates <bates@wisc.edu>
257 : bates 645
258 :     * R/dtpMatrix.R: Add unpack method and an example.
259 :    
260 :     * src/dsyMatrix.c (dsyMatrix_trf): Add BunchKaufman factorization
261 :     of general symmetric matrices and associated S4 methods.
262 :    
263 : maechler 658 2005-03-10 Martin Maechler <maechler@stat.math.ethz.ch>
264 :     +
265 :     2005-03-05 Martin Maechler <maechler@stat.math.ethz.ch>
266 :    
267 :     * R/dgeMatrix.R (setAs): and many other files: more coercion,
268 :     crossprod() and "%*%" methods added; tests, too.
269 :     * tests/matprod.R: new, for testing these
270 :    
271 : bates 835 2005-03-03 Douglas Bates <bates@wisc.edu>
272 : bates 599
273 :     * src/lmer.c (lmer_fitted): Added.
274 :    
275 : bates 835 2005-03-02 Douglas Bates <bates@wisc.edu>
276 : bates 596
277 :     * R/dsTMatrix.R: Conversion from dsTMatrix to dsCMatrix
278 :    
279 : bates 835 2005-02-28 Douglas Bates <bates@wisc.edu>
280 : bates 582
281 :     * src/*.c,po/,inst/po: Internationalization and localization of
282 :     the package.
283 :    
284 :     * src/ldl.[ch]: Removed these as their contents are referenced in the
285 :     R_ldl.c file.
286 :    
287 :     * src/flame.[ch]: Removed these source files.
288 : maechler 658
289 : bates 582 * src/dtrMatrix.c (make_array_triangular): Move to Mutils
290 :    
291 :     * src/LU.[ch],src/init.c: absorb in factorizations
292 :    
293 :     * src/Mutils.h: prepare for internationalization
294 :    
295 :     * src/cblas.h: move the enum definitions to Mutils.h and remove
296 :     this file
297 :    
298 : maechler 578 2005-02-26 Martin Maechler <maechler@stat.math.ethz.ch>
299 :    
300 : maechler 579 * R/dgeMatrix.R: provide "dimnames" and "dimnames<-" methods
301 :    
302 :     * R/dtrMatrix.R: fix t() method
303 :    
304 : maechler 578 * R/dgeMatrix.R: define group methods "Arith", "Math", "Math2"
305 : maechler 658 * NAMESPACE: export them (and import generics from "methods")
306 : maechler 578 * tests/group-methods.R : and test them.
307 :    
308 :     * src/dtrMatrix.c (dtrMatrix_as_dgeMatrix): prevent seg.fault in
309 :     border case
310 :    
311 :     2005-02-24 Douglas Bates <bates@stat.wisc.edu>
312 :    
313 : maechler 658 * DESCRIPTION (Version): 0.95-2 released to CRAN
314 : maechler 578
315 :     * src/dgBCMatrix.c:
316 :     * src/lmer.c: many changes
317 :     * ...
318 :    
319 : maechler 512 2005-02-04 Martin Maechler <maechler@stat.math.ethz.ch>
320 :    
321 :     * R/Matrix.R: add more sophisticated show() method.
322 :    
323 : maechler 578 2005-02-02 Douglas Bates <bates@stat.wisc.edu>
324 :    
325 :     * */* : almost complete reorganization of classes.
326 :    
327 : bates 835 2005-01-26 Douglas Bates <bates@wisc.edu>
328 : bates 460
329 :     * R/AllGeneric.R: Added matrix exponential generic expm and a method
330 :     for the geMatrix class.
331 :    
332 : bates 835 2005-01-24 Douglas Bates <bates@wisc.edu>
333 : bates 460
334 :     * src/Makefile (clean): Remove *.a and *.so
335 :    
336 :     * man/cscBlocked-class.Rd: Remove reference to the lmer-class.
337 :    
338 : bates 835 2005-01-23 Douglas Bates <bates@wisc.edu>
339 : bates 460
340 : maechler 658 * src/lmer.c (Lind): Definition of Lind was backwards. This only
341 : bates 460 had an effect in cases with more than 2 grouping factors.
342 :    
343 : bates 835 2005-01-03 Douglas Bates <bates@wisc.edu>
344 : bates 415
345 :     * src/lmeRep.c (lmer_variances): change from lmeRep to lmer
346 :    
347 : bates 835 2004-12-23 Douglas Bates <bates@wisc.edu>
348 : bates 410
349 :     * src/init.c (R_init_Matrix): Reorder calls to R_registerRoutines
350 :     and R_useDynamicSymbols (suggested by B.D.Ripley).
351 :    
352 : bates 835 2004-12-14 Douglas Bates <bates@wisc.edu>
353 : bates 392
354 :     * R/sscMatrix.R: Add determinant methods
355 :    
356 :     * src/triplet.[ch],src/init.c (triplet_to_matrix): Add a coercion
357 :     for tripletMatrix to matrix.
358 :    
359 : bates 835 2004-12-13 Douglas Bates <bates@wisc.edu>
360 : bates 388
361 : bates 392 * R/AllClass.R (.onLoad): Eliminate the bbCrosstab class, which is
362 :     no longer used.
363 :    
364 : bates 388 * src/R_ldl.c: Created an R-specific version of the ldl.[ch] files
365 :     with dynamic allocation of scratch arrays.
366 :    
367 :     * src/ssclme.c (ssclme_copy_ctab): Fixed bug in creation of ZtZ
368 :     for multivariate random effects with multiple grouping factors.
369 :     Fixes part but not all of #15.
370 :    
371 : bates 835 2004-12-03 Douglas Bates <bates@wisc.edu>
372 : bates 375
373 :     * src/lmeRep.c (lmeRep_factor): order of operations for multiple
374 :     scalar grouping factors corrected.
375 :    
376 : bates 835 2004-11-29 Douglas Bates <bates@wisc.edu>
377 : bates 375
378 :     * src/bCrosstab.c: remove diag_update which is no longer used
379 :    
380 : bates 835 2004-11-16 Douglas Bates <bates@wisc.edu>
381 : bates 350
382 :     * src/Metis_utils.c: Move metis.h include to C sources so that the
383 :     .h file can be included.
384 :    
385 : bates 835 2004-11-12 Douglas Bates <bates@wisc.edu>
386 : bates 342
387 : bates 350 * src/LU.c,geMatrix.c,trMatrix.c, etc.:
388 : bates 342 Complete allocation of slots in NEW_OBJECT.
389 :    
390 :     * src/Mutils.h: Moved list of symbols to an include file
391 :    
392 : bates 835 2004-11-11 Douglas Bates <bates@wisc.edu>
393 : bates 342
394 :     * src/geMutils.c (Matrix_init): remove unused function
395 :    
396 : bates 835 2004-11-10 Douglas Bates <bates@wisc.edu>
397 : bates 342
398 :     * src/cscMatrix.c (csc_to_imagemat): removed unused function
399 :    
400 : bates 835 2004-11-05 Douglas Bates <bates@wisc.edu>
401 : bates 327
402 :     * src/Makefile.win (SOURCES_C): Keep consistent with Makefile
403 :    
404 : bates 835 2004-10-27 Douglas Bates <bates@wisc.edu>
405 : bates 303
406 :     * R/pdmatrix.R: remove PACKAGE="Matrix" in .Call calls
407 :    
408 : bates 835 2004-10-04 Douglas Bates <bates@wisc.edu>
409 : bates 296
410 :     * src/init.c: Created R_init_Matrix and added registration of C
411 :     routines.
412 :    
413 : bates 835 2004-10-02 Douglas Bates <bates@wisc.edu>
414 : bates 283
415 :     * R/tripletMatrix.R: Force a require(lattice) for the image methods.
416 :    
417 : bates 835 2004-06-15 Douglas Bates <bates@wisc.edu>
418 : bates 229
419 :     * man/trMatrix-class.Rd: Escape the % chars in .Rd files.
420 :    
421 : bates 111 2004-04-20 Douglas Bates <bates@stat.wisc.edu>
422 :    
423 :     * src/Makefile.win ($(SHLIB)): Modifications per Uwe Ligges.
424 :    
425 : bates 109 2004-04-19 Douglas Bates <bates@stat.wisc.edu>
426 :    
427 :     * src/ssclme.c (ssclme_update_mm): fix logic error in
428 :     ssclme_update_mm
429 :    
430 : bates 105 2004-04-18 Douglas Bates <bates@stat.wisc.edu>
431 :    
432 :     * src/ssclme.c (ssclme_coef, ssclme_coefGets): Create consistency
433 :     in the order of unconstrained and constrained parameters.
434 :     (ssclme_gradient): Added the gradients (not yet correct for
435 :     multidimensional, unconstrained case).
436 :    
437 : bates 78 2004-04-14 Douglas Bates <bates@stat.wisc.edu>
438 :    
439 :     * src/ssclme.c (ssclme_EMsteps): Fix logic in REML update
440 :    
441 :     * src/Makefile.win: Remove unneeded ranlib call
442 :    
443 : bates 71 2004-04-12 Douglas Bates <bates@stat.wisc.edu>
444 :    
445 :     * DESCRIPTION (Version): New release
446 :    
447 :     * src/Makefile.win: Update Makefile.win to umfpack removal.
448 :    
449 : bates 49 2004-04-05 Douglas Bates <bates@bates2_home>
450 :    
451 :     * src/triplet_to_col.c: Create triplet_to_col as a native
452 : maechler 658 function, not the version from umfpack. There were problems with
453 : bates 49 the configuration of UMFPACK for 64-bit processors and there was
454 :     only one umfpack routine being used so I moved it here.
455 :    
456 : bates 45 2004-04-04 Douglas Bates <bates@bates2_home>
457 :    
458 :     * src/ssclme.c (ssclme_variances): New function.
459 :    
460 : bates 28 2004-03-28 Douglas Bates <bates@bates2_home>
461 :    
462 :     * src/ssclme.c (ssclme_fitted): Added function.
463 :    
464 : bates 22 2004-03-27 Douglas Bates <bates@bates2_home>
465 :    
466 :     * src/ssclme.c (ssclme_transfer_dimnames): Add new function to
467 :     store the dimnames in the XtX and bVar slots
468 :     (ssclme_update_mm): Change the dimensions of the bVar slot
469 :     components and the returned value from ssclme_ranef.
470 :    
471 : bates 10 2004-03-18 Douglas Bates <bates@stat.wisc.edu>
472 :    
473 :     * R/{pdMat.R,pdIdent.R,pdLogChol.R,pdMatrixLog.R,pdNatural.R},
474 :     src/{pdMat.c,pdIdent.c,pdLogChol.c,pdNatural.c},
475 :     tests/{pdCompSymm.R,pdDiag.R,pdIdent.R,pdLogChol.R,pdNatural.R},
476 :     man/{pdMat-class.Rd,pdmatrix-class.Rd,corrmatrix-class.Rd,
477 :     pdDiag-class.Rd,pdIdent-class.Rd,pdNatural-class.Rd,
478 :     pdLogChol-class.Rd,coefGets.Rd,pdCompSymm-class.Rd,
479 :     pdfactor-class.Rd,pdFactor.Rd,pdMatrix.Rd,
480 :     pdBlocked-class.Rd},AllClass.R,AllGeneric.R:
481 :     Moved the pdMat classes from the lme4 package.
482 :    
483 :     2004-03-02 Douglas Bates <bates@stat.wisc.edu>
484 :    
485 :     * man/ssclme-class.Rd: Update definition and documentation of the
486 :     ssclme class to include the DIsqrt slot.
487 :    
488 :     * src/ssclme.c (ssclme_deviance): Modify order of computation
489 :     (much faster using dsyrk, a level 3 BLAS routine).
490 :    
491 :     * src/Makefile (SUBLIBS): Change definition (K. Hornik)
492 :    
493 :     2004-02-28 Douglas Bates <bates@stat.wisc.edu>
494 :    
495 :     * tests/ssclme.R: Modify the test to account for the permutation
496 :     of the levels of the grouping factors.
497 :    
498 :     2004-02-23 Douglas Bates <bates@stat.wisc.edu>
499 :    
500 :     * R/ssclme.R,src/ssclme.c (ssclme): Move slots of sscCrosstab slot
501 :     directly into the ssclme class definition.
502 :    
503 :     2004-02-22 Douglas Bates <bates@stat.wisc.edu>
504 :    
505 :     * DESCRIPTION (Date): New release
506 :    
507 :     * man/ssclme-class.Rd: new file.
508 :    
509 :     * src/ssclme.c (ssclme_loglik): major revisions in design. It
510 :     works and it's fast!
511 :    
512 :     2004-02-17 Douglas Bates <bates@stat.wisc.edu>
513 :    
514 :     * src/taucs/Makefile.win (lib): Change "ar" to "$(AR)" (B.Ripley)
515 :    
516 :     2004-02-16 Douglas Bates <bates@stat.wisc.edu>
517 :    
518 :     * DESCRIPTION (Date): New release
519 :    
520 :     * NAMESPACE: Don't export ssclme.
521 :    
522 :     * data/ScotsSec.rda, man/ScotsSec.Rd: Add Scottish secondary
523 :     school data.
524 :    
525 :     2004-02-11 Douglas Bates <bates@stat.wisc.edu>
526 :    
527 :     * src/sscCrosstab.c (sscCrosstab): Added a row to the incidence to
528 :     keep track of the fixed-effects and the response. Counts also
529 :     gets an extra element, which is always one.
530 :    
531 :     * src/ldl.c: Include these routines from Tim Davis' LDL package.
532 :    
533 :     2004-02-10 Douglas Bates <bates@stat.wisc.edu>
534 :    
535 :     * src/cscMatrix.c (csc_transpose): new function
536 :    
537 :     * src/Mutils.c (csc_sort_columns): perm/iperm confusion corrected
538 :     (csc_components_transpose): new function
539 :    
540 :     2004-02-06 Douglas Bates <bates@stat.wisc.edu>
541 :    
542 :     * src/triplet.c (triplet_validate): Fix Dim slot on generated
543 :     triplets
544 :    
545 :     2004-01-30 Douglas Bates <bates@stat.wisc.edu>
546 :    
547 :     * R/sscCrosstab.R (sscCrosstab): Added sscCrosstab generator function.
548 :    
549 :     * src/LU.h (MATRIX_LU_H): Add #ifndef #define ... #endif to this
550 :     and all other .h files in src.
551 :    
552 :     * src/Makefile.win: This and other Makefile.win files contributed
553 :     by Brian Ripley.
554 :    
555 :     2004-01-27 Douglas Bates <bates@stat.wisc.edu>
556 :    
557 :     * R/syMatrix.R: Added methods for "%*%".
558 :    
559 :     * R/Hilbert.R (Hilbert): Changed Hilbert function to return a
560 :     poMatrix object.
561 :    
562 :     2004-01-26 Douglas Bates <bates@stat.wisc.edu>
563 :    
564 :     * man/sscChol-class.Rd,man/mm.Rd,man/y.Rd: Added man pages.
565 :    
566 :     2004-01-25 Douglas Bates <bates@bates2_home>
567 :    
568 :     * inst/doc/Introduction.Rnw,Comparisons.Rnw: Added vignettes.
569 :    
570 :     * R/csc.R: Convert all cscMatrix classes to use Dim slot instead
571 :     of nrow.
572 :    
573 :     2003-12-31 Douglas Bates <bates@stat.wisc.edu>
574 :    
575 :     * src/taucs/taucs.h: Moved taucs.h, amd.h, and umfpack.h into
576 :     subdirectories.
577 :    
578 :     2003-12-08 Douglas Bates <bates@stat.wisc.edu>
579 :    
580 :     * src/taucs.h: Accidently referred to global header files
581 :     instead of local files.
582 :    
583 :     2003-12-04 Douglas Bates <bates@stat.wisc.edu>
584 :    
585 :     * R/AllClass.R: Lots of changes. Removed all the lapack++ code
586 :     and methods and replaced all classes with S4 classes.
587 :    
588 :     2003-04-19 Douglas Bates <bates@stat.wisc.edu>
589 :    
590 :     * R/det.R,man/det.Rd: Change name of det generic to determinant
591 :    
592 :     * src/R_LapackPP.cc: Change method of calculating determinants
593 :    
594 :     2003-02-03 Douglas Bates <bates@stat.wisc.edu>
595 :    
596 :     * DESCRIPTION (Version): removed empty data directory as requested
597 :     by CRAN maintainers. Changed version number and date.
598 :    
599 :     2002-10-23 Douglas Bates <bates@stat.wisc.edu>
600 :    
601 :     * src/laindex.h: Applied patches from Brian Ripley for compilation
602 :     under Windows.
603 :    
604 :     * Added configure.win and src/Makevars.win as requested by Brian
605 :     Ripley.
606 :    
607 :     2002-05-03 Douglas Bates <bates@stat.wisc.edu>
608 :    
609 :     * src/lamatrix.h: Removing pre-1.2.0 compatibility code per Kurt
610 :     Hornik.
611 :    
612 :     2002-04-24 Douglas Bates <bates@stat.wisc.edu>
613 :    
614 :     * configure.ac: Replaced configure.in with configure.ac
615 :     contributed by Kurt Hornik.
616 :    
617 :     * aclocal.m4 (ac_clean_files): Replaced this with Kurt Hornik's
618 :     version for R-1.5.0
619 :    
620 : maechler 512
621 : bates 10 2001-12-10 Douglas Bates <bates@stat.wisc.edu>
622 :    
623 :     * man/eigen.Rd: Removed the .Alias in the example

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